Wall clock time and date at job start Mon Mar 30 2020 08:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.50357 * 2 1 4 4 C 1.53120 * 109.50117 * 239.91922 * 2 1 3 5 5 C 1.53118 * 109.16434 * 297.71498 * 4 2 1 6 6 C 1.53041 * 109.27610 * 302.34567 * 5 4 2 7 7 N 1.46846 * 109.52118 * 59.17926 * 6 5 4 8 8 C 1.46903 * 110.99687 * 174.16045 * 7 6 5 9 9 C 1.52999 * 109.47054 * 67.50104 * 8 7 6 10 10 C 1.53002 * 109.47238 * 185.21282 * 9 8 7 11 11 C 1.50694 * 109.47410 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00148 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00320 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00441 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99736 * 359.97438 * 13 11 10 16 16 H 1.48491 * 109.46942 * 90.00649 * 15 13 11 17 17 H 1.48501 * 109.46816 * 210.00444 * 15 13 11 18 18 H 1.48498 * 109.46988 * 330.00262 * 15 13 11 19 19 C 1.46844 * 111.19785 * 298.25383 * 7 6 5 20 20 H 1.08995 * 109.46830 * 301.72967 * 19 7 6 21 21 C 1.53001 * 109.46183 * 181.76003 * 19 7 6 22 22 C 1.53007 * 109.47248 * 176.12483 * 21 19 7 23 23 C 1.52994 * 109.47160 * 185.20046 * 22 21 19 24 24 N 1.46902 * 109.47232 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47076 * 300.07690 * 1 2 3 27 27 H 1.08998 * 109.47418 * 60.08032 * 1 2 3 28 28 H 1.09003 * 109.52580 * 177.80826 * 4 2 1 29 29 H 1.09003 * 109.52157 * 57.62221 * 4 2 1 30 30 H 1.08995 * 109.50452 * 182.40564 * 5 4 2 31 31 H 1.09002 * 109.50337 * 62.28128 * 5 4 2 32 32 H 1.08998 * 109.46183 * 299.16404 * 6 5 4 33 33 H 1.09004 * 109.46002 * 179.19223 * 6 5 4 34 34 H 1.08993 * 109.47625 * 307.49968 * 8 7 6 35 35 H 1.09003 * 109.46766 * 187.49823 * 8 7 6 36 36 H 1.09001 * 109.47485 * 305.21266 * 9 8 7 37 37 H 1.09000 * 109.47446 * 65.21517 * 9 8 7 38 38 H 1.08996 * 109.47090 * 299.99917 * 10 9 8 39 39 H 1.09008 * 109.47051 * 59.99779 * 10 9 8 40 40 H 0.96999 * 119.99768 * 179.97438 * 14 13 11 41 41 H 1.09000 * 109.47350 * 296.12250 * 21 19 7 42 42 H 1.08999 * 109.47350 * 56.12924 * 21 19 7 43 43 H 1.08997 * 109.47036 * 305.20566 * 22 21 19 44 44 H 1.09004 * 109.46767 * 65.20174 * 22 21 19 45 45 H 1.08997 * 109.47571 * 300.00192 * 23 22 21 46 46 H 1.09004 * 109.47177 * 60.00379 * 23 22 21 47 47 H 1.00899 * 111.00631 * 180.02562 * 24 23 22 48 48 H 1.00904 * 111.00066 * 303.95718 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2490 5 6 1.5749 -2.1814 -1.2115 6 6 2.0846 -2.8420 0.0714 7 7 1.5675 -2.1139 1.2371 8 6 1.9223 -2.8004 2.4864 9 6 3.4364 -2.7298 2.6949 10 6 3.8208 -3.5543 3.9252 11 6 5.3120 -3.4842 4.1309 12 1 5.9244 -2.9096 3.4519 13 6 5.8947 -4.1546 5.1854 14 7 7.1961 -4.0931 5.3653 15 14 4.8355 -5.1492 6.3596 16 1 4.7192 -6.5432 5.8613 17 1 5.4613 -5.1554 7.7063 18 1 3.4842 -4.5394 6.4445 19 6 2.0410 -0.7239 1.2478 20 1 3.1308 -0.7114 1.2541 21 6 1.5160 -0.0161 2.4985 22 6 2.0873 1.4019 2.5598 23 6 1.6678 2.0645 3.8735 24 7 2.2168 3.4257 3.9326 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5150 0.8893 27 1 -0.3634 0.5126 -0.8907 28 1 3.1305 -0.6898 -1.2693 29 1 1.6442 -0.2368 -2.1399 30 1 1.9715 -2.7127 -2.0767 31 1 0.4856 -2.2157 -1.2305 32 1 3.1743 -2.8197 0.0833 33 1 1.7422 -3.8763 0.1081 34 1 1.6118 -3.8436 2.4287 35 1 1.4174 -2.3168 3.3227 36 1 3.9432 -3.1298 1.8167 37 1 3.7345 -1.6922 2.8453 38 1 3.3141 -3.1543 4.8034 39 1 3.5227 -4.5919 3.7749 40 1 7.6059 -4.5645 6.1075 41 1 0.4278 0.0320 2.4590 42 1 1.8233 -0.5702 3.3855 43 1 3.1751 1.3580 2.5061 44 1 1.7053 1.9840 1.7211 45 1 0.5801 2.1084 3.9272 46 1 2.0498 1.4824 4.7122 47 1 1.9540 3.8848 4.7918 48 1 3.2196 3.4165 3.8201 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693434837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:39:57 Heat of formation + Delta-G solvation = -30.641679 kcal Electronic energy + Delta-G solvation = -22022.127981 eV Core-core repulsion = 19110.335856 eV Total energy + Delta-G solvation = -2911.792124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.96587 -35.96377 -35.30123 -33.06953 -33.02568 -31.07789 -29.81273 -27.00357 -26.76746 -25.04164 -23.78185 -22.27949 -21.21159 -20.62305 -20.26537 -17.92373 -16.73612 -16.13955 -15.81394 -15.57331 -15.11958 -14.73559 -14.25462 -14.02878 -14.00983 -13.80364 -13.16706 -13.12648 -12.72110 -12.51221 -12.31912 -12.01369 -11.91569 -11.69094 -11.35715 -11.25027 -11.13405 -11.02481 -10.94700 -10.77069 -10.56491 -10.46844 -9.99277 -9.96021 -9.88554 -9.72943 -9.59429 -9.23025 -8.80758 -8.55035 -7.81426 -6.05634 -4.03468 3.29052 3.36415 3.40174 4.10331 4.43804 4.51872 4.78908 4.81935 4.96645 5.04905 5.13121 5.24870 5.28466 5.40761 5.48437 5.55295 5.59077 5.61379 5.69876 5.72388 5.80531 5.84504 5.87619 5.89749 5.97342 6.03015 6.04951 6.10402 6.17080 6.19426 6.26449 6.30823 6.41522 6.48192 6.51534 6.62153 6.67132 6.88848 7.01115 7.28932 7.30194 7.36644 7.43768 7.48448 7.78838 8.53350 8.99142 9.57204 11.07969 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.005478 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.324772 B = 5109.880429 C = 6392.799781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.117 4.117 5 C -0.116 4.116 6 C 0.052 3.948 7 N -0.530 5.530 8 C 0.047 3.953 9 C -0.136 4.136 10 C -0.010 4.010 11 C -0.519 4.519 12 H 0.068 0.932 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.265 1.265 19 C 0.091 3.909 20 H 0.046 0.954 21 C -0.118 4.118 22 C -0.116 4.116 23 C 0.060 3.940 24 N -0.854 5.854 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.014 0.986 39 H 0.010 0.990 40 H 0.262 0.738 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.029 0.971 47 H 0.339 0.661 48 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 9.567 -9.366 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.076 4.076 7 N -0.254 5.254 8 C -0.080 4.080 9 C -0.175 4.175 10 C -0.048 4.048 11 C -0.557 4.557 12 H 0.087 0.913 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.018 4.018 20 H 0.064 0.936 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.071 4.071 24 N -0.383 5.383 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.150 0.850 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.826 9.642 -9.943 20.289 hybrid contribution 1.195 -1.007 1.654 2.275 sum -13.631 8.635 -8.289 18.140 Atomic orbital electron populations 1.21797 0.94850 1.02603 1.00361 1.21188 0.96628 0.98473 0.93970 0.91192 1.21623 1.00368 0.95903 0.97591 1.21611 1.01524 0.95505 0.96750 1.22068 0.97889 0.97477 0.90174 1.62208 1.59116 1.01538 1.02493 1.22384 0.95901 0.98523 0.91199 1.22053 0.94508 1.00807 1.00112 1.19494 0.97338 0.94678 0.93276 1.21154 0.90859 1.31133 1.12537 0.91336 1.25047 0.94805 0.96217 0.97492 1.69923 1.09755 1.43646 1.31101 0.86770 0.81182 0.80857 0.80435 1.20300 1.21427 1.19007 1.21559 0.97345 0.88414 0.94445 0.93602 1.21723 1.01176 0.94752 0.97943 1.21568 1.00882 0.95570 0.97373 1.21815 0.99763 0.88394 0.97139 1.58777 1.17309 1.19076 1.43166 0.91257 0.92838 0.94048 0.92388 0.92242 0.92136 0.91173 0.94363 0.91086 0.91382 0.90882 0.92948 0.92703 0.96780 0.97206 0.92788 0.91031 0.91125 0.92183 0.91212 0.91292 0.95300 0.84966 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.38 37.16 0.31 -1.17 16 2 C -0.08 -0.95 2.46 -90.54 -0.22 -1.17 16 3 H 0.07 0.78 6.69 -51.93 -0.35 0.43 16 4 C -0.12 -1.29 5.51 -26.61 -0.15 -1.43 16 5 C -0.12 -1.29 5.74 -26.65 -0.15 -1.45 16 6 C 0.05 0.70 5.09 -3.83 -0.02 0.68 16 7 N -0.53 -7.44 3.98 -226.69 -0.90 -8.34 16 8 C 0.05 0.76 4.78 -3.82 -0.02 0.75 16 9 C -0.14 -2.68 4.28 -26.73 -0.11 -2.79 16 10 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 11 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 12 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 13 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.91 -28.20 13.96 55.43 0.77 -27.43 16 15 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 18 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 19 C 0.09 1.21 1.00 -67.72 -0.07 1.14 16 20 H 0.05 0.71 6.71 -51.93 -0.35 0.37 16 21 C -0.12 -1.48 3.99 -26.73 -0.11 -1.59 16 22 C -0.12 -1.35 5.07 -26.73 -0.14 -1.48 16 23 C 0.06 0.66 6.79 -3.83 -0.03 0.63 16 24 N -0.85 -8.70 9.62 -10.37 -0.10 -8.80 16 25 H 0.07 0.80 6.01 -51.93 -0.31 0.49 16 26 H 0.05 0.57 6.34 -51.93 -0.33 0.24 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.77 6.58 -51.93 -0.34 0.43 16 32 H 0.04 0.58 6.68 -51.93 -0.35 0.23 16 33 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 34 H 0.07 1.09 8.03 -51.93 -0.42 0.68 16 35 H 0.07 1.16 6.33 -51.93 -0.33 0.83 16 36 H 0.05 1.07 6.50 -51.93 -0.34 0.73 16 37 H 0.05 1.10 6.36 -51.93 -0.33 0.77 16 38 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 39 H 0.01 0.23 7.57 -51.92 -0.39 -0.16 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 41 H 0.07 0.86 6.22 -51.93 -0.32 0.54 16 42 H 0.07 1.01 5.78 -51.93 -0.30 0.71 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.80 6.82 -51.93 -0.35 0.44 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.34 2.88 9.08 -39.29 -0.36 2.53 16 48 H 0.34 3.29 8.99 -39.29 -0.35 2.94 16 LS Contribution 347.26 15.07 5.23 5.23 Total: -1.00 -30.26 347.26 -9.76 -40.02 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.86 Total: 3.77 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -1.24 Total: -21.70 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.23 Total: -44.57 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.26 -9.76 -40.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693434837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.375 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds