Wall clock time and date at job start Mon Mar 30 2020 07:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 N 1.46910 * 109.47113 * 183.85194 * 3 2 1 5 5 C 1.46892 * 111.00042 * 171.24998 * 4 3 2 6 6 C 1.53000 * 109.47271 * 293.95262 * 5 4 3 7 7 H 1.08997 * 109.50558 * 55.07393 * 6 5 4 8 8 C 1.53117 * 109.54001 * 175.13980 * 6 5 4 9 9 C 1.53121 * 109.16038 * 177.57386 * 8 6 5 10 10 C 1.53039 * 109.31028 * 302.40366 * 9 8 6 11 11 N 1.46848 * 109.52229 * 59.15959 * 10 9 8 12 12 C 1.46848 * 111.19848 * 298.25627 * 11 10 9 13 13 C 1.46900 * 110.99418 * 295.20320 * 4 3 2 14 14 H 1.09001 * 109.47782 * 47.70846 * 13 4 3 15 15 C 1.53003 * 109.47163 * 287.70451 * 13 4 3 16 16 C 1.53006 * 109.46973 * 167.71141 * 13 4 3 17 17 C 1.50697 * 109.46690 * 294.55322 * 16 13 4 18 18 H 1.08000 * 120.00309 * 354.96595 * 17 16 13 19 19 C 1.37877 * 120.00132 * 174.96487 * 17 16 13 20 20 N 1.31516 * 119.99388 * 5.13332 * 19 17 16 21 21 Si 1.86797 * 120.00516 * 185.12942 * 19 17 16 22 22 H 1.48497 * 109.47022 * 94.99455 * 21 19 17 23 23 H 1.48494 * 109.47615 * 214.99640 * 21 19 17 24 24 H 1.48507 * 109.47034 * 334.99785 * 21 19 17 25 25 H 1.08995 * 109.47068 * 184.94779 * 1 2 3 26 26 H 1.08994 * 109.46750 * 304.95489 * 1 2 3 27 27 H 1.08998 * 109.46827 * 64.95114 * 1 2 3 28 28 H 1.09003 * 109.47066 * 239.99960 * 2 1 3 29 29 H 1.09002 * 109.47112 * 119.99962 * 2 1 3 30 30 H 1.09000 * 109.47530 * 63.85249 * 3 2 1 31 31 H 1.08997 * 109.47154 * 303.84570 * 3 2 1 32 32 H 1.09002 * 109.47171 * 173.95161 * 5 4 3 33 33 H 1.09007 * 109.47353 * 53.95124 * 5 4 3 34 34 H 1.09006 * 109.49412 * 57.68951 * 8 6 5 35 35 H 1.09001 * 109.55919 * 297.49643 * 8 6 5 36 36 H 1.08997 * 109.50624 * 182.44376 * 9 8 6 37 37 H 1.09001 * 109.50269 * 62.36492 * 9 8 6 38 38 H 1.08999 * 109.46325 * 179.17947 * 10 9 8 39 39 H 1.09001 * 109.45911 * 299.14320 * 10 9 8 40 40 H 1.00897 * 111.00081 * 62.35215 * 11 10 9 41 41 H 1.08993 * 109.46239 * 181.75995 * 12 11 10 42 42 H 1.09006 * 109.46600 * 301.73844 * 12 11 10 43 43 H 1.09000 * 109.46778 * 60.00288 * 15 13 4 44 44 H 1.08998 * 109.47394 * 180.02562 * 15 13 4 45 45 H 1.09000 * 109.47599 * 300.00674 * 15 13 4 46 46 H 1.08993 * 109.47069 * 54.54898 * 16 13 4 47 47 H 1.08996 * 109.46989 * 174.55482 * 16 13 4 48 48 H 0.97008 * 119.99579 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5062 1.4435 -0.0930 5 6 4.0193 2.8036 -0.3042 6 6 3.5673 3.3123 -1.6745 7 1 2.4821 3.2422 -1.7490 8 6 3.9975 4.7716 -1.8466 9 6 3.5947 5.2531 -3.2432 10 6 4.2372 4.3468 -4.2958 11 7 3.7929 2.9625 -4.0886 12 6 4.2105 2.4622 -2.7726 13 6 4.1096 0.8322 1.0987 14 1 3.6077 -0.1103 1.3173 15 6 3.9573 1.7796 2.2904 16 6 5.5951 0.5714 0.8413 17 6 5.7426 -0.4636 -0.2441 18 1 4.8676 -0.9516 -0.6475 19 6 6.9946 -0.7875 -0.7223 20 7 8.0662 -0.2692 -0.1633 21 14 7.1686 -1.9626 -2.1639 22 1 7.2766 -1.1861 -3.4251 23 1 8.3898 -2.7883 -1.9849 24 1 5.9777 -2.8475 -2.2278 25 1 -0.3633 -1.0238 0.0886 26 1 -0.3632 0.5888 0.8422 27 1 -0.3633 0.4351 -0.9310 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7342 1.9361 0.9225 31 1 1.6215 1.9758 -0.8535 32 1 5.1084 2.7917 -0.2622 33 1 3.6329 3.4626 0.4735 34 1 5.0790 4.8479 -1.7329 35 1 3.5069 5.3880 -1.0933 36 1 3.9368 6.2778 -3.3876 37 1 2.5099 5.2142 -3.3426 38 1 3.9402 4.6785 -5.2907 39 1 5.3222 4.3975 -4.2051 40 1 2.7940 2.8820 -4.2056 41 1 3.8942 1.4251 -2.6613 42 1 5.2957 2.5218 -2.6890 43 1 2.8990 1.9655 2.4738 44 1 4.4054 1.3263 3.1746 45 1 4.4591 2.7222 2.0719 46 1 6.0777 1.4972 0.5284 47 1 6.0640 0.2082 1.7558 48 1 8.9471 -0.4973 -0.4995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695843595.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:27 Heat of formation + Delta-G solvation = -39.346934 kcal Electronic energy + Delta-G solvation = -22571.137976 eV Core-core repulsion = 19658.968363 eV Total energy + Delta-G solvation = -2912.169613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52612 -38.88107 -35.33654 -34.35748 -33.52760 -32.32658 -30.84359 -29.08913 -27.29810 -25.66942 -24.54398 -24.44636 -22.69268 -22.31261 -21.08663 -19.71119 -18.32363 -17.05513 -16.69512 -16.59922 -16.12855 -16.04527 -15.58403 -15.41968 -14.88232 -14.48223 -14.28342 -13.94720 -13.76564 -13.69870 -13.55417 -13.17671 -13.06741 -12.88691 -12.74271 -12.62247 -12.50340 -12.39592 -12.24758 -12.13527 -12.06327 -11.80200 -11.71553 -11.55063 -11.18603 -11.06431 -10.99467 -10.87422 -10.43157 -9.20783 -8.77381 -8.07303 -6.09475 1.40669 1.44083 1.52459 2.48881 3.11721 3.30289 3.47298 3.80060 3.99462 4.03605 4.09633 4.15006 4.25805 4.29485 4.40247 4.48942 4.55154 4.56623 4.63047 4.64428 4.67501 4.73956 4.80952 4.88005 4.91881 4.99945 5.05330 5.07806 5.10372 5.17228 5.22074 5.22884 5.25938 5.29993 5.37672 5.41594 5.51832 5.54735 5.59673 5.73539 5.93757 6.16668 6.37681 6.53680 6.60758 6.63140 7.03357 7.55423 9.04907 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.007960 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.138826 B = 3516.878281 C = 4610.585282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.056 3.944 4 N -0.523 5.523 5 C 0.072 3.928 6 C -0.103 4.103 7 H 0.080 0.920 8 C -0.114 4.114 9 C -0.144 4.144 10 C 0.054 3.946 11 N -0.696 5.696 12 C 0.084 3.916 13 C 0.093 3.907 14 H 0.068 0.932 15 C -0.174 4.174 16 C 0.039 3.961 17 C -0.485 4.485 18 H 0.056 0.944 19 C -0.001 4.001 20 N -0.940 5.940 21 Si 0.946 3.054 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.265 1.265 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.346 0.654 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.048 0.952 46 H -0.005 1.005 47 H -0.015 1.015 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.143 9.859 -3.046 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C -0.071 4.071 4 N -0.246 5.246 5 C -0.057 4.057 6 C -0.123 4.123 7 H 0.098 0.902 8 C -0.153 4.153 9 C -0.183 4.183 10 C -0.076 4.076 11 N -0.325 5.325 12 C -0.046 4.046 13 C -0.015 4.015 14 H 0.086 0.914 15 C -0.232 4.232 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.074 0.926 19 C -0.197 4.197 20 N -0.582 5.582 21 Si 0.773 3.227 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.190 1.190 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.072 0.928 40 H 0.164 0.836 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.014 0.986 47 H 0.003 0.997 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.290 9.270 -3.827 17.458 hybrid contribution 0.246 0.176 0.869 0.920 sum -14.043 9.446 -2.958 17.181 Atomic orbital electron populations 1.21666 0.93927 1.02021 1.02150 1.21502 0.96450 0.96344 1.01451 1.22207 0.87529 0.97162 1.00231 1.62006 1.05300 1.18896 1.38406 1.21950 0.99133 0.88763 0.95845 1.21757 1.00441 0.95250 0.94880 0.90219 1.21593 1.00574 0.95007 0.98077 1.22161 1.01275 1.00375 0.94509 1.22071 0.99578 0.86868 0.99047 1.60621 1.19957 1.21421 1.30462 1.21672 0.98181 0.98491 0.86222 1.21632 0.96066 0.96317 0.87521 0.91401 1.22380 1.01332 1.00225 0.99302 1.19024 0.91066 0.95213 0.94530 1.21388 0.91723 1.20491 1.18756 0.92580 1.25729 0.96060 0.98441 0.99424 1.70100 0.98020 1.47262 1.42839 0.85707 0.77432 0.79223 0.80316 1.20822 1.21449 1.18958 0.92318 0.92238 0.92074 0.92979 0.93270 0.94953 0.90287 0.93578 0.94800 0.93537 0.91066 0.90219 0.90889 0.89224 0.92829 0.83601 0.91465 0.94712 0.91703 0.92787 0.93276 0.98641 0.99659 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.91 71.98 0.71 -2.15 16 2 C -0.12 -3.32 5.76 30.59 0.18 -3.14 16 3 C 0.06 1.58 4.71 86.30 0.41 1.99 16 4 N -0.52 -18.67 3.65 -870.96 -3.18 -21.85 16 5 C 0.07 2.42 3.23 86.30 0.28 2.70 16 6 C -0.10 -2.91 2.26 -10.74 -0.02 -2.93 16 7 H 0.08 2.01 6.19 -2.39 -0.01 2.00 16 8 C -0.11 -2.78 5.29 30.67 0.16 -2.62 16 9 C -0.14 -2.82 6.08 30.65 0.19 -2.64 16 10 C 0.05 1.25 6.56 86.33 0.57 1.81 16 11 N -0.70 -19.32 6.87 -513.99 -3.53 -22.85 16 12 C 0.08 2.85 5.72 86.33 0.49 3.34 16 13 C 0.09 3.73 2.12 44.92 0.10 3.83 16 14 H 0.07 2.78 6.03 -2.39 -0.01 2.77 16 15 C -0.17 -5.84 8.42 71.98 0.61 -5.23 16 16 C 0.04 2.02 4.43 29.85 0.13 2.16 16 17 C -0.49 -27.50 8.84 25.60 0.23 -27.27 16 18 H 0.06 3.15 7.75 -2.91 -0.02 3.13 16 19 C 0.00 -0.04 5.45 84.65 0.46 0.42 16 20 N -0.94 -58.40 13.29 21.45 0.29 -58.12 16 21 Si 0.95 46.64 29.54 68.60 2.03 48.66 16 22 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.48 6.46 -2.39 -0.02 1.47 16 30 H 0.03 0.86 6.56 -2.39 -0.02 0.84 16 31 H 0.08 2.00 6.04 -2.39 -0.01 1.99 16 32 H 0.05 1.93 6.12 -2.39 -0.01 1.92 16 33 H 0.03 1.05 6.83 -2.38 -0.02 1.03 16 34 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.35 8.07 8.86 -89.70 -0.79 7.28 16 41 H 0.07 2.62 7.78 -2.39 -0.02 2.60 16 42 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.06 1.85 6.69 -2.39 -0.02 1.83 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.66 6.54 -2.39 -0.02 1.65 16 46 H 0.00 -0.27 6.25 -2.39 -0.01 -0.28 16 47 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 48 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -64.02 355.69 0.20 -63.82 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.11 Total: 20.07 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 4.48 Total: -29.74 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -6.42 Total: -102.81 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -64.02 0.20 -63.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843595.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.474 kcal (2) G-P(sol) polarization free energy of solvation -64.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds