Wall clock time and date at job start Mon Mar 30 2020 07:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47434 * 2 1 4 4 N 1.46898 * 109.47603 * 183.08560 * 3 2 1 5 5 C 1.46900 * 110.99710 * 282.45416 * 4 3 2 6 6 C 1.53005 * 109.47455 * 88.77979 * 5 4 3 7 7 H 1.09002 * 109.46098 * 298.15420 * 6 5 4 8 8 C 1.53029 * 109.45514 * 178.17715 * 6 5 4 9 9 C 1.53119 * 109.27760 * 180.81165 * 8 6 5 10 10 C 1.53118 * 109.16252 * 57.65366 * 9 8 6 11 11 C 1.53039 * 109.27801 * 302.34689 * 10 9 8 12 12 N 1.46843 * 109.52052 * 59.17781 * 11 10 9 13 13 C 1.46897 * 111.00162 * 158.50104 * 4 3 2 14 14 H 1.09001 * 109.46997 * 173.08891 * 13 4 3 15 15 C 1.52993 * 109.47280 * 53.08439 * 13 4 3 16 16 C 1.52998 * 109.46871 * 293.08000 * 13 4 3 17 17 C 1.50692 * 109.47625 * 295.57710 * 16 13 4 18 18 H 1.08005 * 119.99667 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00305 * 179.97438 * 17 16 13 20 20 N 1.31510 * 119.99826 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99668 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47119 * 89.99896 * 21 19 17 23 23 H 1.48503 * 109.46893 * 209.99524 * 21 19 17 24 24 H 1.48497 * 109.47029 * 329.99255 * 21 19 17 25 25 H 1.08993 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46954 * 300.00020 * 1 2 3 27 27 H 1.09001 * 109.47046 * 59.99925 * 1 2 3 28 28 H 1.08994 * 109.47234 * 239.99646 * 2 1 3 29 29 H 1.09003 * 109.46759 * 119.99617 * 2 1 3 30 30 H 1.09008 * 109.47128 * 63.08110 * 3 2 1 31 31 H 1.09004 * 109.46898 * 303.08529 * 3 2 1 32 32 H 1.09001 * 109.47595 * 328.77948 * 5 4 3 33 33 H 1.09004 * 109.47373 * 208.77919 * 5 4 3 34 34 H 1.08997 * 109.50663 * 300.75111 * 8 6 5 35 35 H 1.09000 * 109.50228 * 60.87196 * 8 6 5 36 36 H 1.09006 * 109.52387 * 177.56571 * 9 8 6 37 37 H 1.09004 * 109.51983 * 297.74526 * 9 8 6 38 38 H 1.08999 * 109.50079 * 62.28548 * 10 9 8 39 39 H 1.08998 * 109.50484 * 182.40842 * 10 9 8 40 40 H 1.08999 * 109.46197 * 299.16674 * 11 10 9 41 41 H 1.09000 * 109.46045 * 179.19217 * 11 10 9 42 42 H 1.00903 * 110.99685 * 174.15904 * 12 11 10 43 43 H 1.09001 * 109.47474 * 300.00160 * 15 13 4 44 44 H 1.09005 * 109.47404 * 59.99963 * 15 13 4 45 45 H 1.09005 * 109.47054 * 180.02562 * 15 13 4 46 46 H 1.09005 * 109.46768 * 55.58257 * 16 13 4 47 47 H 1.09007 * 109.47083 * 175.57459 * 16 13 4 48 48 H 0.97003 * 119.99847 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5072 1.4432 -0.0745 5 6 4.1007 1.1237 1.2307 6 6 4.2623 -0.3923 1.3602 7 1 3.2826 -0.8675 1.3111 8 6 4.9223 -0.7218 2.7010 9 6 5.1005 -2.2381 2.8176 10 6 5.9389 -2.7379 1.6378 11 6 5.2494 -2.3499 0.3278 12 7 5.1030 -0.8902 0.2639 13 6 4.0080 2.7282 -0.5802 14 1 5.0956 2.7472 -0.5102 15 6 3.4231 3.8682 0.2558 16 6 3.5881 2.8998 -2.0414 17 6 4.2519 1.8404 -2.8827 18 1 4.9075 1.1167 -2.4212 19 6 4.0216 1.7942 -4.2414 20 7 4.6014 0.8700 -4.9755 21 14 2.8871 3.0455 -5.0393 22 1 3.6766 4.2292 -5.4644 23 1 2.2327 2.4353 -6.2245 24 1 1.8501 3.4666 -4.0633 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7226 1.9401 0.9164 31 1 1.6323 1.9720 -0.8611 32 1 3.4498 1.4888 2.0251 33 1 5.0770 1.6014 1.3126 34 1 5.8963 -0.2357 2.7564 35 1 4.2905 -0.3660 3.5148 36 1 5.6095 -2.4743 3.7521 37 1 4.1239 -2.7219 2.8014 38 1 6.9288 -2.2834 1.6765 39 1 6.0333 -3.8224 1.6919 40 1 4.2650 -2.8158 0.2836 41 1 5.8510 -2.6917 -0.5144 42 1 4.7375 -0.6022 -0.6315 43 1 2.3355 3.8492 0.1858 44 1 3.7223 3.7459 1.2969 45 1 3.7944 4.8217 -0.1197 46 1 2.5054 2.8023 -2.1221 47 1 3.8913 3.8860 -2.3932 48 1 4.4390 0.8373 -5.9313 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834930.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:45 Heat of formation + Delta-G solvation = -30.492262 kcal Electronic energy + Delta-G solvation = -22601.264875 eV Core-core repulsion = 19689.479230 eV Total energy + Delta-G solvation = -2911.785645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.37075 -38.66456 -35.33060 -34.28324 -33.37673 -32.57785 -31.10992 -29.41265 -27.41365 -25.91332 -24.54916 -24.00024 -22.42218 -22.02612 -20.58475 -20.02486 -18.70379 -17.24682 -16.94769 -16.47360 -16.31091 -15.69679 -15.17676 -15.11194 -14.77866 -14.59261 -14.30762 -13.99611 -13.90145 -13.81502 -13.67270 -13.55873 -13.25911 -12.98020 -12.87586 -12.58112 -12.42341 -12.27343 -12.21769 -11.83823 -11.71472 -11.61182 -11.50162 -11.33445 -11.23920 -11.19808 -11.13513 -10.78732 -10.61168 -9.09399 -8.80942 -8.11331 -6.08159 1.37227 1.38883 1.48720 2.44915 3.07645 3.27146 3.44847 3.96673 4.02512 4.09222 4.12127 4.19453 4.24716 4.38304 4.39789 4.48052 4.55452 4.59344 4.61300 4.63701 4.69960 4.74812 4.83021 4.88251 4.92732 4.96539 5.02997 5.05765 5.11381 5.15579 5.16977 5.20974 5.22691 5.25793 5.32245 5.37751 5.42351 5.48969 5.60040 5.64083 5.81163 6.39850 6.45331 6.56315 6.62795 6.69225 7.01819 7.51623 9.05512 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.006260 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.115058 B = 4471.547941 C = 4928.659346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C 0.062 3.938 4 N -0.529 5.529 5 C 0.066 3.934 6 C 0.091 3.909 7 H 0.042 0.958 8 C -0.110 4.110 9 C -0.114 4.114 10 C -0.111 4.111 11 C 0.056 3.944 12 N -0.692 5.692 13 C 0.103 3.897 14 H 0.058 0.942 15 C -0.174 4.174 16 C -0.005 4.005 17 C -0.477 4.477 18 H 0.044 0.956 19 C 0.000 4.000 20 N -0.956 5.956 21 Si 0.935 3.065 22 H -0.273 1.273 23 H -0.293 1.293 24 H -0.252 1.252 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.019 0.981 41 H 0.057 0.943 42 H 0.348 0.652 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.017 0.983 47 H 0.013 0.987 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 -2.043 17.697 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.066 4.066 4 N -0.252 5.252 5 C -0.062 4.062 6 C -0.019 4.019 7 H 0.059 0.941 8 C -0.148 4.148 9 C -0.152 4.152 10 C -0.149 4.149 11 C -0.074 4.074 12 N -0.325 5.325 13 C -0.005 4.005 14 H 0.076 0.924 15 C -0.232 4.232 16 C -0.042 4.042 17 C -0.516 4.516 18 H 0.062 0.938 19 C -0.195 4.195 20 N -0.599 5.599 21 Si 0.761 3.239 22 H -0.199 1.199 23 H -0.220 1.220 24 H -0.175 1.175 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.168 0.832 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.032 0.968 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.176 -2.325 17.523 18.163 hybrid contribution -1.226 0.643 -1.099 1.767 sum -5.402 -1.683 16.424 17.372 Atomic orbital electron populations 1.21699 0.94672 1.01980 1.01838 1.21678 0.96075 0.96616 1.01292 1.22166 0.87727 0.96886 0.99818 1.61742 1.06185 1.31867 1.25374 1.22214 0.98932 0.95530 0.89514 1.21739 0.94279 0.94329 0.91587 0.94066 1.21611 1.00981 0.96634 0.95569 1.21530 0.99987 0.95294 0.98346 1.21559 0.99151 1.00619 0.93577 1.21908 0.98280 0.88486 0.98681 1.60276 1.54389 1.10540 1.07305 1.21489 0.98042 0.86904 0.94105 0.92362 1.22442 1.01328 0.99383 1.00096 1.19654 0.96084 0.95202 0.93260 1.21279 1.25773 1.12910 0.91630 0.93754 1.25836 0.97775 0.97530 0.98366 1.70078 1.46873 1.36834 1.06143 0.85887 0.80253 0.79631 0.78129 1.19900 1.21967 1.17538 0.92074 0.91493 0.93607 0.94390 0.91053 0.93780 0.92581 0.92917 0.92069 0.92131 0.90421 0.90353 0.92256 0.92143 0.90596 0.96281 0.92468 0.83235 0.92491 0.91890 0.92107 0.96469 0.96844 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.79 16 2 C -0.12 -3.53 5.55 30.59 0.17 -3.36 16 3 C 0.06 1.96 3.51 86.30 0.30 2.26 16 4 N -0.53 -18.50 3.14 -870.98 -2.74 -21.24 16 5 C 0.07 1.94 3.88 86.30 0.33 2.28 16 6 C 0.09 2.56 2.41 44.94 0.11 2.67 16 7 H 0.04 1.19 4.79 -2.39 -0.01 1.18 16 8 C -0.11 -2.47 5.37 30.64 0.16 -2.31 16 9 C -0.11 -2.31 6.00 30.67 0.18 -2.13 16 10 C -0.11 -2.60 6.09 30.65 0.19 -2.41 16 11 C 0.06 1.67 6.55 86.33 0.57 2.24 16 12 N -0.69 -23.68 6.50 -491.69 -3.20 -26.87 16 13 C 0.10 3.89 2.17 44.91 0.10 3.98 16 14 H 0.06 2.39 7.76 -2.39 -0.02 2.37 16 15 C -0.17 -5.09 8.57 71.98 0.62 -4.48 16 16 C 0.00 -0.21 3.46 29.84 0.10 -0.11 16 17 C -0.48 -27.04 9.38 25.60 0.24 -26.80 16 18 H 0.04 2.80 7.99 -2.91 -0.02 2.77 16 19 C 0.00 -0.03 5.47 84.66 0.46 0.44 16 20 N -0.96 -60.96 13.96 21.45 0.30 -60.66 16 21 Si 0.94 45.32 27.47 68.60 1.88 47.20 16 22 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.95 5.08 -2.39 -0.01 1.94 16 30 H 0.04 1.20 7.01 -2.38 -0.02 1.18 16 31 H 0.06 2.03 5.76 -2.38 -0.01 2.01 16 32 H 0.05 1.32 7.45 -2.39 -0.02 1.31 16 33 H 0.06 1.90 7.51 -2.38 -0.02 1.88 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.02 0.56 8.14 -2.39 -0.02 0.55 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 42 H 0.35 14.59 8.01 -89.69 -0.72 13.87 16 43 H 0.06 1.61 6.74 -2.39 -0.02 1.59 16 44 H 0.06 1.60 7.55 -2.38 -0.02 1.58 16 45 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 46 H 0.02 0.79 5.20 -2.38 -0.01 0.78 16 47 H 0.01 0.61 7.57 -2.38 -0.02 0.59 16 48 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -63.71 352.73 0.63 -63.08 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.13 Total: 29.01 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.25 Total: -30.52 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -5.63 Total: -108.77 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -63.71 0.63 -63.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834930.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.585 kcal (2) G-P(sol) polarization free energy of solvation -63.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds