Wall clock time and date at job start Mon Mar 30 2020 07:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46845 * 2 1 4 4 N 1.46895 * 109.47096 * 184.54539 * 3 2 1 5 5 C 1.46903 * 111.00025 * 199.63858 * 4 3 2 6 6 C 1.52993 * 109.47137 * 76.61328 * 5 4 3 7 7 H 1.09001 * 109.46600 * 57.13038 * 6 5 4 8 8 C 1.53042 * 109.46388 * 177.09543 * 6 5 4 9 9 C 1.53110 * 109.27995 * 179.19629 * 8 6 5 10 10 C 1.53118 * 109.16278 * 302.34619 * 9 8 6 11 11 C 1.53039 * 109.27878 * 57.65286 * 10 9 8 12 12 N 1.46841 * 109.52451 * 300.82630 * 11 10 9 13 13 C 1.46898 * 111.00065 * 75.68088 * 4 3 2 14 14 H 1.09001 * 109.47687 * 313.63976 * 13 4 3 15 15 C 1.52999 * 109.47026 * 73.64426 * 13 4 3 16 16 C 1.53000 * 109.47189 * 193.63989 * 13 4 3 17 17 C 1.50701 * 109.47057 * 64.37949 * 16 13 4 18 18 H 1.07999 * 119.99908 * 5.02633 * 17 16 13 19 19 C 1.37877 * 120.00145 * 185.03679 * 17 16 13 20 20 N 1.31512 * 119.99909 * 354.83801 * 19 17 16 21 21 Si 1.86801 * 120.00070 * 174.84493 * 19 17 16 22 22 H 1.48493 * 109.47387 * 94.99226 * 21 19 17 23 23 H 1.48504 * 109.46990 * 214.98810 * 21 19 17 24 24 H 1.48502 * 109.47053 * 334.98685 * 21 19 17 25 25 H 1.08996 * 109.46980 * 64.95150 * 1 2 3 26 26 H 1.09005 * 109.46654 * 184.94786 * 1 2 3 27 27 H 1.08993 * 109.47395 * 304.94546 * 1 2 3 28 28 H 1.08997 * 109.47319 * 239.99842 * 2 1 3 29 29 H 1.08994 * 109.46911 * 119.99505 * 2 1 3 30 30 H 1.08996 * 109.47337 * 64.54434 * 3 2 1 31 31 H 1.09004 * 109.46736 * 304.54007 * 3 2 1 32 32 H 1.09005 * 109.46685 * 196.61389 * 5 4 3 33 33 H 1.08997 * 109.46819 * 316.61034 * 5 4 3 34 34 H 1.09002 * 109.49772 * 299.13851 * 8 6 5 35 35 H 1.08997 * 109.49942 * 59.25151 * 8 6 5 36 36 H 1.09003 * 109.52245 * 182.43939 * 9 8 6 37 37 H 1.09007 * 109.52849 * 62.25164 * 9 8 6 38 38 H 1.09006 * 109.50272 * 297.71880 * 10 9 8 39 39 H 1.08995 * 109.50522 * 177.59864 * 10 9 8 40 40 H 1.08999 * 109.46477 * 180.80960 * 11 10 9 41 41 H 1.09005 * 109.45384 * 60.83412 * 11 10 9 42 42 H 1.00902 * 110.99970 * 297.64147 * 12 11 10 43 43 H 1.09003 * 109.47480 * 179.97438 * 15 13 4 44 44 H 1.08998 * 109.47514 * 59.99746 * 15 13 4 45 45 H 1.09001 * 109.47283 * 299.99500 * 15 13 4 46 46 H 1.08999 * 109.47566 * 184.37918 * 16 13 4 47 47 H 1.09005 * 109.47586 * 304.37812 * 16 13 4 48 48 H 0.97003 * 120.00071 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5048 1.4441 -0.1098 5 6 4.0655 2.7237 0.3445 6 6 4.0506 2.7728 1.8736 7 1 4.6073 1.9236 2.2697 8 6 4.7007 4.0744 2.3483 9 6 4.6656 4.1285 3.8780 10 6 3.2138 4.0171 4.3517 11 6 2.6067 2.7172 3.8189 12 7 2.6634 2.7143 2.3516 13 6 3.9302 1.1406 -1.4827 14 1 3.3698 0.2834 -1.8557 15 6 3.6648 2.3523 -2.3783 16 6 5.4254 0.8163 -1.4934 17 6 5.6726 -0.4400 -0.6986 18 1 4.8393 -1.0001 -0.3009 19 6 6.9627 -0.8741 -0.4789 20 7 7.9719 -0.2509 -1.0468 21 14 7.2770 -2.3478 0.6252 22 1 7.3827 -3.5746 -0.2048 23 1 8.5442 -2.1451 1.3725 24 1 6.1540 -2.4951 1.5857 25 1 -0.3633 0.4351 -0.9310 26 1 -0.3633 -1.0239 0.0886 27 1 -0.3634 0.5886 0.8423 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.7447 1.9323 0.9278 31 1 1.6117 1.9793 -0.8466 32 1 5.0912 2.8179 -0.0122 33 1 3.4664 3.5437 -0.0513 34 1 5.7351 4.1102 2.0065 35 1 4.1528 4.9243 1.9414 36 1 5.0885 5.0735 4.2189 37 1 5.2461 3.3006 4.2853 38 1 2.6424 4.8661 3.9763 39 1 3.1858 4.0121 5.4413 40 1 1.5686 2.6418 4.1424 41 1 3.1703 1.8681 4.2058 42 1 2.1163 3.4700 1.9671 43 1 3.9809 2.1274 -3.3970 44 1 4.2253 3.2096 -2.0054 45 1 2.5996 2.5835 -2.3708 46 1 5.7576 0.6674 -2.5208 47 1 5.9798 1.6427 -1.0486 48 1 8.8795 -0.5565 -0.8926 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834932.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:49 Heat of formation + Delta-G solvation = -14.310124 kcal Electronic energy + Delta-G solvation = -22537.527671 eV Core-core repulsion = 19626.443736 eV Total energy + Delta-G solvation = -2911.083935 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.25246 -37.39937 -33.57004 -32.66422 -31.86794 -31.38387 -29.42306 -27.20191 -26.38091 -23.99431 -23.33743 -22.68184 -21.22425 -20.72416 -20.15997 -18.31107 -16.12828 -15.79078 -15.27370 -14.91430 -14.68470 -14.44381 -14.19286 -13.85905 -13.80160 -13.40251 -12.81300 -12.80359 -12.46146 -12.10409 -12.00045 -11.72781 -11.57905 -11.44072 -11.29631 -11.05096 -11.01031 -10.91193 -10.62749 -10.54771 -10.46954 -10.37654 -10.30039 -10.14248 -10.09485 -9.62201 -9.05984 -8.85514 -8.17722 -7.91709 -7.18337 -5.81666 -3.77223 3.42891 3.49539 3.56364 4.41052 4.61009 4.64285 4.84840 4.98683 5.03966 5.32211 5.48958 5.50353 5.54861 5.55493 5.62409 5.65777 5.78994 5.81768 5.87105 5.89804 5.96643 6.02366 6.05627 6.09037 6.10071 6.17217 6.20151 6.25204 6.33596 6.35114 6.42658 6.49954 6.65355 6.68459 6.79657 6.91525 6.96908 7.17895 7.28101 7.60175 7.70981 7.81604 8.12310 8.21762 8.28341 8.68823 9.28075 9.83329 11.30526 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.007091 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.562853 B = 3947.781415 C = 4758.803299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.034 3.966 4 N -0.499 5.499 5 C 0.070 3.930 6 C 0.094 3.906 7 H 0.095 0.905 8 C -0.151 4.151 9 C -0.118 4.118 10 C -0.156 4.156 11 C 0.055 3.945 12 N -0.664 5.664 13 C 0.083 3.917 14 H 0.068 0.932 15 C -0.182 4.182 16 C 0.031 3.969 17 C -0.480 4.480 18 H 0.059 0.941 19 C 0.050 3.950 20 N -0.906 5.906 21 Si 0.885 3.115 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.273 1.273 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.010 0.990 32 H 0.084 0.916 33 H 0.017 0.983 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.330 0.670 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.039 0.961 46 H 0.013 0.987 47 H 0.019 0.981 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.941 9.066 7.048 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.094 4.094 4 N -0.221 5.221 5 C -0.059 4.059 6 C -0.016 4.016 7 H 0.113 0.887 8 C -0.191 4.191 9 C -0.156 4.156 10 C -0.195 4.195 11 C -0.074 4.074 12 N -0.293 5.293 13 C -0.025 4.025 14 H 0.086 0.914 15 C -0.241 4.241 16 C -0.006 4.006 17 C -0.519 4.519 18 H 0.077 0.923 19 C -0.149 4.149 20 N -0.547 5.547 21 Si 0.714 3.286 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.198 1.198 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.028 0.972 32 H 0.102 0.898 33 H 0.035 0.965 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.147 0.853 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.031 0.969 47 H 0.037 0.963 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.614 7.977 7.300 15.868 hybrid contribution 0.318 0.815 0.217 0.902 sum -11.296 8.792 7.517 16.168 Atomic orbital electron populations 1.21720 0.97127 1.00721 1.00800 1.21410 0.93496 0.97821 1.02405 1.22705 0.88408 0.96477 1.01807 1.61880 1.07614 1.29888 1.22712 1.22027 1.00554 0.90395 0.92931 1.21677 0.88031 0.96401 0.95516 0.88731 1.22245 1.02240 0.99063 0.95575 1.21534 0.96413 1.01602 0.96029 1.22257 0.96963 0.99504 1.00788 1.22026 1.00441 0.96372 0.88577 1.60866 1.12073 1.49628 1.06718 1.21958 1.00421 0.94601 0.85560 0.91391 1.22527 0.99628 1.00772 1.01186 1.19181 0.87806 0.97005 0.96594 1.21147 0.91609 1.07922 1.31184 0.92257 1.24973 0.96546 0.96955 0.96414 1.69977 0.98679 1.41572 1.44488 0.86684 0.77458 0.83278 0.81208 1.21251 1.21669 1.19801 0.93716 0.93450 0.93154 0.92612 0.91586 0.87093 0.97232 0.89754 0.96469 0.91132 0.92607 0.92527 0.91728 0.92497 0.92032 0.91312 0.90829 0.85272 0.92914 0.93197 0.94247 0.96929 0.96329 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.11 -1.83 6.10 -26.73 -0.16 -1.99 16 3 C 0.03 0.55 4.62 -3.83 -0.02 0.53 16 4 N -0.50 -9.41 3.98 -226.65 -0.90 -10.31 16 5 C 0.07 1.19 3.28 -3.83 -0.01 1.18 16 6 C 0.09 1.41 2.67 -67.72 -0.18 1.23 16 7 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 8 C -0.15 -1.95 5.36 -26.65 -0.14 -2.10 16 9 C -0.12 -1.35 6.00 -26.61 -0.16 -1.51 16 10 C -0.16 -1.58 6.08 -26.65 -0.16 -1.74 16 11 C 0.06 0.62 6.55 -3.84 -0.03 0.60 16 12 N -0.66 -8.55 3.63 -106.76 -0.39 -8.93 16 13 C 0.08 1.71 2.14 -67.71 -0.15 1.56 16 14 H 0.07 1.46 6.51 -51.93 -0.34 1.13 16 15 C -0.18 -3.23 8.50 37.16 0.32 -2.91 16 16 C 0.03 0.80 4.43 -27.88 -0.12 0.67 16 17 C -0.48 -13.51 8.82 -34.44 -0.30 -13.82 16 18 H 0.06 1.68 7.75 -52.49 -0.41 1.28 16 19 C 0.05 1.44 5.45 -17.82 -0.10 1.35 16 20 N -0.91 -27.48 13.29 55.43 0.74 -26.74 16 21 Si 0.88 22.35 29.54 -169.99 -5.02 17.33 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.99 6.65 -51.93 -0.35 0.64 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.11 1.66 4.34 -51.93 -0.23 1.43 16 31 H 0.01 0.15 6.40 -51.93 -0.33 -0.18 16 32 H 0.08 1.65 5.86 -51.93 -0.30 1.35 16 33 H 0.02 0.27 7.38 -51.93 -0.38 -0.11 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.33 3.85 8.31 -39.29 -0.33 3.52 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.87 6.64 -51.93 -0.34 0.52 16 45 H 0.04 0.63 6.64 -51.93 -0.34 0.29 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.02 0.50 6.30 -51.93 -0.33 0.17 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -29.26 354.90 -10.23 -39.49 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -9.15 Total: 2.29 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -0.85 Total: -18.47 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.55 Total: -45.98 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.26 -10.23 -39.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834932.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.176 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds