Wall clock time and date at job start Mon Mar 30 2020 08:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47404 * 2 1 4 4 C 1.52998 * 109.47342 * 119.99988 * 2 1 3 5 5 C 1.50694 * 109.47411 * 185.00121 * 4 2 1 6 6 H 1.07998 * 119.99898 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00196 * 179.72075 * 5 4 2 8 8 N 1.31513 * 120.00124 * 180.27443 * 7 5 4 9 9 Si 1.86804 * 119.99895 * 0.28100 * 7 5 4 10 10 H 1.48496 * 109.46953 * 89.99444 * 9 7 5 11 11 H 1.48496 * 109.46928 * 209.99711 * 9 7 5 12 12 H 1.48506 * 109.46827 * 329.99497 * 9 7 5 13 13 N 1.46898 * 109.47256 * 239.99989 * 2 1 3 14 14 C 1.46842 * 111.00183 * 303.30247 * 13 2 1 15 15 C 1.53036 * 109.52484 * 185.83678 * 14 13 2 16 16 C 1.53120 * 109.28251 * 300.82328 * 15 14 13 17 17 C 1.53120 * 109.15958 * 57.65291 * 16 15 14 18 18 H 1.08994 * 109.50406 * 62.32469 * 17 16 15 19 19 C 1.52994 * 109.50519 * 182.40716 * 17 16 15 20 20 C 1.46851 * 111.00084 * 67.51580 * 13 2 1 21 21 H 1.08997 * 109.46098 * 294.17513 * 20 13 2 22 22 C 1.53002 * 109.46157 * 54.14368 * 20 13 2 23 23 C 1.52994 * 109.47127 * 58.12222 * 22 20 13 24 24 C 1.53007 * 109.47111 * 185.14519 * 23 22 20 25 25 N 1.46900 * 109.47155 * 179.97438 * 24 23 22 26 26 H 1.09004 * 109.46932 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47264 * 299.99575 * 1 2 3 28 28 H 1.09003 * 109.47382 * 60.00078 * 1 2 3 29 29 H 1.08998 * 109.47460 * 64.99798 * 4 2 1 30 30 H 1.09008 * 109.47079 * 305.00440 * 4 2 1 31 31 H 0.96995 * 119.99850 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46318 * 305.85736 * 14 13 2 33 33 H 1.09005 * 109.46242 * 65.82643 * 14 13 2 34 34 H 1.09000 * 109.50220 * 60.76315 * 15 14 13 35 35 H 1.09003 * 109.50703 * 180.88022 * 15 14 13 36 36 H 1.08995 * 109.52426 * 177.55846 * 16 15 14 37 37 H 1.08996 * 109.52040 * 297.75123 * 16 15 14 38 38 H 1.09001 * 109.47018 * 59.99942 * 19 17 16 39 39 H 1.08999 * 109.47538 * 180.02562 * 19 17 16 40 40 H 1.09000 * 109.47005 * 300.00068 * 19 17 16 41 41 H 1.09000 * 109.46910 * 178.12354 * 22 20 13 42 42 H 1.09003 * 109.47107 * 298.12034 * 22 20 13 43 43 H 1.08996 * 109.47358 * 305.14634 * 23 22 20 44 44 H 1.08996 * 109.47114 * 65.14704 * 23 22 20 45 45 H 1.08996 * 109.47103 * 300.00270 * 24 23 22 46 46 H 1.09002 * 109.46580 * 60.00131 * 24 23 22 47 47 H 1.00896 * 110.99656 * 56.04801 * 25 24 23 48 48 H 1.00900 * 110.99583 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2299 -1.1881 2.3611 8 7 5.5401 -1.0906 2.4193 9 14 3.3010 -2.1033 3.6987 10 1 3.1758 -3.5347 3.3236 11 1 4.0412 -1.9905 4.9811 12 1 1.9476 -1.5122 3.8546 13 7 2.0197 -0.6925 -1.1994 14 6 1.4855 -2.0583 -1.2735 15 6 2.1277 -2.7955 -2.4508 16 6 1.8258 -2.0383 -3.7470 17 6 2.3496 -0.6047 -3.6252 18 1 3.4317 -0.6223 -3.4962 19 6 1.9989 0.1768 -4.8929 20 6 1.7008 0.0691 -2.4139 21 1 0.6198 0.0988 -2.5505 22 6 2.2365 1.4956 -2.2763 23 6 3.7470 1.4523 -2.0370 24 6 4.2622 2.8685 -1.7721 25 7 5.7124 2.8268 -1.5417 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.7517 -1.7715 1.2056 30 1 1.6053 -0.2617 2.1370 31 1 6.0241 -1.4942 3.1567 32 1 1.7106 -2.5871 -0.3474 33 1 0.4054 -2.0186 -1.4156 34 1 3.2064 -2.8477 -2.3027 35 1 1.7195 -3.8041 -2.5151 36 1 2.3176 -2.5361 -4.5826 37 1 0.7491 -2.0196 -3.9155 38 1 0.9165 0.1953 -5.0206 39 1 2.3724 1.1971 -4.8059 40 1 2.4583 -0.3055 -5.7557 41 1 2.0292 2.0513 -3.1909 42 1 1.7491 1.9872 -1.4343 43 1 3.9603 0.8208 -1.1747 44 1 4.2428 1.0442 -2.9177 45 1 4.0489 3.5000 -2.6345 46 1 3.7663 3.2766 -0.8913 47 1 6.1894 2.3928 -2.3177 48 1 6.0769 3.7507 -1.3638 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695869384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:40:20 Heat of formation + Delta-G solvation = -16.410766 kcal Electronic energy + Delta-G solvation = -22980.006774 eV Core-core repulsion = 20068.831748 eV Total energy + Delta-G solvation = -2911.175026 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.72666 -35.58839 -35.25934 -32.81858 -32.39389 -30.60226 -29.15561 -27.67421 -26.36984 -24.98352 -23.35146 -22.05909 -21.44427 -20.62161 -19.13483 -18.11631 -16.51050 -15.83061 -15.41011 -15.10923 -14.64854 -14.36081 -14.06280 -13.88931 -13.79435 -13.18504 -12.97697 -12.70003 -12.50043 -12.20150 -12.02095 -11.94164 -11.69824 -11.59077 -11.44473 -11.14501 -11.08862 -10.79152 -10.71083 -10.46134 -10.32155 -10.19497 -10.01834 -9.76332 -9.59626 -9.39806 -9.37900 -8.81650 -8.31600 -8.24828 -7.35948 -5.79246 -3.73025 3.40928 3.48951 3.51169 4.48996 4.62532 4.88089 5.01683 5.03986 5.19666 5.41251 5.48569 5.52971 5.58381 5.61856 5.71238 5.73264 5.77057 5.80436 5.87279 5.92857 5.94735 5.97141 6.00247 6.08604 6.14867 6.17605 6.24631 6.26860 6.34245 6.44302 6.50104 6.57941 6.58655 6.72047 6.75451 6.83939 6.93097 7.18110 7.28093 7.44550 7.55711 7.79067 7.93494 7.98036 8.08901 8.83927 9.37966 9.83346 11.34014 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.007816 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.771821 B = 3581.709760 C = 4536.108216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.092 3.908 3 H 0.082 0.918 4 C -0.008 4.008 5 C -0.486 4.486 6 H 0.086 0.914 7 C 0.063 3.937 8 N -0.903 5.903 9 Si 0.866 3.134 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.270 1.270 13 N -0.498 5.498 14 C 0.056 3.944 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.086 4.086 18 H 0.083 0.917 19 C -0.146 4.146 20 C 0.092 3.908 21 H 0.029 0.971 22 C -0.111 4.111 23 C -0.118 4.118 24 C 0.066 3.934 25 N -0.843 5.843 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.010 0.990 30 H 0.014 0.986 31 H 0.257 0.743 32 H 0.084 0.916 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.110 0.890 44 H 0.050 0.950 45 H 0.009 0.991 46 H 0.067 0.933 47 H 0.336 0.664 48 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 3.536 -13.230 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.016 4.016 3 H 0.100 0.900 4 C -0.045 4.045 5 C -0.525 4.525 6 H 0.104 0.896 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.695 3.305 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.195 1.195 13 N -0.222 5.222 14 C -0.072 4.072 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.104 4.104 18 H 0.101 0.899 19 C -0.203 4.203 20 C -0.017 4.017 21 H 0.047 0.953 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.065 4.065 25 N -0.372 5.372 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.038 0.962 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.128 0.872 44 H 0.069 0.931 45 H 0.027 0.973 46 H 0.085 0.915 47 H 0.148 0.852 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.448 2.999 -12.446 14.811 hybrid contribution -1.326 0.081 -0.087 1.331 sum -8.774 3.080 -12.533 15.606 Atomic orbital electron populations 1.22567 1.00191 1.01199 1.00736 1.21759 0.89528 0.99129 0.91145 0.89975 1.19715 0.98229 0.94857 0.91687 1.21105 0.89185 1.33711 1.08466 0.89562 1.24992 0.94588 0.96417 0.97633 1.69925 1.06299 1.46170 1.31976 0.87005 0.80478 0.80658 0.82377 1.20781 1.21795 1.19477 1.61977 1.58712 1.00920 1.00552 1.22067 0.95123 0.90763 0.99229 1.21578 1.02320 0.97470 0.94087 1.21614 0.99949 0.95710 0.97685 1.21203 1.01622 0.94114 0.93506 0.89871 1.21864 1.00859 1.00289 0.97311 1.21547 0.96066 0.93261 0.90824 0.95325 1.21649 0.97084 0.95562 1.00622 1.21636 0.93662 0.96218 1.04035 1.21812 0.88587 0.97578 0.98479 1.58559 1.04242 1.25974 1.48379 0.93049 0.92768 0.93876 0.97143 0.96771 0.93293 0.89814 0.96208 0.90745 0.92547 0.92591 0.93054 0.93331 0.92475 0.93099 0.92721 0.91944 0.87154 0.93085 0.97327 0.91495 0.85210 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.48 37.16 0.32 -2.77 16 2 C 0.09 1.78 1.70 -67.72 -0.12 1.67 16 3 H 0.08 1.65 5.68 -51.93 -0.29 1.36 16 4 C -0.01 -0.18 3.39 -27.89 -0.09 -0.27 16 5 C -0.49 -13.59 9.39 -34.44 -0.32 -13.91 16 6 H 0.09 2.62 6.26 -52.49 -0.33 2.29 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 9 Si 0.87 22.09 27.47 -169.99 -4.67 17.42 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 13 N -0.50 -8.97 3.28 -218.76 -0.72 -9.69 16 14 C 0.06 0.96 4.60 -3.84 -0.02 0.95 16 15 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 16 C -0.11 -1.47 5.29 -26.61 -0.14 -1.61 16 17 C -0.09 -1.17 2.11 -90.54 -0.19 -1.36 16 18 H 0.08 1.27 6.56 -51.93 -0.34 0.93 16 19 C -0.15 -1.63 8.86 37.15 0.33 -1.30 16 20 C 0.09 1.38 1.27 -67.72 -0.09 1.30 16 21 H 0.03 0.44 6.80 -51.93 -0.35 0.08 16 22 C -0.11 -1.61 4.14 -26.73 -0.11 -1.72 16 23 C -0.12 -1.92 4.79 -26.73 -0.13 -2.04 16 24 C 0.07 0.99 6.79 -3.82 -0.03 0.97 16 25 N -0.84 -12.90 9.62 -10.37 -0.10 -13.00 16 26 H 0.05 0.83 6.48 -51.93 -0.34 0.50 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.64 6.73 -51.93 -0.35 0.29 16 29 H 0.01 0.25 5.56 -51.93 -0.29 -0.04 16 30 H 0.01 0.34 7.19 -51.92 -0.37 -0.03 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.08 1.63 6.02 -51.93 -0.31 1.32 16 33 H 0.02 0.32 6.59 -51.93 -0.34 -0.02 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.62 6.42 -51.93 -0.33 0.29 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.69 6.36 -51.93 -0.33 0.36 16 42 H 0.06 0.95 6.28 -51.93 -0.33 0.62 16 43 H 0.11 2.34 5.42 -51.93 -0.28 2.06 16 44 H 0.05 0.79 6.73 -51.93 -0.35 0.44 16 45 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.34 4.62 8.99 -39.29 -0.35 4.27 16 48 H 0.33 4.30 9.08 -39.29 -0.36 3.95 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -30.33 342.21 -9.03 -39.36 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.62 Total: 8.54 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -0.85 Total: -20.27 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.04 Total: -50.21 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.33 -9.03 -39.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695869384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.950 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds