Wall clock time and date at job start Mon Mar 30 2020 08:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47404 * 2 1 4 4 C 1.52998 * 109.47342 * 119.99988 * 2 1 3 5 5 C 1.50694 * 109.47411 * 185.00121 * 4 2 1 6 6 H 1.07998 * 119.99898 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00196 * 179.72075 * 5 4 2 8 8 N 1.31513 * 120.00124 * 180.27443 * 7 5 4 9 9 Si 1.86804 * 119.99895 * 0.28100 * 7 5 4 10 10 H 1.48496 * 109.46953 * 89.99444 * 9 7 5 11 11 H 1.48496 * 109.46928 * 209.99711 * 9 7 5 12 12 H 1.48506 * 109.46827 * 329.99497 * 9 7 5 13 13 N 1.46898 * 109.47256 * 239.99989 * 2 1 3 14 14 C 1.46842 * 111.00183 * 303.30247 * 13 2 1 15 15 C 1.53036 * 109.52484 * 185.83678 * 14 13 2 16 16 C 1.53120 * 109.28251 * 300.82328 * 15 14 13 17 17 C 1.53120 * 109.15958 * 57.65291 * 16 15 14 18 18 H 1.08994 * 109.50406 * 62.32469 * 17 16 15 19 19 C 1.52994 * 109.50519 * 182.40716 * 17 16 15 20 20 C 1.46851 * 111.00084 * 67.51580 * 13 2 1 21 21 H 1.08997 * 109.46098 * 294.17513 * 20 13 2 22 22 C 1.53002 * 109.46157 * 54.14368 * 20 13 2 23 23 C 1.52994 * 109.47127 * 58.12222 * 22 20 13 24 24 C 1.53007 * 109.47111 * 185.14519 * 23 22 20 25 25 N 1.46900 * 109.47155 * 179.97438 * 24 23 22 26 26 H 1.09004 * 109.46932 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47264 * 299.99575 * 1 2 3 28 28 H 1.09003 * 109.47382 * 60.00078 * 1 2 3 29 29 H 1.08998 * 109.47460 * 64.99798 * 4 2 1 30 30 H 1.09008 * 109.47079 * 305.00440 * 4 2 1 31 31 H 0.96995 * 119.99850 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46318 * 305.85736 * 14 13 2 33 33 H 1.09005 * 109.46242 * 65.82643 * 14 13 2 34 34 H 1.09000 * 109.50220 * 60.76315 * 15 14 13 35 35 H 1.09003 * 109.50703 * 180.88022 * 15 14 13 36 36 H 1.08995 * 109.52426 * 177.55846 * 16 15 14 37 37 H 1.08996 * 109.52040 * 297.75123 * 16 15 14 38 38 H 1.09001 * 109.47018 * 59.99942 * 19 17 16 39 39 H 1.08999 * 109.47538 * 180.02562 * 19 17 16 40 40 H 1.09000 * 109.47005 * 300.00068 * 19 17 16 41 41 H 1.09000 * 109.46910 * 178.12354 * 22 20 13 42 42 H 1.09003 * 109.47107 * 298.12034 * 22 20 13 43 43 H 1.08996 * 109.47358 * 305.14634 * 23 22 20 44 44 H 1.08996 * 109.47114 * 65.14704 * 23 22 20 45 45 H 1.08996 * 109.47103 * 300.00270 * 24 23 22 46 46 H 1.09002 * 109.46580 * 60.00131 * 24 23 22 47 47 H 1.00896 * 110.99656 * 56.04801 * 25 24 23 48 48 H 1.00900 * 110.99583 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0854 0.5396 7 6 4.2299 -1.1881 2.3611 8 7 5.5401 -1.0906 2.4193 9 14 3.3010 -2.1033 3.6987 10 1 3.1758 -3.5347 3.3236 11 1 4.0412 -1.9905 4.9811 12 1 1.9476 -1.5122 3.8546 13 7 2.0197 -0.6925 -1.1994 14 6 1.4855 -2.0583 -1.2735 15 6 2.1277 -2.7955 -2.4508 16 6 1.8258 -2.0383 -3.7470 17 6 2.3496 -0.6047 -3.6252 18 1 3.4317 -0.6223 -3.4962 19 6 1.9989 0.1768 -4.8929 20 6 1.7008 0.0691 -2.4139 21 1 0.6198 0.0988 -2.5505 22 6 2.2365 1.4956 -2.2763 23 6 3.7470 1.4523 -2.0370 24 6 4.2622 2.8685 -1.7721 25 7 5.7124 2.8268 -1.5417 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.7517 -1.7715 1.2056 30 1 1.6053 -0.2617 2.1370 31 1 6.0241 -1.4942 3.1567 32 1 1.7106 -2.5871 -0.3474 33 1 0.4054 -2.0186 -1.4156 34 1 3.2064 -2.8477 -2.3027 35 1 1.7195 -3.8041 -2.5151 36 1 2.3176 -2.5361 -4.5826 37 1 0.7491 -2.0196 -3.9155 38 1 0.9165 0.1953 -5.0206 39 1 2.3724 1.1971 -4.8059 40 1 2.4583 -0.3055 -5.7557 41 1 2.0292 2.0513 -3.1909 42 1 1.7491 1.9872 -1.4343 43 1 3.9603 0.8208 -1.1747 44 1 4.2428 1.0442 -2.9177 45 1 4.0489 3.5000 -2.6345 46 1 3.7663 3.2766 -0.8913 47 1 6.1894 2.3928 -2.3177 48 1 6.0769 3.7507 -1.3638 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695869384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:40:20 Heat of formation + Delta-G solvation = -36.751659 kcal Electronic energy + Delta-G solvation = -22980.888821 eV Core-core repulsion = 20068.831748 eV Total energy + Delta-G solvation = -2912.057073 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01504 -36.96822 -36.53943 -34.48983 -34.03503 -32.05266 -30.58633 -29.33832 -27.50291 -26.24790 -24.91131 -23.70337 -22.71011 -21.84332 -20.54077 -19.45579 -18.69329 -17.18015 -16.74701 -16.49012 -16.04860 -15.87686 -15.52962 -15.14958 -15.02816 -14.73085 -14.29908 -14.15736 -13.98406 -13.78564 -13.44111 -13.23734 -13.02384 -12.93148 -12.73953 -12.64416 -12.41766 -12.25468 -12.02707 -11.86647 -11.80804 -11.59884 -11.56911 -11.31601 -11.15500 -11.00144 -10.72692 -10.69076 -10.55272 -9.44904 -8.70117 -8.07637 -6.05063 1.36381 1.38146 1.48233 2.45853 3.13821 3.31043 3.71829 3.89636 3.93719 4.03821 4.18935 4.23356 4.35835 4.38217 4.47674 4.49479 4.52867 4.58347 4.68653 4.72275 4.77906 4.81169 4.87976 4.91188 4.97891 5.01171 5.03804 5.07917 5.15042 5.17312 5.22767 5.24179 5.32437 5.38414 5.40441 5.51246 5.53402 5.67587 5.68957 5.80017 5.86652 6.38322 6.51467 6.62459 6.69886 6.72275 7.08035 7.54328 9.08906 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.007816 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.771821 B = 3581.709760 C = 4536.108216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 H 0.068 0.932 4 C -0.005 4.005 5 C -0.477 4.477 6 H 0.049 0.951 7 C -0.002 4.002 8 N -0.954 5.954 9 Si 0.933 3.067 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.251 1.251 13 N -0.521 5.521 14 C 0.056 3.944 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.084 4.084 18 H 0.058 0.942 19 C -0.138 4.138 20 C 0.093 3.907 21 H 0.041 0.959 22 C -0.105 4.105 23 C -0.107 4.107 24 C 0.070 3.930 25 N -0.867 5.867 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.012 0.988 30 H 0.012 0.988 31 H 0.256 0.744 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.040 0.960 46 H 0.051 0.949 47 H 0.343 0.657 48 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.645 3.693 -14.965 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.010 4.010 3 H 0.087 0.913 4 C -0.042 4.042 5 C -0.516 4.516 6 H 0.067 0.933 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.759 3.241 10 H -0.201 1.201 11 H -0.218 1.218 12 H -0.175 1.175 13 N -0.245 5.245 14 C -0.071 4.071 15 C -0.152 4.152 16 C -0.143 4.143 17 C -0.103 4.103 18 H 0.076 0.924 19 C -0.196 4.196 20 C -0.015 4.015 21 H 0.059 0.941 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.061 4.061 25 N -0.398 5.398 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.156 0.844 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.188 3.166 -14.196 17.758 hybrid contribution -0.396 0.064 0.398 0.565 sum -10.584 3.229 -13.798 17.687 Atomic orbital electron populations 1.22424 0.97308 1.01821 1.02063 1.21493 0.91668 0.97750 0.90106 0.91350 1.19655 0.95050 0.95516 0.94019 1.21345 0.91610 1.31778 1.06836 0.93324 1.25850 0.95361 0.97890 1.00505 1.70101 1.08255 1.48232 1.33155 0.85920 0.79762 0.79441 0.78992 1.20096 1.21809 1.17523 1.61880 1.59731 1.01601 1.01313 1.22033 0.96246 0.90249 0.98621 1.21551 1.00325 0.98695 0.94652 1.21583 1.01026 0.94997 0.96710 1.21179 0.99966 0.94984 0.94188 0.92392 1.21801 1.01776 1.00033 0.95981 1.21633 0.96783 0.93140 0.89929 0.94131 1.21624 0.95292 0.95746 1.01626 1.21434 0.95438 0.95961 1.01624 1.21745 0.88261 0.97101 0.98981 1.58534 1.04781 1.27227 1.49244 0.92684 0.92264 0.91758 0.96938 0.97004 0.93478 0.92986 0.94447 0.93679 0.90724 0.91066 0.91446 0.92064 0.92128 0.91944 0.89767 0.92775 0.92691 0.92716 0.94220 0.93034 0.84362 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.42 8.48 71.98 0.61 -4.81 16 2 C 0.10 3.78 1.70 44.91 0.08 3.85 16 3 H 0.07 2.80 5.68 -2.39 -0.01 2.79 16 4 C 0.00 -0.23 3.39 29.85 0.10 -0.13 16 5 C -0.48 -27.80 9.39 25.60 0.24 -27.56 16 6 H 0.05 3.16 6.26 -2.91 -0.02 3.15 16 7 C 0.00 -0.09 5.47 84.66 0.46 0.37 16 8 N -0.95 -62.43 13.96 21.45 0.30 -62.13 16 9 Si 0.93 46.45 27.47 68.60 1.88 48.33 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 12 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 13 N -0.52 -18.77 3.28 -846.03 -2.77 -21.54 16 14 C 0.06 1.90 4.60 86.33 0.40 2.30 16 15 C -0.11 -3.36 6.09 30.65 0.19 -3.17 16 16 C -0.11 -2.50 5.29 30.67 0.16 -2.34 16 17 C -0.08 -2.13 2.11 -10.74 -0.02 -2.15 16 18 H 0.06 1.76 6.56 -2.39 -0.02 1.75 16 19 C -0.14 -2.59 8.86 71.98 0.64 -1.95 16 20 C 0.09 2.65 1.27 44.94 0.06 2.71 16 21 H 0.04 1.08 6.80 -2.39 -0.02 1.07 16 22 C -0.10 -2.90 4.14 30.59 0.13 -2.77 16 23 C -0.11 -3.53 4.79 30.59 0.15 -3.38 16 24 C 0.07 2.09 6.79 86.31 0.59 2.67 16 25 N -0.87 -27.08 9.62 -186.71 -1.80 -28.88 16 26 H 0.05 1.64 6.48 -2.39 -0.02 1.62 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.70 6.73 -2.39 -0.02 1.68 16 29 H 0.01 0.59 5.56 -2.39 -0.01 0.58 16 30 H 0.01 0.56 7.19 -2.38 -0.02 0.55 16 31 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 32 H 0.05 2.05 6.02 -2.39 -0.01 2.04 16 33 H 0.04 1.12 6.59 -2.38 -0.02 1.11 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.09 6.42 -2.39 -0.02 1.08 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.85 6.36 -2.39 -0.02 1.83 16 42 H 0.05 1.59 6.28 -2.39 -0.01 1.58 16 43 H 0.05 2.48 5.42 -2.39 -0.01 2.47 16 44 H 0.05 1.72 6.73 -2.39 -0.02 1.71 16 45 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.34 9.61 8.99 -89.70 -0.81 8.80 16 48 H 0.35 8.99 9.08 -89.69 -0.81 8.17 16 Total: -1.00 -68.88 342.21 0.65 -68.23 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: -0.73 Total: 32.34 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 3.77 Total: -36.35 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -4.27 Total: -112.55 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.88 Total: 48.33 kcal Total: -68.88 0.65 -68.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695869384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.480 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds