Wall clock time and date at job start Mon Mar 30 2020 07:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 N 1.46910 * 109.47113 * 183.85194 * 3 2 1 5 5 C 1.46892 * 111.00042 * 171.24998 * 4 3 2 6 6 C 1.53000 * 109.47271 * 293.95262 * 5 4 3 7 7 H 1.08997 * 109.50558 * 55.07393 * 6 5 4 8 8 C 1.53117 * 109.54001 * 175.13980 * 6 5 4 9 9 C 1.53121 * 109.16038 * 177.57386 * 8 6 5 10 10 C 1.53039 * 109.31028 * 302.40366 * 9 8 6 11 11 N 1.46848 * 109.52229 * 59.15959 * 10 9 8 12 12 C 1.46848 * 111.19848 * 298.25627 * 11 10 9 13 13 C 1.46900 * 110.99418 * 295.20320 * 4 3 2 14 14 H 1.09001 * 109.47782 * 47.70846 * 13 4 3 15 15 C 1.53003 * 109.47163 * 287.70451 * 13 4 3 16 16 C 1.53006 * 109.46973 * 167.71141 * 13 4 3 17 17 C 1.50697 * 109.46690 * 294.55322 * 16 13 4 18 18 H 1.08000 * 120.00309 * 354.96595 * 17 16 13 19 19 C 1.37877 * 120.00132 * 174.96487 * 17 16 13 20 20 N 1.31516 * 119.99388 * 5.13332 * 19 17 16 21 21 Si 1.86797 * 120.00516 * 185.12942 * 19 17 16 22 22 H 1.48497 * 109.47022 * 94.99455 * 21 19 17 23 23 H 1.48494 * 109.47615 * 214.99640 * 21 19 17 24 24 H 1.48507 * 109.47034 * 334.99785 * 21 19 17 25 25 H 1.08995 * 109.47068 * 184.94779 * 1 2 3 26 26 H 1.08994 * 109.46750 * 304.95489 * 1 2 3 27 27 H 1.08998 * 109.46827 * 64.95114 * 1 2 3 28 28 H 1.09003 * 109.47066 * 239.99960 * 2 1 3 29 29 H 1.09002 * 109.47112 * 119.99962 * 2 1 3 30 30 H 1.09000 * 109.47530 * 63.85249 * 3 2 1 31 31 H 1.08997 * 109.47154 * 303.84570 * 3 2 1 32 32 H 1.09002 * 109.47171 * 173.95161 * 5 4 3 33 33 H 1.09007 * 109.47353 * 53.95124 * 5 4 3 34 34 H 1.09006 * 109.49412 * 57.68951 * 8 6 5 35 35 H 1.09001 * 109.55919 * 297.49643 * 8 6 5 36 36 H 1.08997 * 109.50624 * 182.44376 * 9 8 6 37 37 H 1.09001 * 109.50269 * 62.36492 * 9 8 6 38 38 H 1.08999 * 109.46325 * 179.17947 * 10 9 8 39 39 H 1.09001 * 109.45911 * 299.14320 * 10 9 8 40 40 H 1.00897 * 111.00081 * 62.35215 * 11 10 9 41 41 H 1.08993 * 109.46239 * 181.75995 * 12 11 10 42 42 H 1.09006 * 109.46600 * 301.73844 * 12 11 10 43 43 H 1.09000 * 109.46778 * 60.00288 * 15 13 4 44 44 H 1.08998 * 109.47394 * 180.02562 * 15 13 4 45 45 H 1.09000 * 109.47599 * 300.00674 * 15 13 4 46 46 H 1.08993 * 109.47069 * 54.54898 * 16 13 4 47 47 H 1.08996 * 109.46989 * 174.55482 * 16 13 4 48 48 H 0.97008 * 119.99579 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5062 1.4435 -0.0930 5 6 4.0193 2.8036 -0.3042 6 6 3.5673 3.3123 -1.6745 7 1 2.4821 3.2422 -1.7490 8 6 3.9975 4.7716 -1.8466 9 6 3.5947 5.2531 -3.2432 10 6 4.2372 4.3468 -4.2958 11 7 3.7929 2.9625 -4.0886 12 6 4.2105 2.4622 -2.7726 13 6 4.1096 0.8322 1.0987 14 1 3.6077 -0.1103 1.3173 15 6 3.9573 1.7796 2.2904 16 6 5.5951 0.5714 0.8413 17 6 5.7426 -0.4636 -0.2441 18 1 4.8676 -0.9516 -0.6475 19 6 6.9946 -0.7875 -0.7223 20 7 8.0662 -0.2692 -0.1633 21 14 7.1686 -1.9626 -2.1639 22 1 7.2766 -1.1861 -3.4251 23 1 8.3898 -2.7883 -1.9849 24 1 5.9777 -2.8475 -2.2278 25 1 -0.3633 -1.0238 0.0886 26 1 -0.3632 0.5888 0.8422 27 1 -0.3633 0.4351 -0.9310 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7342 1.9361 0.9225 31 1 1.6215 1.9758 -0.8535 32 1 5.1084 2.7917 -0.2622 33 1 3.6329 3.4626 0.4735 34 1 5.0790 4.8479 -1.7329 35 1 3.5069 5.3880 -1.0933 36 1 3.9368 6.2778 -3.3876 37 1 2.5099 5.2142 -3.3426 38 1 3.9402 4.6785 -5.2907 39 1 5.3222 4.3975 -4.2051 40 1 2.7940 2.8820 -4.2056 41 1 3.8942 1.4251 -2.6613 42 1 5.2957 2.5218 -2.6890 43 1 2.8990 1.9655 2.4738 44 1 4.4054 1.3263 3.1746 45 1 4.4591 2.7222 2.0719 46 1 6.0777 1.4972 0.5284 47 1 6.0640 0.2082 1.7558 48 1 8.9471 -0.4973 -0.4995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695843595.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:27 Heat of formation + Delta-G solvation = -21.833080 kcal Electronic energy + Delta-G solvation = -22570.378518 eV Core-core repulsion = 19658.968363 eV Total energy + Delta-G solvation = -2911.410155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.22853 -37.57936 -33.70357 -32.89185 -31.93344 -31.17511 -29.41869 -27.24874 -26.10986 -24.15052 -23.26130 -22.82239 -21.33605 -21.15504 -19.86859 -18.22784 -16.15366 -15.79274 -15.30904 -15.08774 -14.86002 -14.48204 -14.30302 -14.13660 -13.69211 -13.12651 -12.83087 -12.60532 -12.53222 -12.22361 -11.90276 -11.79445 -11.75327 -11.50194 -11.34734 -11.20551 -11.01838 -10.93132 -10.73311 -10.69720 -10.57110 -10.46406 -10.32957 -10.07957 -9.95141 -9.61378 -9.12487 -8.89924 -8.20078 -8.05652 -7.38194 -5.84438 -3.80996 3.44419 3.51068 3.54400 4.47465 4.60605 4.61866 4.90149 5.07067 5.17646 5.23031 5.29795 5.37322 5.49980 5.53222 5.66973 5.68499 5.74959 5.77738 5.81908 5.84737 5.89065 5.95067 6.01787 6.02413 6.09428 6.10411 6.18269 6.21683 6.28654 6.30728 6.36612 6.48142 6.59404 6.63785 6.68667 6.75082 6.92727 7.06435 7.35723 7.59410 7.68493 7.71666 7.96697 8.09280 8.16869 8.62791 9.23815 9.80381 11.27543 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.007960 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.138826 B = 3516.878281 C = 4610.585282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.052 3.948 4 N -0.506 5.506 5 C 0.065 3.935 6 C -0.115 4.115 7 H 0.062 0.938 8 C -0.115 4.115 9 C -0.154 4.154 10 C 0.056 3.944 11 N -0.688 5.688 12 C 0.072 3.928 13 C 0.084 3.916 14 H 0.072 0.928 15 C -0.183 4.183 16 C 0.032 3.968 17 C -0.484 4.484 18 H 0.059 0.941 19 C 0.053 3.947 20 N -0.904 5.904 21 Si 0.885 3.115 22 H -0.282 1.282 23 H -0.292 1.292 24 H -0.275 1.275 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.333 0.667 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.020 0.980 47 H 0.014 0.986 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.337 8.806 -2.224 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.077 4.077 4 N -0.229 5.229 5 C -0.063 4.063 6 C -0.136 4.136 7 H 0.080 0.920 8 C -0.154 4.154 9 C -0.193 4.193 10 C -0.074 4.074 11 N -0.315 5.315 12 C -0.057 4.057 13 C -0.024 4.024 14 H 0.091 0.909 15 C -0.242 4.242 16 C -0.006 4.006 17 C -0.523 4.523 18 H 0.077 0.923 19 C -0.147 4.147 20 N -0.545 5.545 21 Si 0.714 3.286 22 H -0.208 1.208 23 H -0.218 1.218 24 H -0.200 1.200 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.149 0.851 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.038 0.962 47 H 0.032 0.968 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.457 8.216 -2.999 14.414 hybrid contribution -0.642 0.503 0.620 1.024 sum -12.099 8.720 -2.380 15.103 Atomic orbital electron populations 1.21735 0.96624 1.01148 1.01069 1.21533 0.94147 0.97076 1.03146 1.22160 0.89880 0.96532 0.99088 1.62121 1.03251 1.18251 1.39230 1.22050 1.01531 0.88837 0.93918 1.21870 0.99883 0.94541 0.97297 0.92004 1.21596 1.01510 0.96149 0.96109 1.22236 1.00474 0.99960 0.96641 1.22006 1.00426 0.87731 0.97251 1.60717 1.18913 1.19793 1.32097 1.22021 1.00553 0.99252 0.83909 1.21970 0.99686 0.95312 0.85460 0.90948 1.22516 0.99709 1.01243 1.00776 1.19178 0.87496 0.97170 0.96710 1.21105 0.91975 1.20539 1.18636 0.92320 1.24962 0.96166 0.96612 0.96927 1.69979 0.97624 1.45589 1.41273 0.86681 0.77180 0.81111 0.83619 1.20777 1.21847 1.20030 0.92976 0.93408 0.93148 0.90882 0.91919 0.96115 0.91781 0.89571 0.96185 0.91704 0.92665 0.92040 0.92527 0.91522 0.91042 0.85070 0.88753 0.90783 0.94298 0.92703 0.93014 0.96227 0.96825 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.12 -1.77 5.76 -26.73 -0.15 -1.92 16 3 C 0.05 0.78 4.71 -3.82 -0.02 0.76 16 4 N -0.51 -9.04 3.65 -226.64 -0.83 -9.87 16 5 C 0.07 1.10 3.23 -3.83 -0.01 1.09 16 6 C -0.12 -1.69 2.26 -90.54 -0.20 -1.89 16 7 H 0.06 0.87 6.19 -51.93 -0.32 0.55 16 8 C -0.12 -1.50 5.29 -26.61 -0.14 -1.64 16 9 C -0.15 -1.74 6.08 -26.65 -0.16 -1.90 16 10 C 0.06 0.69 6.56 -3.83 -0.03 0.67 16 11 N -0.69 -9.89 6.87 -113.81 -0.78 -10.68 16 12 C 0.07 1.19 5.72 -3.83 -0.02 1.17 16 13 C 0.08 1.65 2.12 -67.71 -0.14 1.51 16 14 H 0.07 1.47 6.03 -51.93 -0.31 1.16 16 15 C -0.18 -3.15 8.42 37.16 0.31 -2.84 16 16 C 0.03 0.78 4.43 -27.88 -0.12 0.66 16 17 C -0.48 -13.24 8.84 -34.44 -0.30 -13.55 16 18 H 0.06 1.61 7.75 -52.49 -0.41 1.20 16 19 C 0.05 1.50 5.45 -17.82 -0.10 1.40 16 20 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 21 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.06 0.97 6.46 -51.93 -0.34 0.64 16 30 H 0.02 0.31 6.56 -51.93 -0.34 -0.03 16 31 H 0.06 0.91 6.04 -51.93 -0.31 0.60 16 32 H 0.09 1.71 6.12 -51.93 -0.32 1.39 16 33 H 0.02 0.32 6.83 -51.93 -0.35 -0.03 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.33 4.25 8.86 -39.29 -0.35 3.90 16 41 H 0.09 1.79 7.78 -51.93 -0.40 1.38 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.04 0.60 6.69 -51.93 -0.35 0.25 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.89 6.54 -51.93 -0.34 0.55 16 46 H 0.02 0.52 6.25 -51.93 -0.32 0.19 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -28.52 355.69 -10.36 -38.87 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -9.10 Total: 3.34 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -0.73 Total: -17.84 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.87 Total: -46.88 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.52 -10.36 -38.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843595.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.038 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds