Wall clock time and date at job start Mon Mar 30 2020 07:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47170 * 2 1 4 4 N 1.46897 * 109.47044 * 180.02562 * 3 2 1 5 5 C 1.46900 * 110.99671 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46982 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.49948 * 54.92183 * 6 5 4 8 8 C 1.53114 * 109.50293 * 294.80280 * 6 5 4 9 9 C 1.53122 * 109.16032 * 182.40169 * 8 6 5 10 10 C 1.53041 * 109.27563 * 57.65784 * 9 8 6 11 11 N 1.46847 * 109.52326 * 300.81956 * 10 9 8 12 12 C 1.46894 * 110.99888 * 185.83852 * 11 10 9 13 13 H 1.09004 * 109.47107 * 186.73117 * 12 11 10 14 14 C 1.52992 * 109.47303 * 306.73758 * 12 11 10 15 15 C 1.52997 * 109.47138 * 66.73985 * 12 11 10 16 16 C 1.50702 * 109.47625 * 63.86658 * 15 12 11 17 17 H 1.08001 * 119.99348 * 0.02562 * 16 15 12 18 18 C 1.37873 * 120.00436 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99914 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46924 * 60.00577 * 20 18 16 22 22 H 1.48504 * 109.46621 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47032 * 300.00058 * 20 18 16 24 24 C 1.46845 * 111.19600 * 61.74060 * 11 10 9 25 25 H 1.08992 * 109.47430 * 60.00040 * 1 2 3 26 26 H 1.09004 * 109.46869 * 299.99652 * 1 2 3 27 27 H 1.09001 * 109.47319 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47527 * 119.99994 * 2 1 3 29 29 H 1.09002 * 109.47184 * 239.99914 * 2 1 3 30 30 H 1.09002 * 109.46890 * 300.00384 * 3 2 1 31 31 H 1.08993 * 109.47001 * 59.99939 * 3 2 1 32 32 H 1.00894 * 111.00345 * 303.95301 * 4 3 2 33 33 H 1.08997 * 109.47590 * 299.99686 * 5 4 3 34 34 H 1.08995 * 109.46966 * 60.00148 * 5 4 3 35 35 H 1.08995 * 109.52487 * 302.31270 * 8 6 5 36 36 H 1.09005 * 109.52229 * 62.50366 * 8 6 5 37 37 H 1.09002 * 109.50588 * 297.71746 * 9 8 6 38 38 H 1.09005 * 109.53562 * 177.61329 * 9 8 6 39 39 H 1.08998 * 109.46033 * 180.80467 * 10 9 8 40 40 H 1.09002 * 109.45579 * 60.82912 * 10 9 8 41 41 H 1.09003 * 109.47393 * 180.02562 * 14 12 11 42 42 H 1.08999 * 109.47471 * 299.99741 * 14 12 11 43 43 H 1.08994 * 109.47645 * 60.00179 * 14 12 11 44 44 H 1.09001 * 109.47783 * 183.87274 * 15 12 11 45 45 H 1.09008 * 109.47321 * 303.86763 * 15 12 11 46 46 H 0.96991 * 120.00451 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.45753 * 178.24138 * 24 11 10 48 48 H 1.08994 * 109.45477 * 58.27521 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0353 2.8140 -0.0013 6 6 5.5649 2.7731 -0.0012 7 1 5.9128 2.1728 -0.8418 8 6 6.0597 2.1549 1.3092 9 6 7.5907 2.1727 1.3267 10 6 8.0811 3.6131 1.1618 11 7 7.5818 4.1593 -0.1065 12 6 8.1454 5.4911 -0.3643 13 1 7.6702 5.9225 -1.2453 14 6 7.8937 6.3942 0.8447 15 6 9.6514 5.3696 -0.6053 16 6 9.8970 4.5584 -1.8515 17 1 9.0622 4.1689 -2.4153 18 6 11.1870 4.3145 -2.2722 19 7 12.2035 4.7892 -1.5859 20 14 11.4912 3.3096 -3.8173 21 1 10.8565 3.9830 -4.9787 22 1 12.9530 3.1916 -4.0511 23 1 10.9062 1.9550 -3.6499 24 6 6.1139 4.1960 -0.1276 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.8709 0.9163 0.7805 33 1 3.6856 3.3371 -0.8912 34 1 3.6862 3.3375 0.8887 35 1 5.6790 2.7328 2.1513 36 1 5.7067 1.1262 1.3828 37 1 7.9712 1.5628 0.5073 38 1 7.9491 1.7727 2.2752 39 1 9.1710 3.6276 1.1595 40 1 7.7115 4.2193 1.9889 41 1 8.3116 7.3826 0.6533 42 1 6.8208 6.4809 1.0165 43 1 8.3690 5.9629 1.7257 44 1 10.0812 6.3637 -0.7284 45 1 10.1172 4.8755 0.2474 46 1 13.1110 4.6173 -1.8816 47 1 5.7751 4.6340 -1.0664 48 1 5.7539 4.7996 0.7055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695904127.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:37 Heat of formation + Delta-G solvation = -43.761600 kcal Electronic energy + Delta-G solvation = -21422.273497 eV Core-core repulsion = 18509.912450 eV Total energy + Delta-G solvation = -2912.361047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52973 -38.08038 -36.24527 -34.64431 -33.69408 -31.83954 -31.01505 -29.12302 -27.13462 -25.73869 -25.00174 -23.90982 -23.02275 -22.14714 -20.68502 -20.04069 -18.32933 -17.16786 -16.92753 -16.54824 -16.15485 -15.69266 -15.43030 -15.32324 -14.99319 -14.66442 -14.53719 -14.17196 -13.95974 -13.70024 -13.57983 -13.15808 -13.09955 -12.94190 -12.80236 -12.68076 -12.59015 -12.41327 -12.27186 -11.98164 -11.85436 -11.77536 -11.62695 -11.47891 -11.34040 -11.08333 -11.03173 -10.80366 -10.45627 -9.33371 -8.83805 -8.08757 -6.13192 1.41750 1.44807 1.52192 2.48293 3.00733 3.25021 3.40146 3.85409 3.94257 4.04014 4.10338 4.18548 4.22733 4.37106 4.45117 4.45947 4.52097 4.53475 4.57333 4.62030 4.69518 4.69955 4.77614 4.84107 4.85650 4.92336 4.93098 5.00572 5.12648 5.16118 5.21045 5.23730 5.24635 5.31418 5.33452 5.39194 5.43493 5.53424 5.59604 5.72458 5.91268 6.12532 6.35666 6.49703 6.53400 6.60013 7.00335 7.52342 9.03179 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.003926 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.956970 B = 7129.833514 C = 7782.315616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.059 3.941 4 N -0.700 5.700 5 C 0.077 3.923 6 C -0.075 4.075 7 H 0.063 0.937 8 C -0.103 4.103 9 C -0.112 4.112 10 C 0.060 3.940 11 N -0.532 5.532 12 C 0.095 3.905 13 H 0.062 0.938 14 C -0.172 4.172 15 C 0.037 3.963 16 C -0.497 4.497 17 H 0.056 0.944 18 C -0.005 4.005 19 N -0.941 5.941 20 Si 0.955 3.045 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.065 3.935 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.032 0.968 32 H 0.345 0.655 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.051 0.949 44 H -0.010 1.010 45 H -0.004 1.004 46 H 0.258 0.742 47 H 0.064 0.936 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.531 -6.540 7.511 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.070 4.070 4 N -0.332 5.332 5 C -0.053 4.053 6 C -0.095 4.095 7 H 0.082 0.918 8 C -0.141 4.141 9 C -0.150 4.150 10 C -0.067 4.067 11 N -0.255 5.255 12 C -0.014 4.014 13 H 0.080 0.920 14 C -0.231 4.231 15 C 0.000 4.000 16 C -0.536 4.536 17 H 0.074 0.926 18 C -0.201 4.201 19 N -0.583 5.583 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.064 4.064 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.164 0.836 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.009 0.991 45 H 0.014 0.986 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.156 -6.916 6.443 23.172 hybrid contribution 0.533 0.593 0.623 1.012 sum -20.623 -6.323 7.066 22.699 Atomic orbital electron populations 1.21713 0.94672 1.02253 1.02022 1.21480 0.96312 0.95696 1.02334 1.22016 0.86946 0.97599 1.00438 1.60444 1.07944 1.14151 1.50702 1.21794 0.93314 0.89646 1.00532 1.21078 0.94119 0.95582 0.98681 0.91843 1.21553 0.94560 1.01244 0.96703 1.21536 0.96522 0.95378 1.01529 1.21996 0.99106 0.95851 0.89785 1.61858 1.06680 1.23395 1.33593 1.21595 0.96243 0.87322 0.96201 0.92009 1.22370 1.01340 1.00269 0.99124 1.19043 0.90856 0.94566 0.95562 1.21441 0.91594 1.31167 1.09381 0.92592 1.25841 0.96330 0.97641 1.00292 1.70081 0.98748 1.48107 1.41376 0.85648 0.76566 0.79446 0.80219 1.19508 1.21247 1.19828 1.22050 0.87390 0.96639 1.00302 0.92612 0.92425 0.91939 0.91826 0.92027 0.91561 0.94940 0.83622 0.91401 0.94545 0.91660 0.90477 0.93157 0.90489 0.93521 0.94622 0.92539 0.91651 0.93042 0.99136 0.98610 0.93294 0.91776 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.97 16 2 C -0.12 -1.69 6.19 30.59 0.19 -1.50 16 3 C 0.06 0.95 5.69 86.31 0.49 1.44 16 4 N -0.70 -13.56 6.50 -513.89 -3.34 -16.90 16 5 C 0.08 1.60 5.15 86.31 0.44 2.04 16 6 C -0.08 -1.94 2.56 -10.74 -0.03 -1.97 16 7 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 8 C -0.10 -2.39 5.00 30.67 0.15 -2.23 16 9 C -0.11 -3.28 6.09 30.65 0.19 -3.09 16 10 C 0.06 2.15 4.52 86.33 0.39 2.54 16 11 N -0.53 -20.25 4.28 -871.16 -3.73 -23.98 16 12 C 0.09 3.94 2.26 44.91 0.10 4.04 16 13 H 0.06 2.62 7.97 -2.38 -0.02 2.60 16 14 C -0.17 -5.86 8.43 71.98 0.61 -5.25 16 15 C 0.04 1.96 4.37 29.85 0.13 2.09 16 16 C -0.50 -28.89 8.81 25.60 0.23 -28.67 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 18 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 19 N -0.94 -58.72 13.29 21.45 0.28 -58.44 16 20 Si 0.96 46.48 29.54 68.60 2.03 48.51 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 24 C 0.06 1.93 4.43 86.33 0.38 2.31 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.34 6.03 7.05 -89.70 -0.63 5.40 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.53 6.80 -2.38 -0.02 1.51 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.05 2.01 6.18 -2.39 -0.01 1.99 16 40 H 0.04 1.15 6.57 -2.39 -0.02 1.13 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 1.88 6.85 -2.39 -0.02 1.86 16 43 H 0.05 1.76 6.45 -2.39 -0.02 1.74 16 44 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 45 H 0.00 -0.25 6.30 -2.38 -0.02 -0.26 16 46 H 0.26 15.32 8.31 -92.71 -0.77 14.54 16 47 H 0.06 1.95 8.00 -2.39 -0.02 1.93 16 48 H 0.04 0.98 6.91 -2.39 -0.02 0.96 16 Total: -1.00 -64.89 361.08 -0.05 -64.95 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.26 Total: 14.92 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 4.45 Total: -29.07 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -6.79 Total: -99.31 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -64.89 -0.05 -64.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904127.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.184 kcal (2) G-P(sol) polarization free energy of solvation -64.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds