Wall clock time and date at job start Mon Mar 30 2020 08:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.50357 * 2 1 4 4 C 1.53120 * 109.50117 * 239.91922 * 2 1 3 5 5 C 1.53118 * 109.16434 * 297.71498 * 4 2 1 6 6 C 1.53041 * 109.27610 * 302.34567 * 5 4 2 7 7 N 1.46846 * 109.52118 * 59.17926 * 6 5 4 8 8 C 1.46903 * 110.99687 * 174.16045 * 7 6 5 9 9 C 1.52999 * 109.47054 * 67.50104 * 8 7 6 10 10 C 1.53002 * 109.47238 * 185.21282 * 9 8 7 11 11 C 1.50694 * 109.47410 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00148 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00320 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00441 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99736 * 359.97438 * 13 11 10 16 16 H 1.48491 * 109.46942 * 90.00649 * 15 13 11 17 17 H 1.48501 * 109.46816 * 210.00444 * 15 13 11 18 18 H 1.48498 * 109.46988 * 330.00262 * 15 13 11 19 19 C 1.46844 * 111.19785 * 298.25383 * 7 6 5 20 20 H 1.08995 * 109.46830 * 301.72967 * 19 7 6 21 21 C 1.53001 * 109.46183 * 181.76003 * 19 7 6 22 22 C 1.53007 * 109.47248 * 176.12483 * 21 19 7 23 23 C 1.52994 * 109.47160 * 185.20046 * 22 21 19 24 24 N 1.46902 * 109.47232 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47076 * 300.07690 * 1 2 3 27 27 H 1.08998 * 109.47418 * 60.08032 * 1 2 3 28 28 H 1.09003 * 109.52580 * 177.80826 * 4 2 1 29 29 H 1.09003 * 109.52157 * 57.62221 * 4 2 1 30 30 H 1.08995 * 109.50452 * 182.40564 * 5 4 2 31 31 H 1.09002 * 109.50337 * 62.28128 * 5 4 2 32 32 H 1.08998 * 109.46183 * 299.16404 * 6 5 4 33 33 H 1.09004 * 109.46002 * 179.19223 * 6 5 4 34 34 H 1.08993 * 109.47625 * 307.49968 * 8 7 6 35 35 H 1.09003 * 109.46766 * 187.49823 * 8 7 6 36 36 H 1.09001 * 109.47485 * 305.21266 * 9 8 7 37 37 H 1.09000 * 109.47446 * 65.21517 * 9 8 7 38 38 H 1.08996 * 109.47090 * 299.99917 * 10 9 8 39 39 H 1.09008 * 109.47051 * 59.99779 * 10 9 8 40 40 H 0.96999 * 119.99768 * 179.97438 * 14 13 11 41 41 H 1.09000 * 109.47350 * 296.12250 * 21 19 7 42 42 H 1.08999 * 109.47350 * 56.12924 * 21 19 7 43 43 H 1.08997 * 109.47036 * 305.20566 * 22 21 19 44 44 H 1.09004 * 109.46767 * 65.20174 * 22 21 19 45 45 H 1.08997 * 109.47571 * 300.00192 * 23 22 21 46 46 H 1.09004 * 109.47177 * 60.00379 * 23 22 21 47 47 H 1.00899 * 111.00631 * 180.02562 * 24 23 22 48 48 H 1.00904 * 111.00066 * 303.95718 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2490 5 6 1.5749 -2.1814 -1.2115 6 6 2.0846 -2.8420 0.0714 7 7 1.5675 -2.1139 1.2371 8 6 1.9223 -2.8004 2.4864 9 6 3.4364 -2.7298 2.6949 10 6 3.8208 -3.5543 3.9252 11 6 5.3120 -3.4842 4.1309 12 1 5.9244 -2.9096 3.4519 13 6 5.8947 -4.1546 5.1854 14 7 7.1961 -4.0931 5.3653 15 14 4.8355 -5.1492 6.3596 16 1 4.7192 -6.5432 5.8613 17 1 5.4613 -5.1554 7.7063 18 1 3.4842 -4.5394 6.4445 19 6 2.0410 -0.7239 1.2478 20 1 3.1308 -0.7114 1.2541 21 6 1.5160 -0.0161 2.4985 22 6 2.0873 1.4019 2.5598 23 6 1.6678 2.0645 3.8735 24 7 2.2168 3.4257 3.9326 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5150 0.8893 27 1 -0.3634 0.5126 -0.8907 28 1 3.1305 -0.6898 -1.2693 29 1 1.6442 -0.2368 -2.1399 30 1 1.9715 -2.7127 -2.0767 31 1 0.4856 -2.2157 -1.2305 32 1 3.1743 -2.8197 0.0833 33 1 1.7422 -3.8763 0.1081 34 1 1.6118 -3.8436 2.4287 35 1 1.4174 -2.3168 3.3227 36 1 3.9432 -3.1298 1.8167 37 1 3.7345 -1.6922 2.8453 38 1 3.3141 -3.1543 4.8034 39 1 3.5227 -4.5919 3.7749 40 1 7.6059 -4.5645 6.1075 41 1 0.4278 0.0320 2.4590 42 1 1.8233 -0.5702 3.3855 43 1 3.1751 1.3580 2.5061 44 1 1.7053 1.9840 1.7211 45 1 0.5801 2.1084 3.9272 46 1 2.0498 1.4824 4.7122 47 1 1.9540 3.8848 4.7918 48 1 3.2196 3.4165 3.8201 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693434837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:39:57 Heat of formation + Delta-G solvation = -50.566406 kcal Electronic energy + Delta-G solvation = -22022.991981 eV Core-core repulsion = 19110.335856 eV Total energy + Delta-G solvation = -2912.656125 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.05505 -36.96809 -36.63748 -34.96955 -33.99034 -32.86481 -30.79966 -28.62540 -27.74440 -26.16247 -25.16601 -23.38345 -22.68615 -21.83387 -21.52892 -19.15106 -18.78203 -17.11943 -16.97827 -16.53802 -16.31061 -16.24791 -15.69372 -15.31281 -15.15474 -14.75521 -14.72952 -14.38883 -14.31134 -13.79883 -13.45594 -13.23369 -13.17281 -12.90946 -12.72739 -12.61793 -12.33387 -12.20335 -12.02418 -11.95809 -11.83487 -11.77461 -11.63874 -11.42089 -11.37404 -11.24595 -10.94384 -10.80599 -10.76726 -9.65319 -9.08830 -8.33484 -6.38245 1.32880 1.34751 1.47190 2.32848 2.98361 3.01804 3.61248 3.83955 3.85319 3.98671 4.07469 4.17420 4.19319 4.27795 4.34537 4.39280 4.52332 4.58266 4.62395 4.63342 4.71849 4.77566 4.81806 4.86021 4.91906 4.95692 5.00625 5.03702 5.06927 5.09376 5.13949 5.17674 5.28943 5.36093 5.37237 5.41913 5.47867 5.53551 5.56813 5.62510 5.73073 6.16147 6.19258 6.27661 6.28813 6.55376 6.69384 7.26633 8.83640 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.005478 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.324772 B = 5109.880429 C = 6392.799781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.048 3.952 7 N -0.519 5.519 8 C 0.057 3.943 9 C -0.122 4.122 10 C -0.006 4.006 11 C -0.534 4.534 12 H 0.022 0.978 13 C 0.002 3.998 14 N -0.953 5.953 15 Si 0.954 3.046 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.244 1.244 19 C 0.091 3.909 20 H 0.015 0.985 21 C -0.111 4.111 22 C -0.108 4.108 23 C 0.062 3.938 24 N -0.857 5.857 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.014 0.986 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.041 0.959 38 H 0.020 0.980 39 H 0.018 0.982 40 H 0.266 0.734 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.017 0.983 47 H 0.349 0.651 48 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.006 9.569 -9.564 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.080 4.080 7 N -0.242 5.242 8 C -0.071 4.071 9 C -0.161 4.161 10 C -0.044 4.044 11 C -0.572 4.572 12 H 0.041 0.959 13 C -0.194 4.194 14 N -0.594 5.594 15 Si 0.777 3.223 16 H -0.190 1.190 17 H -0.209 1.209 18 H -0.167 1.167 19 C -0.018 4.018 20 H 0.033 0.967 21 C -0.149 4.149 22 C -0.146 4.146 23 C -0.069 4.069 24 N -0.387 5.387 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.032 0.968 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.035 0.965 47 H 0.162 0.838 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.853 9.662 -10.159 22.700 hybrid contribution 2.250 -0.944 1.650 2.946 sum -15.602 8.718 -8.510 19.795 Atomic orbital electron populations 1.21738 0.93599 1.02406 1.01227 1.21177 0.97510 0.98337 0.92913 0.90788 1.21642 0.99671 0.96016 0.98211 1.21580 1.02020 0.95417 0.95671 1.22168 0.96519 0.98158 0.91203 1.62296 1.58380 1.01748 1.01792 1.22258 0.92686 0.99415 0.92703 1.21884 0.97439 0.99074 0.97697 1.19440 0.93866 0.95853 0.95223 1.21493 0.93312 1.30502 1.11865 0.95930 1.26081 0.96220 0.97524 0.99578 1.70084 1.12029 1.45059 1.32226 0.85604 0.79874 0.79298 0.77562 1.19022 1.20875 1.16745 1.21596 0.95631 0.88398 0.96157 0.96682 1.21655 1.01792 0.94848 0.96613 1.21482 0.99742 0.95233 0.98158 1.21764 1.00288 0.88636 0.96172 1.58778 1.17518 1.18482 1.43916 0.91904 0.92688 0.92508 0.93710 0.90224 0.90868 0.90155 0.96778 0.90623 0.90680 0.90070 0.94418 0.93995 0.96128 0.96342 0.92474 0.89763 0.93066 0.93866 0.90445 0.90320 0.96476 0.83813 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.38 71.98 0.60 -1.83 16 2 C -0.08 -1.70 2.46 -10.74 -0.03 -1.73 16 3 H 0.07 1.52 6.69 -2.39 -0.02 1.51 16 4 C -0.12 -2.39 5.51 30.67 0.17 -2.22 16 5 C -0.11 -2.23 5.74 30.65 0.18 -2.05 16 6 C 0.05 1.25 5.09 86.33 0.44 1.69 16 7 N -0.52 -14.09 3.98 -871.12 -3.46 -17.55 16 8 C 0.06 1.80 4.78 86.30 0.41 2.21 16 9 C -0.12 -4.91 4.28 30.59 0.13 -4.78 16 10 C -0.01 -0.28 4.04 29.85 0.12 -0.16 16 11 C -0.53 -31.82 9.66 25.60 0.25 -31.57 16 12 H 0.02 1.49 7.99 -2.91 -0.02 1.47 16 13 C 0.00 0.15 5.47 84.65 0.46 0.61 16 14 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 15 Si 0.95 44.83 27.47 68.60 1.88 46.72 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 19 C 0.09 2.38 1.00 44.94 0.05 2.42 16 20 H 0.02 0.49 6.71 -2.39 -0.02 0.48 16 21 C -0.11 -2.71 3.99 30.60 0.12 -2.59 16 22 C -0.11 -2.46 5.07 30.59 0.16 -2.30 16 23 C 0.06 1.32 6.79 86.30 0.59 1.91 16 24 N -0.86 -16.56 9.62 -186.72 -1.80 -18.35 16 25 H 0.06 1.26 6.01 -2.39 -0.01 1.24 16 26 H 0.05 1.00 6.34 -2.39 -0.02 0.98 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.52 6.58 -2.39 -0.02 1.50 16 32 H 0.01 0.43 6.68 -2.39 -0.02 0.42 16 33 H 0.08 1.90 8.04 -2.39 -0.02 1.88 16 34 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 35 H 0.08 2.45 6.33 -2.39 -0.02 2.43 16 36 H 0.04 1.60 6.50 -2.39 -0.02 1.59 16 37 H 0.04 1.77 6.36 -2.39 -0.02 1.75 16 38 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 39 H 0.02 0.85 7.57 -2.38 -0.02 0.83 16 40 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 41 H 0.08 1.86 6.22 -2.39 -0.01 1.84 16 42 H 0.05 1.45 5.78 -2.39 -0.01 1.44 16 43 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.65 6.82 -2.39 -0.02 1.64 16 45 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.35 5.50 9.08 -89.69 -0.81 4.69 16 48 H 0.34 6.45 8.99 -89.69 -0.81 5.64 16 Total: -1.00 -66.56 347.26 -0.18 -66.74 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.74 Total: 23.64 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 3.64 Total: -40.39 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -4.96 Total: -96.70 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.72 kcal Total: -66.56 -0.18 -66.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693434837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.171 kcal (2) G-P(sol) polarization free energy of solvation -66.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds