Wall clock time and date at job start Mon Mar 30 2020 08:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.53531 * 2 1 4 4 C 1.53122 * 109.50358 * 120.09901 * 2 1 3 5 5 C 1.53116 * 109.16106 * 62.28594 * 4 2 1 6 6 C 1.53039 * 109.27819 * 57.65703 * 5 4 2 7 7 N 1.46847 * 109.52113 * 300.81998 * 6 5 4 8 8 C 1.46901 * 110.99997 * 185.84288 * 7 6 5 9 9 C 1.53001 * 109.47613 * 51.45717 * 8 7 6 10 10 C 1.52995 * 109.47386 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47153 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99554 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00078 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99524 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99694 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47554 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47063 * 119.99923 * 15 13 11 18 18 H 1.48501 * 109.47006 * 239.99652 * 15 13 11 19 19 C 1.46841 * 111.20126 * 61.74275 * 7 6 5 20 20 H 1.09005 * 109.46016 * 58.25909 * 19 7 6 21 21 C 1.52999 * 109.46635 * 178.24099 * 19 7 6 22 22 C 1.52998 * 109.47167 * 183.42610 * 21 19 7 23 23 C 1.53001 * 109.46975 * 184.16430 * 22 21 19 24 24 N 1.46900 * 109.47107 * 179.97438 * 23 22 21 25 25 H 1.09007 * 109.47327 * 180.09866 * 1 2 3 26 26 H 1.09001 * 109.47281 * 300.09661 * 1 2 3 27 27 H 1.09001 * 109.47187 * 60.09828 * 1 2 3 28 28 H 1.09000 * 109.52328 * 302.38232 * 4 2 1 29 29 H 1.09002 * 109.57352 * 182.22557 * 4 2 1 30 30 H 1.08993 * 109.50652 * 297.71505 * 5 4 2 31 31 H 1.09006 * 109.53514 * 177.61528 * 5 4 2 32 32 H 1.09005 * 109.46195 * 180.80350 * 6 5 4 33 33 H 1.09003 * 109.46501 * 60.83375 * 6 5 4 34 34 H 1.09002 * 109.47153 * 171.46322 * 8 7 6 35 35 H 1.09004 * 109.46486 * 291.45909 * 8 7 6 36 36 H 1.09003 * 109.46833 * 300.00504 * 9 8 7 37 37 H 1.08998 * 109.46898 * 59.99835 * 9 8 7 38 38 H 1.09002 * 109.46930 * 300.00329 * 10 9 8 39 39 H 1.08998 * 109.47573 * 59.99836 * 10 9 8 40 40 H 0.97009 * 119.99599 * 180.02562 * 14 13 11 41 41 H 1.08996 * 109.46981 * 303.42805 * 21 19 7 42 42 H 1.08997 * 109.46747 * 63.42928 * 21 19 7 43 43 H 1.08993 * 109.47312 * 304.17226 * 22 21 19 44 44 H 1.09008 * 109.46932 * 64.16754 * 22 21 19 45 45 H 1.08997 * 109.47075 * 300.00261 * 23 22 21 46 46 H 1.09002 * 109.46568 * 60.00890 * 23 22 21 47 47 H 1.00898 * 111.00072 * 180.02562 * 24 23 22 48 48 H 1.00900 * 111.00310 * 303.96549 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0412 -0.7238 1.2487 5 6 1.5749 -2.1818 1.2108 6 6 2.0846 -2.8420 -0.0724 7 7 1.5675 -2.1135 -1.2379 8 6 1.9222 -2.7996 -2.4874 9 6 1.5097 -4.2701 -2.3968 10 6 1.8797 -4.9848 -3.6979 11 6 1.4728 -6.4331 -3.6088 12 1 0.9982 -6.8065 -2.7134 13 6 1.7075 -7.2817 -4.6699 14 7 2.2859 -6.8270 -5.7600 15 14 1.2037 -9.0770 -4.5591 16 1 0.5778 -9.3349 -3.2375 17 1 0.2300 -9.3854 -5.6371 18 1 2.4035 -9.9383 -4.7145 19 6 2.0409 -0.7235 -1.2481 20 1 3.1308 -0.7110 -1.2542 21 6 1.5159 -0.0153 -2.4986 22 6 2.0783 1.4066 -2.5534 23 6 1.4727 2.1489 -3.7464 24 7 2.0121 3.5142 -3.7987 25 1 -0.3634 -1.0277 0.0018 26 1 -0.3634 0.5153 0.8891 27 1 -0.3633 0.5123 -0.8909 28 1 1.6441 -0.2376 2.1398 29 1 3.1304 -0.6901 1.2701 30 1 0.4857 -2.2162 1.2298 31 1 1.9710 -2.7138 2.0758 32 1 1.7423 -3.8762 -0.1094 33 1 3.1743 -2.8196 -0.0843 34 1 1.4029 -2.3273 -3.3213 35 1 2.9987 -2.7333 -2.6453 36 1 2.0291 -4.7424 -1.5628 37 1 0.4333 -4.3364 -2.2388 38 1 1.3607 -4.5126 -4.5321 39 1 2.9562 -4.9185 -3.8555 40 1 2.4506 -7.4239 -6.5067 41 1 1.8299 -0.5647 -3.3860 42 1 0.4273 0.0258 -2.4628 43 1 1.8269 1.9325 -1.6324 44 1 3.1620 1.3647 -2.6636 45 1 1.7241 1.6229 -4.6673 46 1 0.3890 2.1908 -3.6360 47 1 1.6268 4.0256 -4.5784 48 1 1.8480 4.0014 -2.9304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693456098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:40:01 Heat of formation + Delta-G solvation = -32.202170 kcal Electronic energy + Delta-G solvation = -21559.801472 eV Core-core repulsion = 18647.941679 eV Total energy + Delta-G solvation = -2911.859792 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.85078 -36.12082 -35.14453 -33.17739 -33.04559 -30.90533 -29.85710 -26.99130 -26.50875 -25.02257 -23.86634 -22.34477 -21.39054 -20.67232 -19.68400 -18.40360 -16.42488 -16.22589 -15.80720 -15.43460 -15.05992 -14.64449 -14.42690 -14.23793 -14.16804 -13.75873 -13.27869 -13.13090 -12.72374 -12.30766 -12.17729 -11.93060 -11.83610 -11.55123 -11.41970 -11.28539 -11.18863 -10.93626 -10.87035 -10.78162 -10.51222 -10.45545 -10.32858 -9.99113 -9.86177 -9.51545 -9.27930 -8.98950 -8.93639 -8.31785 -7.90941 -5.97055 -3.98883 3.32760 3.40118 3.44563 4.06078 4.40365 4.49602 4.70421 4.76098 4.92888 4.95870 5.05953 5.22088 5.32980 5.38815 5.39984 5.46913 5.53907 5.60151 5.65759 5.71259 5.75895 5.82813 5.83322 5.90892 5.97387 5.99267 6.03547 6.11192 6.18678 6.20639 6.29067 6.35590 6.41328 6.44782 6.59994 6.76905 6.85450 6.88289 7.15859 7.17241 7.51095 7.51957 7.71939 7.87231 8.03747 8.47216 9.08587 9.65001 11.14428 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.004088 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.345504 B = 6847.461761 C = 8079.104014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 H 0.068 0.932 4 C -0.116 4.116 5 C -0.118 4.118 6 C 0.050 3.950 7 N -0.530 5.530 8 C 0.055 3.945 9 C -0.109 4.109 10 C 0.022 3.978 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.093 3.907 20 H 0.034 0.966 21 C -0.119 4.119 22 C -0.116 4.116 23 C 0.060 3.940 24 N -0.854 5.854 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.026 0.974 47 H 0.340 0.660 48 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 18.403 10.982 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.078 4.078 7 N -0.255 5.255 8 C -0.072 4.072 9 C -0.147 4.147 10 C -0.016 4.016 11 C -0.555 4.555 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.016 4.016 20 H 0.052 0.948 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.071 4.071 24 N -0.383 5.383 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.044 0.956 47 H 0.152 0.848 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.687 17.989 10.744 21.021 hybrid contribution -0.245 -0.748 -0.043 0.788 sum -1.933 17.241 10.701 20.384 Atomic orbital electron populations 1.21807 0.94674 1.03025 1.00228 1.21182 0.96795 0.98174 0.94008 0.91407 1.21622 1.00086 0.96189 0.97499 1.21631 1.01836 0.95175 0.96893 1.22171 0.96793 0.98904 0.89919 1.61989 1.59721 1.00934 1.02854 1.22316 0.97907 0.96177 0.90818 1.21748 1.00543 0.91674 1.00740 1.19069 0.96564 0.94606 0.91326 1.21293 1.38904 0.94610 1.00732 0.92688 1.25027 0.95340 0.98677 0.95483 1.69981 1.43164 1.35372 1.05058 0.86556 0.78234 0.85310 0.78033 1.19743 1.21027 1.21078 1.21548 0.96356 0.89114 0.94590 0.94761 1.21728 1.01611 0.94520 0.97835 1.21598 1.01042 0.95392 0.97430 1.21826 0.96072 0.89496 0.99677 1.58726 1.66668 1.04321 1.08549 0.90889 0.94021 0.92961 0.92263 0.92616 0.90956 0.92102 0.89535 0.95508 0.90853 0.95675 0.93323 0.92645 0.96632 0.96880 0.93128 0.91222 0.90787 0.92020 0.91470 0.90910 0.95580 0.84818 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.39 37.15 0.31 -1.19 16 2 C -0.08 -0.90 2.45 -90.54 -0.22 -1.12 16 3 H 0.07 0.67 6.47 -51.93 -0.34 0.34 16 4 C -0.12 -1.23 5.51 -26.61 -0.15 -1.37 16 5 C -0.12 -1.37 5.74 -26.65 -0.15 -1.52 16 6 C 0.05 0.71 5.02 -3.83 -0.02 0.69 16 7 N -0.53 -7.91 3.89 -226.68 -0.88 -8.79 16 8 C 0.05 0.97 4.44 -3.82 -0.02 0.95 16 9 C -0.11 -2.29 4.64 -26.73 -0.12 -2.41 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 12 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 15 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 C 0.09 1.18 1.62 -67.72 -0.11 1.07 16 20 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 21 C -0.12 -1.41 4.12 -26.73 -0.11 -1.52 16 22 C -0.12 -1.18 5.30 -26.73 -0.14 -1.32 16 23 C 0.06 0.58 6.79 -3.82 -0.03 0.55 16 24 N -0.85 -7.32 9.62 -10.37 -0.10 -7.42 16 25 H 0.07 0.90 6.01 -51.92 -0.31 0.59 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.55 6.34 -51.93 -0.33 0.22 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.86 6.58 -51.93 -0.34 0.52 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.34 5.84 -51.93 -0.30 1.04 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 1.30 6.40 -51.93 -0.33 0.97 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 1.00 6.19 -51.93 -0.32 0.68 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 0.93 6.22 -51.93 -0.32 0.61 16 42 H 0.07 0.89 6.24 -51.93 -0.32 0.57 16 43 H 0.06 0.58 6.34 -51.93 -0.33 0.25 16 44 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.34 2.38 9.08 -39.29 -0.36 2.03 16 48 H 0.34 2.43 8.99 -39.29 -0.35 2.07 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -30.08 353.78 -10.24 -40.32 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -9.00 Total: 0.63 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -1.31 Total: -20.42 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -0.24 Total: -42.77 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.08 -10.24 -40.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693456098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.122 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds