Wall clock time and date at job start Mon Mar 30 2020 07:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47434 * 2 1 4 4 N 1.46898 * 109.47603 * 183.08560 * 3 2 1 5 5 C 1.46900 * 110.99710 * 282.45416 * 4 3 2 6 6 C 1.53005 * 109.47455 * 88.77979 * 5 4 3 7 7 H 1.09002 * 109.46098 * 298.15420 * 6 5 4 8 8 C 1.53029 * 109.45514 * 178.17715 * 6 5 4 9 9 C 1.53119 * 109.27760 * 180.81165 * 8 6 5 10 10 C 1.53118 * 109.16252 * 57.65366 * 9 8 6 11 11 C 1.53039 * 109.27801 * 302.34689 * 10 9 8 12 12 N 1.46843 * 109.52052 * 59.17781 * 11 10 9 13 13 C 1.46897 * 111.00162 * 158.50104 * 4 3 2 14 14 H 1.09001 * 109.46997 * 173.08891 * 13 4 3 15 15 C 1.52993 * 109.47280 * 53.08439 * 13 4 3 16 16 C 1.52998 * 109.46871 * 293.08000 * 13 4 3 17 17 C 1.50692 * 109.47625 * 295.57710 * 16 13 4 18 18 H 1.08005 * 119.99667 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00305 * 179.97438 * 17 16 13 20 20 N 1.31510 * 119.99826 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99668 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47119 * 89.99896 * 21 19 17 23 23 H 1.48503 * 109.46893 * 209.99524 * 21 19 17 24 24 H 1.48497 * 109.47029 * 329.99255 * 21 19 17 25 25 H 1.08993 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46954 * 300.00020 * 1 2 3 27 27 H 1.09001 * 109.47046 * 59.99925 * 1 2 3 28 28 H 1.08994 * 109.47234 * 239.99646 * 2 1 3 29 29 H 1.09003 * 109.46759 * 119.99617 * 2 1 3 30 30 H 1.09008 * 109.47128 * 63.08110 * 3 2 1 31 31 H 1.09004 * 109.46898 * 303.08529 * 3 2 1 32 32 H 1.09001 * 109.47595 * 328.77948 * 5 4 3 33 33 H 1.09004 * 109.47373 * 208.77919 * 5 4 3 34 34 H 1.08997 * 109.50663 * 300.75111 * 8 6 5 35 35 H 1.09000 * 109.50228 * 60.87196 * 8 6 5 36 36 H 1.09006 * 109.52387 * 177.56571 * 9 8 6 37 37 H 1.09004 * 109.51983 * 297.74526 * 9 8 6 38 38 H 1.08999 * 109.50079 * 62.28548 * 10 9 8 39 39 H 1.08998 * 109.50484 * 182.40842 * 10 9 8 40 40 H 1.08999 * 109.46197 * 299.16674 * 11 10 9 41 41 H 1.09000 * 109.46045 * 179.19217 * 11 10 9 42 42 H 1.00903 * 110.99685 * 174.15904 * 12 11 10 43 43 H 1.09001 * 109.47474 * 300.00160 * 15 13 4 44 44 H 1.09005 * 109.47404 * 59.99963 * 15 13 4 45 45 H 1.09005 * 109.47054 * 180.02562 * 15 13 4 46 46 H 1.09005 * 109.46768 * 55.58257 * 16 13 4 47 47 H 1.09007 * 109.47083 * 175.57459 * 16 13 4 48 48 H 0.97003 * 119.99847 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5072 1.4432 -0.0745 5 6 4.1007 1.1237 1.2307 6 6 4.2623 -0.3923 1.3602 7 1 3.2826 -0.8675 1.3111 8 6 4.9223 -0.7218 2.7010 9 6 5.1005 -2.2381 2.8176 10 6 5.9389 -2.7379 1.6378 11 6 5.2494 -2.3499 0.3278 12 7 5.1030 -0.8902 0.2639 13 6 4.0080 2.7282 -0.5802 14 1 5.0956 2.7472 -0.5102 15 6 3.4231 3.8682 0.2558 16 6 3.5881 2.8998 -2.0414 17 6 4.2519 1.8404 -2.8827 18 1 4.9075 1.1167 -2.4212 19 6 4.0216 1.7942 -4.2414 20 7 4.6014 0.8700 -4.9755 21 14 2.8871 3.0455 -5.0393 22 1 3.6766 4.2292 -5.4644 23 1 2.2327 2.4353 -6.2245 24 1 1.8501 3.4666 -4.0633 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7226 1.9401 0.9164 31 1 1.6323 1.9720 -0.8611 32 1 3.4498 1.4888 2.0251 33 1 5.0770 1.6014 1.3126 34 1 5.8963 -0.2357 2.7564 35 1 4.2905 -0.3660 3.5148 36 1 5.6095 -2.4743 3.7521 37 1 4.1239 -2.7219 2.8014 38 1 6.9288 -2.2834 1.6765 39 1 6.0333 -3.8224 1.6919 40 1 4.2650 -2.8158 0.2836 41 1 5.8510 -2.6917 -0.5144 42 1 4.7375 -0.6022 -0.6315 43 1 2.3355 3.8492 0.1858 44 1 3.7223 3.7459 1.2969 45 1 3.7944 4.8217 -0.1197 46 1 2.5054 2.8023 -2.1221 47 1 3.8913 3.8860 -2.3932 48 1 4.4390 0.8373 -5.9313 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834930.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:46 Heat of formation + Delta-G solvation = -13.106161 kcal Electronic energy + Delta-G solvation = -22600.510957 eV Core-core repulsion = 19689.479230 eV Total energy + Delta-G solvation = -2911.031727 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.10193 -37.40084 -33.75755 -32.63912 -31.94040 -31.40960 -29.65698 -27.74291 -26.21067 -24.62616 -23.11336 -22.53774 -21.15569 -20.72045 -19.40693 -18.61305 -16.54004 -16.03715 -15.62624 -15.14253 -14.63338 -14.16538 -14.10851 -13.79244 -13.50029 -13.16059 -12.95904 -12.73452 -12.57298 -12.45839 -12.24974 -12.04925 -11.86575 -11.72489 -11.47497 -11.23369 -11.11894 -10.74579 -10.68535 -10.61772 -10.53942 -10.28731 -10.12408 -9.94754 -9.93168 -9.56747 -9.45111 -8.95285 -8.39114 -7.81012 -7.49415 -5.87860 -3.81047 3.36619 3.44765 3.46725 4.41442 4.56533 4.65040 5.04448 5.07486 5.16759 5.27678 5.39129 5.45477 5.47104 5.58474 5.65549 5.70829 5.73783 5.74947 5.80099 5.82652 5.86050 5.90393 5.99343 6.05607 6.08801 6.12472 6.13246 6.17285 6.21451 6.30653 6.33172 6.41160 6.44557 6.52398 6.57280 6.71594 6.77300 6.83202 7.16509 7.38440 7.62570 7.85492 7.90362 8.01129 8.14822 8.76279 9.26652 9.75814 11.25846 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.006260 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.115058 B = 4471.547941 C = 4928.659346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.058 3.942 4 N -0.508 5.508 5 C 0.061 3.939 6 C 0.090 3.910 7 H 0.044 0.956 8 C -0.114 4.114 9 C -0.117 4.117 10 C -0.116 4.116 11 C 0.059 3.941 12 N -0.677 5.677 13 C 0.098 3.902 14 H 0.077 0.923 15 C -0.185 4.185 16 C -0.008 4.008 17 C -0.486 4.486 18 H 0.083 0.917 19 C 0.062 3.938 20 N -0.907 5.907 21 Si 0.870 3.130 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.270 1.270 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.022 0.978 31 H 0.078 0.922 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.021 0.979 41 H 0.070 0.930 42 H 0.371 0.629 43 H 0.050 0.950 44 H 0.042 0.958 45 H 0.054 0.946 46 H 0.016 0.984 47 H 0.011 0.989 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.378 -2.953 15.134 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.070 4.070 4 N -0.231 5.231 5 C -0.068 4.068 6 C -0.021 4.021 7 H 0.061 0.939 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.154 4.154 11 C -0.071 4.071 12 N -0.314 5.314 13 C -0.010 4.010 14 H 0.095 0.905 15 C -0.244 4.244 16 C -0.045 4.045 17 C -0.524 4.524 18 H 0.101 0.899 19 C -0.137 4.137 20 N -0.547 5.547 21 Si 0.698 3.302 22 H -0.207 1.207 23 H -0.218 1.218 24 H -0.195 1.195 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.089 0.911 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.034 0.966 47 H 0.030 0.970 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.638 -3.242 14.915 15.490 hybrid contribution -1.776 1.001 -0.322 2.064 sum -4.414 -2.241 14.593 15.410 Atomic orbital electron populations 1.21735 0.96627 1.01022 1.01305 1.21761 0.94442 0.97608 1.02532 1.22191 0.88586 0.96321 0.99883 1.61838 1.05273 1.32409 1.23541 1.22224 0.99254 0.95096 0.90248 1.21661 0.94412 0.94889 0.91112 0.93854 1.21624 1.01216 0.95774 0.96607 1.21530 0.99728 0.96187 0.98049 1.21588 0.99745 0.99461 0.94642 1.21836 0.98276 0.89512 0.97453 1.60210 1.53910 1.09309 1.07932 1.21734 0.98907 0.84572 0.95747 0.90481 1.22593 1.01254 1.00866 0.99694 1.19712 0.96657 0.96978 0.91160 1.21054 1.27027 1.13092 0.91231 0.89945 1.24991 0.95831 0.95389 0.97506 1.69908 1.44549 1.34377 1.05915 0.86954 0.81953 0.82218 0.79068 1.20703 1.21772 1.19479 0.93171 0.93515 0.92720 0.90822 0.92145 0.96031 0.90326 0.95039 0.91117 0.91430 0.92541 0.92513 0.92736 0.91394 0.92456 0.96123 0.91110 0.80533 0.93094 0.93932 0.92682 0.96598 0.97043 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.13 -1.92 5.55 -26.73 -0.15 -2.06 16 3 C 0.06 0.96 3.51 -3.83 -0.01 0.94 16 4 N -0.51 -8.95 3.14 -226.65 -0.71 -9.66 16 5 C 0.06 0.92 3.88 -3.82 -0.01 0.91 16 6 C 0.09 1.31 2.41 -67.72 -0.16 1.14 16 7 H 0.04 0.65 4.79 -51.93 -0.25 0.41 16 8 C -0.11 -1.41 5.37 -26.65 -0.14 -1.56 16 9 C -0.12 -1.34 6.00 -26.61 -0.16 -1.50 16 10 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 11 C 0.06 0.86 6.55 -3.84 -0.03 0.84 16 12 N -0.68 -11.23 6.50 -106.76 -0.69 -11.92 16 13 C 0.10 1.88 2.17 -67.72 -0.15 1.73 16 14 H 0.08 1.55 7.76 -51.93 -0.40 1.15 16 15 C -0.18 -2.95 8.57 37.15 0.32 -2.63 16 16 C -0.01 -0.18 3.46 -27.89 -0.10 -0.27 16 17 C -0.49 -13.29 9.38 -34.44 -0.32 -13.62 16 18 H 0.08 2.45 7.99 -52.48 -0.42 2.03 16 19 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 20 N -0.91 -27.80 13.96 55.43 0.77 -27.03 16 21 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 0.87 5.08 -51.93 -0.26 0.61 16 30 H 0.02 0.33 7.01 -51.92 -0.36 -0.04 16 31 H 0.08 1.46 5.76 -51.93 -0.30 1.16 16 32 H 0.03 0.45 7.45 -51.93 -0.39 0.06 16 33 H 0.07 1.13 7.51 -51.93 -0.39 0.74 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.37 7.29 8.01 -39.29 -0.31 6.98 16 43 H 0.05 0.80 6.74 -51.93 -0.35 0.45 16 44 H 0.04 0.61 7.55 -51.93 -0.39 0.22 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.02 0.37 5.20 -51.93 -0.27 0.10 16 47 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 352.73 15.07 5.32 5.32 Total: -1.00 -28.44 352.73 -9.95 -38.40 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -9.16 Total: 5.38 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -0.81 Total: -17.57 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.63 Total: -48.61 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.44 -9.95 -38.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834930.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.290 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds