Wall clock time and date at job start Mon Mar 30 2020 07:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46845 * 2 1 4 4 N 1.46895 * 109.47096 * 184.54539 * 3 2 1 5 5 C 1.46903 * 111.00025 * 199.63858 * 4 3 2 6 6 C 1.52993 * 109.47137 * 76.61328 * 5 4 3 7 7 H 1.09001 * 109.46600 * 57.13038 * 6 5 4 8 8 C 1.53042 * 109.46388 * 177.09543 * 6 5 4 9 9 C 1.53110 * 109.27995 * 179.19629 * 8 6 5 10 10 C 1.53118 * 109.16278 * 302.34619 * 9 8 6 11 11 C 1.53039 * 109.27878 * 57.65286 * 10 9 8 12 12 N 1.46841 * 109.52451 * 300.82630 * 11 10 9 13 13 C 1.46898 * 111.00065 * 75.68088 * 4 3 2 14 14 H 1.09001 * 109.47687 * 313.63976 * 13 4 3 15 15 C 1.52999 * 109.47026 * 73.64426 * 13 4 3 16 16 C 1.53000 * 109.47189 * 193.63989 * 13 4 3 17 17 C 1.50701 * 109.47057 * 64.37949 * 16 13 4 18 18 H 1.07999 * 119.99908 * 5.02633 * 17 16 13 19 19 C 1.37877 * 120.00145 * 185.03679 * 17 16 13 20 20 N 1.31512 * 119.99909 * 354.83801 * 19 17 16 21 21 Si 1.86801 * 120.00070 * 174.84493 * 19 17 16 22 22 H 1.48493 * 109.47387 * 94.99226 * 21 19 17 23 23 H 1.48504 * 109.46990 * 214.98810 * 21 19 17 24 24 H 1.48502 * 109.47053 * 334.98685 * 21 19 17 25 25 H 1.08996 * 109.46980 * 64.95150 * 1 2 3 26 26 H 1.09005 * 109.46654 * 184.94786 * 1 2 3 27 27 H 1.08993 * 109.47395 * 304.94546 * 1 2 3 28 28 H 1.08997 * 109.47319 * 239.99842 * 2 1 3 29 29 H 1.08994 * 109.46911 * 119.99505 * 2 1 3 30 30 H 1.08996 * 109.47337 * 64.54434 * 3 2 1 31 31 H 1.09004 * 109.46736 * 304.54007 * 3 2 1 32 32 H 1.09005 * 109.46685 * 196.61389 * 5 4 3 33 33 H 1.08997 * 109.46819 * 316.61034 * 5 4 3 34 34 H 1.09002 * 109.49772 * 299.13851 * 8 6 5 35 35 H 1.08997 * 109.49942 * 59.25151 * 8 6 5 36 36 H 1.09003 * 109.52245 * 182.43939 * 9 8 6 37 37 H 1.09007 * 109.52849 * 62.25164 * 9 8 6 38 38 H 1.09006 * 109.50272 * 297.71880 * 10 9 8 39 39 H 1.08995 * 109.50522 * 177.59864 * 10 9 8 40 40 H 1.08999 * 109.46477 * 180.80960 * 11 10 9 41 41 H 1.09005 * 109.45384 * 60.83412 * 11 10 9 42 42 H 1.00902 * 110.99970 * 297.64147 * 12 11 10 43 43 H 1.09003 * 109.47480 * 179.97438 * 15 13 4 44 44 H 1.08998 * 109.47514 * 59.99746 * 15 13 4 45 45 H 1.09001 * 109.47283 * 299.99500 * 15 13 4 46 46 H 1.08999 * 109.47566 * 184.37918 * 16 13 4 47 47 H 1.09005 * 109.47586 * 304.37812 * 16 13 4 48 48 H 0.97003 * 120.00071 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5048 1.4441 -0.1098 5 6 4.0655 2.7237 0.3445 6 6 4.0506 2.7728 1.8736 7 1 4.6073 1.9236 2.2697 8 6 4.7007 4.0744 2.3483 9 6 4.6656 4.1285 3.8780 10 6 3.2138 4.0171 4.3517 11 6 2.6067 2.7172 3.8189 12 7 2.6634 2.7143 2.3516 13 6 3.9302 1.1406 -1.4827 14 1 3.3698 0.2834 -1.8557 15 6 3.6648 2.3523 -2.3783 16 6 5.4254 0.8163 -1.4934 17 6 5.6726 -0.4400 -0.6986 18 1 4.8393 -1.0001 -0.3009 19 6 6.9627 -0.8741 -0.4789 20 7 7.9719 -0.2509 -1.0468 21 14 7.2770 -2.3478 0.6252 22 1 7.3827 -3.5746 -0.2048 23 1 8.5442 -2.1451 1.3725 24 1 6.1540 -2.4951 1.5857 25 1 -0.3633 0.4351 -0.9310 26 1 -0.3633 -1.0239 0.0886 27 1 -0.3634 0.5886 0.8423 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.7447 1.9323 0.9278 31 1 1.6117 1.9793 -0.8466 32 1 5.0912 2.8179 -0.0122 33 1 3.4664 3.5437 -0.0513 34 1 5.7351 4.1102 2.0065 35 1 4.1528 4.9243 1.9414 36 1 5.0885 5.0735 4.2189 37 1 5.2461 3.3006 4.2853 38 1 2.6424 4.8661 3.9763 39 1 3.1858 4.0121 5.4413 40 1 1.5686 2.6418 4.1424 41 1 3.1703 1.8681 4.2058 42 1 2.1163 3.4700 1.9671 43 1 3.9809 2.1274 -3.3970 44 1 4.2253 3.2096 -2.0054 45 1 2.5996 2.5835 -2.3708 46 1 5.7576 0.6674 -2.5208 47 1 5.9798 1.6427 -1.0486 48 1 8.8795 -0.5565 -0.8926 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834932.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:49 Heat of formation + Delta-G solvation = -31.265227 kcal Electronic energy + Delta-G solvation = -22538.262899 eV Core-core repulsion = 19626.443736 eV Total energy + Delta-G solvation = -2911.819164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48135 -38.73409 -35.28844 -34.24220 -33.28211 -32.46193 -30.88568 -29.08458 -27.57317 -25.56447 -24.59011 -24.17895 -22.57555 -21.96836 -21.23990 -19.86305 -18.33602 -17.09478 -16.71185 -16.42601 -15.98891 -15.76469 -15.46007 -15.12467 -14.89794 -14.64056 -14.51987 -13.92410 -13.86747 -13.61805 -13.57622 -13.13423 -12.99841 -12.89971 -12.61746 -12.48797 -12.42389 -12.34100 -12.14386 -11.99847 -11.94516 -11.79792 -11.66265 -11.45640 -11.30202 -11.10980 -10.99210 -10.86048 -10.43848 -9.00117 -8.62507 -8.07621 -6.09967 1.39596 1.40593 1.53430 2.48383 3.19404 3.30441 3.39133 3.89992 3.98007 4.09920 4.19711 4.28803 4.34816 4.38246 4.43720 4.44925 4.55027 4.56550 4.62505 4.72831 4.75729 4.84360 4.91493 4.94399 5.01727 5.05076 5.08813 5.12803 5.16291 5.20101 5.22926 5.28249 5.29585 5.34120 5.39060 5.47285 5.54221 5.64737 5.71024 5.75130 5.93994 6.19570 6.42317 6.63367 6.70435 6.78379 7.02757 7.54449 9.04508 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.007091 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.562853 B = 3947.781415 C = 4758.803299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.039 3.961 4 N -0.520 5.520 5 C 0.075 3.925 6 C 0.105 3.895 7 H 0.053 0.947 8 C -0.146 4.146 9 C -0.118 4.118 10 C -0.147 4.147 11 C 0.056 3.944 12 N -0.668 5.668 13 C 0.092 3.908 14 H 0.057 0.943 15 C -0.171 4.171 16 C 0.039 3.961 17 C -0.487 4.487 18 H 0.052 0.948 19 C -0.003 4.003 20 N -0.940 5.940 21 Si 0.950 3.050 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.269 1.269 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.129 0.871 31 H 0.019 0.981 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.342 0.658 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.063 0.937 46 H -0.016 1.016 47 H -0.003 1.003 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.288 10.039 8.391 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.088 4.088 4 N -0.243 5.243 5 C -0.053 4.053 6 C -0.005 4.005 7 H 0.071 0.929 8 C -0.186 4.186 9 C -0.156 4.156 10 C -0.186 4.186 11 C -0.073 4.073 12 N -0.298 5.298 13 C -0.017 4.017 14 H 0.075 0.925 15 C -0.230 4.230 16 C 0.002 3.998 17 C -0.526 4.526 18 H 0.070 0.930 19 C -0.199 4.199 20 N -0.583 5.583 21 Si 0.776 3.224 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.194 1.194 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.146 0.854 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.161 0.839 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.003 0.997 47 H 0.015 0.985 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.981 8.954 8.647 18.719 hybrid contribution 1.052 0.505 -0.204 1.185 sum -12.929 9.460 8.443 18.109 Atomic orbital electron populations 1.21635 0.94179 1.01664 1.01954 1.21387 0.96045 0.97361 1.00228 1.22773 0.86340 0.96708 1.02988 1.61799 1.09706 1.31296 1.21463 1.21948 0.98765 0.90293 0.94342 1.21341 0.89306 0.95999 0.93899 0.92864 1.22172 1.01173 0.98304 0.96918 1.21538 0.97658 1.01746 0.94609 1.22180 0.95615 0.99109 1.01667 1.22053 1.01552 0.96437 0.87248 1.60694 1.10558 1.50451 1.08103 1.21621 0.96639 0.95736 0.87679 0.92480 1.22380 1.01173 0.99206 1.00265 1.19031 0.91300 0.95385 0.94101 1.21404 0.91475 1.08663 1.31057 0.92951 1.25766 0.96437 0.99890 0.97787 1.70098 0.99045 1.43271 1.45859 0.85661 0.77345 0.80009 0.79385 1.20365 1.21182 1.19386 0.92751 0.92775 0.91652 0.94912 0.93669 0.85404 0.96290 0.93163 0.94340 0.92896 0.90849 0.91079 0.93285 0.91046 0.90559 0.89150 0.92762 0.83872 0.92980 0.93048 0.91795 0.99739 0.98461 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.91 71.98 0.71 -2.48 16 2 C -0.11 -3.53 6.10 30.60 0.19 -3.35 16 3 C 0.04 1.21 4.62 86.31 0.40 1.61 16 4 N -0.52 -19.76 3.98 -871.00 -3.47 -23.23 16 5 C 0.08 2.57 3.28 86.30 0.28 2.86 16 6 C 0.11 3.17 2.67 44.94 0.12 3.29 16 7 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 8 C -0.15 -3.66 5.36 30.64 0.16 -3.50 16 9 C -0.12 -2.52 6.00 30.67 0.18 -2.34 16 10 C -0.15 -2.54 6.08 30.65 0.19 -2.35 16 11 C 0.06 1.14 6.55 86.33 0.57 1.71 16 12 N -0.67 -15.96 3.63 -491.69 -1.79 -17.74 16 13 C 0.09 3.87 2.14 44.92 0.10 3.97 16 14 H 0.06 2.52 6.51 -2.39 -0.02 2.50 16 15 C -0.17 -5.97 8.50 71.98 0.61 -5.36 16 16 C 0.04 2.09 4.43 29.85 0.13 2.22 16 17 C -0.49 -28.46 8.82 25.60 0.23 -28.23 16 18 H 0.05 3.07 7.75 -2.91 -0.02 3.05 16 19 C 0.00 -0.19 5.45 84.66 0.46 0.27 16 20 N -0.94 -58.80 13.29 21.45 0.29 -58.52 16 21 Si 0.95 46.88 29.54 68.60 2.03 48.91 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.03 1.16 6.65 -2.39 -0.02 1.14 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.13 3.51 4.34 -2.39 -0.01 3.50 16 31 H 0.02 0.56 6.40 -2.38 -0.02 0.54 16 32 H 0.05 2.06 5.86 -2.38 -0.01 2.05 16 33 H 0.04 1.15 7.38 -2.39 -0.02 1.13 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.34 6.86 8.31 -89.69 -0.75 6.11 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 1.76 6.64 -2.39 -0.02 1.75 16 45 H 0.06 1.91 6.64 -2.39 -0.02 1.90 16 46 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 47 H 0.00 -0.16 6.30 -2.38 -0.02 -0.18 16 48 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -65.27 354.90 1.55 -63.73 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.16 Total: 18.54 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: 4.33 Total: -31.69 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -4.97 Total: -99.49 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -65.27 1.55 -63.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834932.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.464 kcal (2) G-P(sol) polarization free energy of solvation -65.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds