Wall clock time and date at job start Mon Mar 30 2020 07:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47170 * 2 1 4 4 N 1.46897 * 109.47044 * 180.02562 * 3 2 1 5 5 C 1.46900 * 110.99671 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46982 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.49948 * 54.92183 * 6 5 4 8 8 C 1.53114 * 109.50293 * 294.80280 * 6 5 4 9 9 C 1.53122 * 109.16032 * 182.40169 * 8 6 5 10 10 C 1.53041 * 109.27563 * 57.65784 * 9 8 6 11 11 N 1.46847 * 109.52326 * 300.81956 * 10 9 8 12 12 C 1.46894 * 110.99888 * 185.83852 * 11 10 9 13 13 H 1.09004 * 109.47107 * 186.73117 * 12 11 10 14 14 C 1.52992 * 109.47303 * 306.73758 * 12 11 10 15 15 C 1.52997 * 109.47138 * 66.73985 * 12 11 10 16 16 C 1.50702 * 109.47625 * 63.86658 * 15 12 11 17 17 H 1.08001 * 119.99348 * 0.02562 * 16 15 12 18 18 C 1.37873 * 120.00436 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99914 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46924 * 60.00577 * 20 18 16 22 22 H 1.48504 * 109.46621 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47032 * 300.00058 * 20 18 16 24 24 C 1.46845 * 111.19600 * 61.74060 * 11 10 9 25 25 H 1.08992 * 109.47430 * 60.00040 * 1 2 3 26 26 H 1.09004 * 109.46869 * 299.99652 * 1 2 3 27 27 H 1.09001 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47527 * 119.99994 * 2 1 3 29 29 H 1.09002 * 109.47184 * 239.99914 * 2 1 3 30 30 H 1.09002 * 109.46890 * 300.00384 * 3 2 1 31 31 H 1.08993 * 109.47001 * 59.99939 * 3 2 1 32 32 H 1.00894 * 111.00345 * 303.95301 * 4 3 2 33 33 H 1.08997 * 109.47590 * 299.99686 * 5 4 3 34 34 H 1.08995 * 109.46966 * 60.00148 * 5 4 3 35 35 H 1.08995 * 109.52487 * 302.31270 * 8 6 5 36 36 H 1.09005 * 109.52229 * 62.50366 * 8 6 5 37 37 H 1.09002 * 109.50588 * 297.71746 * 9 8 6 38 38 H 1.09005 * 109.53562 * 177.61329 * 9 8 6 39 39 H 1.08998 * 109.46033 * 180.80467 * 10 9 8 40 40 H 1.09002 * 109.45579 * 60.82912 * 10 9 8 41 41 H 1.09003 * 109.47393 * 180.02562 * 14 12 11 42 42 H 1.08999 * 109.47471 * 299.99741 * 14 12 11 43 43 H 1.08994 * 109.47645 * 60.00179 * 14 12 11 44 44 H 1.09001 * 109.47783 * 183.87274 * 15 12 11 45 45 H 1.09008 * 109.47321 * 303.86763 * 15 12 11 46 46 H 0.96991 * 120.00451 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.45753 * 178.24138 * 24 11 10 48 48 H 1.08994 * 109.45477 * 58.27521 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0353 2.8140 -0.0013 6 6 5.5649 2.7731 -0.0012 7 1 5.9128 2.1728 -0.8418 8 6 6.0597 2.1549 1.3092 9 6 7.5907 2.1727 1.3267 10 6 8.0811 3.6131 1.1618 11 7 7.5818 4.1593 -0.1065 12 6 8.1454 5.4911 -0.3643 13 1 7.6702 5.9225 -1.2453 14 6 7.8937 6.3942 0.8447 15 6 9.6514 5.3696 -0.6053 16 6 9.8970 4.5584 -1.8515 17 1 9.0622 4.1689 -2.4153 18 6 11.1870 4.3145 -2.2722 19 7 12.2035 4.7892 -1.5859 20 14 11.4912 3.3096 -3.8173 21 1 10.8565 3.9830 -4.9787 22 1 12.9530 3.1916 -4.0511 23 1 10.9062 1.9550 -3.6499 24 6 6.1139 4.1960 -0.1276 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.8709 0.9163 0.7805 33 1 3.6856 3.3371 -0.8912 34 1 3.6862 3.3375 0.8887 35 1 5.6790 2.7328 2.1513 36 1 5.7067 1.1262 1.3828 37 1 7.9712 1.5628 0.5073 38 1 7.9491 1.7727 2.2752 39 1 9.1710 3.6276 1.1595 40 1 7.7115 4.2193 1.9889 41 1 8.3116 7.3826 0.6533 42 1 6.8208 6.4809 1.0165 43 1 8.3690 5.9629 1.7257 44 1 10.0812 6.3637 -0.7284 45 1 10.1172 4.8755 0.2474 46 1 13.1110 4.6173 -1.8816 47 1 5.7751 4.6340 -1.0664 48 1 5.7539 4.7996 0.7055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695904127.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:37 Heat of formation + Delta-G solvation = -25.534863 kcal Electronic energy + Delta-G solvation = -21421.483127 eV Core-core repulsion = 18509.912450 eV Total energy + Delta-G solvation = -2911.570676 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.21103 -37.08147 -34.99535 -33.05819 -32.25395 -30.67329 -29.54586 -27.25189 -26.24087 -24.44480 -23.47301 -22.47767 -21.82532 -21.38053 -19.43795 -18.53512 -16.29425 -16.09666 -15.63147 -15.15357 -14.92118 -14.41664 -14.23810 -14.03664 -13.84376 -13.42702 -13.31268 -13.05378 -12.71089 -12.34326 -12.10074 -12.03121 -11.76070 -11.68791 -11.48395 -11.38861 -11.15596 -11.00662 -10.93399 -10.75479 -10.53569 -10.42855 -10.29896 -10.09302 -9.90004 -9.71309 -9.10266 -8.91984 -8.52633 -8.20602 -7.37680 -5.83962 -3.81337 3.45023 3.48188 3.52624 3.98278 4.59159 4.62418 4.70666 4.80993 4.96354 5.08046 5.12424 5.17866 5.29366 5.43544 5.47867 5.52327 5.53744 5.60297 5.70780 5.74574 5.75937 5.80243 5.86375 5.91601 5.93150 5.93604 6.01118 6.03896 6.13026 6.13398 6.27476 6.37463 6.51933 6.54395 6.66201 6.75351 6.80831 6.96062 7.04675 7.27254 7.60635 7.75083 7.99675 8.09817 8.18110 8.63901 9.24528 9.80127 11.28114 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.003926 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.956970 B = 7129.833514 C = 7782.315616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.058 3.942 4 N -0.690 5.690 5 C 0.067 3.933 6 C -0.083 4.083 7 H 0.089 0.911 8 C -0.112 4.112 9 C -0.115 4.115 10 C 0.057 3.943 11 N -0.508 5.508 12 C 0.087 3.913 13 H 0.068 0.932 14 C -0.183 4.183 15 C 0.031 3.969 16 C -0.488 4.488 17 H 0.060 0.940 18 C 0.050 3.950 19 N -0.906 5.906 20 Si 0.889 3.111 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.062 3.938 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.340 0.660 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.021 0.979 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.018 0.982 46 H 0.257 0.743 47 H 0.067 0.933 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.205 -5.690 7.012 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.072 4.072 4 N -0.322 5.322 5 C -0.063 4.063 6 C -0.102 4.102 7 H 0.108 0.892 8 C -0.150 4.150 9 C -0.153 4.153 10 C -0.071 4.071 11 N -0.231 5.231 12 C -0.021 4.021 13 H 0.086 0.914 14 C -0.242 4.242 15 C -0.006 4.006 16 C -0.526 4.526 17 H 0.078 0.922 18 C -0.149 4.149 19 N -0.547 5.547 20 Si 0.718 3.282 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.067 4.067 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.158 0.842 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -18.808 -6.061 5.942 20.634 hybrid contribution -0.199 0.324 0.771 0.860 sum -19.006 -5.737 6.713 20.958 Atomic orbital electron populations 1.21729 0.95686 1.01706 1.01755 1.21512 0.95465 0.96543 1.02629 1.21994 0.88019 0.96822 1.00330 1.60472 1.06843 1.14632 1.50211 1.21966 0.95237 0.88961 1.00137 1.21191 0.92533 0.97367 0.99082 0.89246 1.21611 0.96727 0.99818 0.96836 1.21564 0.94572 0.97711 1.01460 1.22070 1.01408 0.93832 0.89792 1.61980 1.04334 1.24307 1.32488 1.21904 0.99866 0.85461 0.94834 0.91395 1.22519 0.99624 1.01176 1.00904 1.19190 0.87183 0.96934 0.97342 1.21136 0.91636 1.31238 1.08613 0.92160 1.25001 0.96458 0.96420 0.97043 1.69952 0.98390 1.46711 1.39621 0.86698 0.76548 0.80996 0.83948 1.20532 1.21736 1.20335 1.22015 0.89813 0.94986 0.99895 0.92615 0.92950 0.92585 0.92263 0.91008 0.91129 0.95677 0.84166 0.91048 0.95716 0.93201 0.92417 0.90816 0.92418 0.89589 0.96131 0.92638 0.94328 0.92868 0.96456 0.96341 0.93331 0.91412 0.96104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.99 6.19 -26.73 -0.17 -1.16 16 3 C 0.06 0.53 5.69 -3.82 -0.02 0.51 16 4 N -0.69 -7.48 6.50 -113.78 -0.74 -8.22 16 5 C 0.07 0.77 5.15 -3.82 -0.02 0.75 16 6 C -0.08 -1.14 2.56 -90.54 -0.23 -1.37 16 7 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 8 C -0.11 -1.45 5.00 -26.61 -0.13 -1.58 16 9 C -0.12 -1.75 6.09 -26.65 -0.16 -1.91 16 10 C 0.06 1.01 4.52 -3.83 -0.02 1.00 16 11 N -0.51 -9.69 4.28 -226.70 -0.97 -10.66 16 12 C 0.09 1.80 2.26 -67.72 -0.15 1.64 16 13 H 0.07 1.43 7.97 -51.93 -0.41 1.01 16 14 C -0.18 -3.21 8.43 37.15 0.31 -2.89 16 15 C 0.03 0.78 4.37 -27.88 -0.12 0.66 16 16 C -0.49 -13.79 8.81 -34.44 -0.30 -14.09 16 17 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 18 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 19 N -0.91 -27.53 13.29 55.43 0.74 -26.79 16 20 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.06 0.97 4.43 -3.84 -0.02 0.96 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.34 3.45 7.05 -39.30 -0.28 3.17 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.66 6.80 -51.93 -0.35 0.31 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.77 6.18 -51.93 -0.32 1.45 16 40 H 0.02 0.35 6.57 -51.93 -0.34 0.00 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.04 0.60 6.85 -51.93 -0.36 0.25 16 43 H 0.05 0.93 6.45 -51.93 -0.34 0.59 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.50 6.30 -51.92 -0.33 0.17 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 48 H 0.02 0.32 6.91 -51.93 -0.36 -0.04 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -29.60 361.08 -10.70 -40.30 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -9.38 Total: -0.62 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -0.76 Total: -16.77 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.97 Total: -45.68 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.60 -10.70 -40.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904127.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.767 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds