Wall clock time and date at job start Mon Mar 30 2020 08:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.53531 * 2 1 4 4 C 1.53122 * 109.50358 * 120.09901 * 2 1 3 5 5 C 1.53116 * 109.16106 * 62.28594 * 4 2 1 6 6 C 1.53039 * 109.27819 * 57.65703 * 5 4 2 7 7 N 1.46847 * 109.52113 * 300.81998 * 6 5 4 8 8 C 1.46901 * 110.99997 * 185.84288 * 7 6 5 9 9 C 1.53001 * 109.47613 * 51.45717 * 8 7 6 10 10 C 1.52995 * 109.47386 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47153 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99554 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00078 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99524 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99694 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47554 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47063 * 119.99923 * 15 13 11 18 18 H 1.48501 * 109.47006 * 239.99652 * 15 13 11 19 19 C 1.46841 * 111.20126 * 61.74275 * 7 6 5 20 20 H 1.09005 * 109.46016 * 58.25909 * 19 7 6 21 21 C 1.52999 * 109.46635 * 178.24099 * 19 7 6 22 22 C 1.52998 * 109.47167 * 183.42610 * 21 19 7 23 23 C 1.53001 * 109.46975 * 184.16430 * 22 21 19 24 24 N 1.46900 * 109.47107 * 179.97438 * 23 22 21 25 25 H 1.09007 * 109.47327 * 180.09866 * 1 2 3 26 26 H 1.09001 * 109.47281 * 300.09661 * 1 2 3 27 27 H 1.09001 * 109.47187 * 60.09828 * 1 2 3 28 28 H 1.09000 * 109.52328 * 302.38232 * 4 2 1 29 29 H 1.09002 * 109.57352 * 182.22557 * 4 2 1 30 30 H 1.08993 * 109.50652 * 297.71505 * 5 4 2 31 31 H 1.09006 * 109.53514 * 177.61528 * 5 4 2 32 32 H 1.09005 * 109.46195 * 180.80350 * 6 5 4 33 33 H 1.09003 * 109.46501 * 60.83375 * 6 5 4 34 34 H 1.09002 * 109.47153 * 171.46322 * 8 7 6 35 35 H 1.09004 * 109.46486 * 291.45909 * 8 7 6 36 36 H 1.09003 * 109.46833 * 300.00504 * 9 8 7 37 37 H 1.08998 * 109.46898 * 59.99835 * 9 8 7 38 38 H 1.09002 * 109.46930 * 300.00329 * 10 9 8 39 39 H 1.08998 * 109.47573 * 59.99836 * 10 9 8 40 40 H 0.97009 * 119.99599 * 180.02562 * 14 13 11 41 41 H 1.08996 * 109.46981 * 303.42805 * 21 19 7 42 42 H 1.08997 * 109.46747 * 63.42928 * 21 19 7 43 43 H 1.08993 * 109.47312 * 304.17226 * 22 21 19 44 44 H 1.09008 * 109.46932 * 64.16754 * 22 21 19 45 45 H 1.08997 * 109.47075 * 300.00261 * 23 22 21 46 46 H 1.09002 * 109.46568 * 60.00890 * 23 22 21 47 47 H 1.00898 * 111.00072 * 180.02562 * 24 23 22 48 48 H 1.00900 * 111.00310 * 303.96549 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0412 -0.7238 1.2487 5 6 1.5749 -2.1818 1.2108 6 6 2.0846 -2.8420 -0.0724 7 7 1.5675 -2.1135 -1.2379 8 6 1.9222 -2.7996 -2.4874 9 6 1.5097 -4.2701 -2.3968 10 6 1.8797 -4.9848 -3.6979 11 6 1.4728 -6.4331 -3.6088 12 1 0.9982 -6.8065 -2.7134 13 6 1.7075 -7.2817 -4.6699 14 7 2.2859 -6.8270 -5.7600 15 14 1.2037 -9.0770 -4.5591 16 1 0.5778 -9.3349 -3.2375 17 1 0.2300 -9.3854 -5.6371 18 1 2.4035 -9.9383 -4.7145 19 6 2.0409 -0.7235 -1.2481 20 1 3.1308 -0.7110 -1.2542 21 6 1.5159 -0.0153 -2.4986 22 6 2.0783 1.4066 -2.5534 23 6 1.4727 2.1489 -3.7464 24 7 2.0121 3.5142 -3.7987 25 1 -0.3634 -1.0277 0.0018 26 1 -0.3634 0.5153 0.8891 27 1 -0.3633 0.5123 -0.8909 28 1 1.6441 -0.2376 2.1398 29 1 3.1304 -0.6901 1.2701 30 1 0.4857 -2.2162 1.2298 31 1 1.9710 -2.7138 2.0758 32 1 1.7423 -3.8762 -0.1094 33 1 3.1743 -2.8196 -0.0843 34 1 1.4029 -2.3273 -3.3213 35 1 2.9987 -2.7333 -2.6453 36 1 2.0291 -4.7424 -1.5628 37 1 0.4333 -4.3364 -2.2388 38 1 1.3607 -4.5126 -4.5321 39 1 2.9562 -4.9185 -3.8555 40 1 2.4506 -7.4239 -6.5067 41 1 1.8299 -0.5647 -3.3860 42 1 0.4273 0.0258 -2.4628 43 1 1.8269 1.9325 -1.6324 44 1 3.1620 1.3647 -2.6636 45 1 1.7241 1.6229 -4.6673 46 1 0.3890 2.1908 -3.6360 47 1 1.6268 4.0256 -4.5784 48 1 1.8480 4.0014 -2.9304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693456098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:40:00 Heat of formation + Delta-G solvation = -51.064642 kcal Electronic energy + Delta-G solvation = -21560.619410 eV Core-core repulsion = 18647.941679 eV Total energy + Delta-G solvation = -2912.677731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92608 -37.09205 -36.51842 -34.99416 -34.01677 -32.68111 -30.79360 -28.52493 -27.66441 -26.12293 -25.29587 -23.71590 -22.55776 -21.64340 -21.32701 -19.39954 -18.50689 -17.10612 -16.98025 -16.46610 -16.36657 -16.19614 -15.66226 -15.55856 -15.10926 -14.79305 -14.52066 -14.36965 -14.02734 -13.74248 -13.58729 -13.16572 -13.06252 -12.93079 -12.74020 -12.63496 -12.41091 -12.26186 -12.21530 -12.10414 -11.79028 -11.73755 -11.47057 -11.38843 -11.25354 -11.12580 -10.88936 -10.75303 -10.55889 -9.61554 -9.16764 -8.21029 -6.32210 1.39117 1.39431 1.53137 2.40119 2.92662 3.12067 3.59361 3.79941 3.85284 3.97203 4.09820 4.15074 4.25098 4.26823 4.32793 4.43365 4.51508 4.58056 4.59388 4.66603 4.71217 4.77104 4.79399 4.89799 4.93092 4.98402 4.99948 5.06144 5.10096 5.13868 5.17654 5.23907 5.28118 5.35080 5.37227 5.43485 5.50938 5.51963 5.71889 5.73206 5.84275 6.15713 6.22852 6.27293 6.33231 6.61153 6.84651 7.37108 8.91206 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.004088 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.345504 B = 6847.461761 C = 8079.104014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 H 0.085 0.915 4 C -0.114 4.114 5 C -0.112 4.112 6 C 0.046 3.954 7 N -0.529 5.529 8 C 0.068 3.932 9 C -0.092 4.092 10 C 0.027 3.973 11 C -0.541 4.541 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.278 1.278 19 C 0.091 3.909 20 H 0.023 0.977 21 C -0.114 4.114 22 C -0.106 4.106 23 C 0.062 3.938 24 N -0.860 5.860 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.020 0.980 34 H 0.070 0.930 35 H 0.013 0.987 36 H 0.051 0.949 37 H 0.053 0.947 38 H -0.009 1.009 39 H -0.013 1.013 40 H 0.264 0.736 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.033 0.967 47 H 0.349 0.651 48 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.738 19.178 12.776 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 H 0.104 0.896 4 C -0.152 4.152 5 C -0.149 4.149 6 C -0.082 4.082 7 N -0.253 5.253 8 C -0.060 4.060 9 C -0.130 4.130 10 C -0.011 4.011 11 C -0.579 4.579 12 H 0.077 0.923 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.017 4.017 20 H 0.041 0.959 21 C -0.152 4.152 22 C -0.144 4.144 23 C -0.069 4.069 24 N -0.391 5.391 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.009 0.991 39 H 0.005 0.995 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.051 0.949 47 H 0.162 0.838 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.485 18.786 12.555 22.732 hybrid contribution 0.027 -0.957 -0.624 1.142 sum -2.458 17.830 11.931 21.594 Atomic orbital electron populations 1.21760 0.94304 1.02091 1.01181 1.21191 0.96982 0.98717 0.92802 0.89640 1.21631 1.00177 0.95265 0.98122 1.21597 1.01741 0.96048 0.95544 1.22224 0.96420 0.98434 0.91073 1.62001 1.59747 1.01943 1.01631 1.22026 0.96973 0.94413 0.92574 1.21487 1.00248 0.93383 0.97862 1.18961 0.94452 0.94536 0.93143 1.21706 1.39219 0.95886 1.01124 0.92285 1.25999 0.95075 1.03881 0.94937 1.70112 1.44062 1.37351 1.05897 0.85382 0.78092 0.78916 0.78569 1.18567 1.20237 1.20326 1.21663 0.95806 0.87885 0.96356 0.95854 1.21664 1.01618 0.95393 0.96518 1.21486 1.00138 0.94301 0.98477 1.21732 0.96460 0.89990 0.98698 1.58683 1.66829 1.04014 1.09587 0.92737 0.92239 0.92864 0.90132 0.92618 0.91013 0.90699 0.91191 0.96209 0.91139 0.96854 0.93008 0.92846 0.99053 0.99486 0.92773 0.93405 0.90676 0.90424 0.92609 0.92342 0.94851 0.83795 0.83941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.39 71.98 0.60 -1.97 16 2 C -0.08 -1.51 2.45 -10.74 -0.03 -1.53 16 3 H 0.09 1.40 6.47 -2.39 -0.02 1.38 16 4 C -0.11 -2.10 5.51 30.67 0.17 -1.93 16 5 C -0.11 -2.40 5.74 30.65 0.18 -2.22 16 6 C 0.05 1.31 5.02 86.33 0.43 1.74 16 7 N -0.53 -15.79 3.89 -871.08 -3.39 -19.17 16 8 C 0.07 2.49 4.44 86.30 0.38 2.87 16 9 C -0.09 -3.98 4.64 30.59 0.14 -3.84 16 10 C 0.03 1.46 4.97 29.85 0.15 1.61 16 11 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 14 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 15 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 C 0.09 2.26 1.62 44.94 0.07 2.33 16 20 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 21 C -0.11 -2.67 4.12 30.59 0.13 -2.54 16 22 C -0.11 -2.02 5.30 30.59 0.16 -1.86 16 23 C 0.06 1.13 6.79 86.30 0.59 1.72 16 24 N -0.86 -13.46 9.62 -186.72 -1.80 -15.26 16 25 H 0.05 1.25 6.01 -2.38 -0.01 1.23 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.99 6.34 -2.39 -0.02 0.98 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.57 6.58 -2.39 -0.02 1.56 16 31 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.07 2.19 5.84 -2.38 -0.01 2.17 16 33 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 2.62 6.40 -2.39 -0.02 2.60 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 2.19 6.19 -2.39 -0.01 2.18 16 37 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16 40 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 41 H 0.05 1.32 6.22 -2.39 -0.01 1.31 16 42 H 0.07 1.75 6.24 -2.39 -0.01 1.74 16 43 H 0.08 1.25 6.34 -2.39 -0.02 1.23 16 44 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.35 4.40 9.08 -89.70 -0.81 3.59 16 48 H 0.35 4.26 8.99 -89.69 -0.81 3.46 16 Total: -1.00 -65.29 353.78 0.10 -65.18 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -0.70 Total: 16.65 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 3.67 Total: -36.77 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -4.90 Total: -92.20 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.29 0.10 -65.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693456098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.120 kcal (2) G-P(sol) polarization free energy of solvation -65.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds