Wall clock time and date at job start Mon Mar 30 2020 07:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47161 * 2 1 4 4 N 1.46902 * 109.47130 * 180.02562 * 3 2 1 5 5 C 1.46900 * 111.00016 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47421 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.50078 * 54.91916 * 6 5 4 8 8 C 1.53118 * 109.50077 * 294.80368 * 6 5 4 9 9 C 1.53118 * 109.15949 * 182.40576 * 8 6 5 10 10 C 1.53038 * 109.28261 * 57.65074 * 9 8 6 11 11 N 1.46848 * 109.52113 * 300.82348 * 10 9 8 12 12 C 1.46897 * 111.00028 * 185.83922 * 11 10 9 13 13 H 1.09000 * 109.47172 * 296.37505 * 12 11 10 14 14 C 1.52997 * 109.47476 * 176.37523 * 12 11 10 15 15 C 1.53008 * 109.46994 * 56.37535 * 12 11 10 16 16 C 1.50703 * 109.46930 * 182.46471 * 15 12 11 17 17 H 1.07998 * 120.00050 * 5.60287 * 16 15 12 18 18 C 1.37872 * 119.99845 * 185.60474 * 16 15 12 19 19 N 1.31514 * 120.00286 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00005 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47117 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.47084 * 119.99798 * 20 18 16 23 23 H 1.48496 * 109.47437 * 239.99861 * 20 18 16 24 24 C 1.46839 * 111.19978 * 61.74120 * 11 10 9 25 25 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47343 * 299.99838 * 1 2 3 27 27 H 1.08999 * 109.47489 * 59.99997 * 1 2 3 28 28 H 1.09003 * 109.47343 * 240.00162 * 2 1 3 29 29 H 1.08999 * 109.47489 * 120.00003 * 2 1 3 30 30 H 1.08998 * 109.47103 * 60.00295 * 3 2 1 31 31 H 1.08996 * 109.47133 * 299.99861 * 3 2 1 32 32 H 1.00903 * 110.99915 * 303.94936 * 4 3 2 33 33 H 1.08997 * 109.47567 * 59.99580 * 5 4 3 34 34 H 1.09005 * 109.46878 * 299.99686 * 5 4 3 35 35 H 1.09003 * 109.51934 * 302.30560 * 8 6 5 36 36 H 1.08993 * 109.52465 * 62.49509 * 8 6 5 37 37 H 1.09004 * 109.49978 * 297.70747 * 9 8 6 38 38 H 1.09000 * 109.50340 * 177.59239 * 9 8 6 39 39 H 1.08999 * 109.46061 * 180.80867 * 10 9 8 40 40 H 1.08997 * 109.45134 * 60.82844 * 10 9 8 41 41 H 1.08996 * 109.46870 * 59.99552 * 14 12 11 42 42 H 1.09001 * 109.47626 * 180.02562 * 14 12 11 43 43 H 1.09000 * 109.46905 * 300.00145 * 14 12 11 44 44 H 1.08997 * 109.47089 * 302.45900 * 15 12 11 45 45 H 1.08998 * 109.47119 * 62.46873 * 15 12 11 46 46 H 0.97004 * 120.00334 * 180.02562 * 19 18 16 47 47 H 1.09003 * 109.46286 * 178.24193 * 24 11 10 48 48 H 1.09000 * 109.45891 * 58.26951 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0354 2.8139 0.0000 6 6 5.5649 2.7731 -0.0013 7 1 5.9122 2.1737 -0.8429 8 6 6.0608 2.1532 1.3080 9 6 7.5918 2.1712 1.3243 10 6 8.0821 3.6117 1.1607 11 7 7.5817 4.1594 -0.1066 12 6 8.1452 5.4914 -0.3634 13 1 7.8109 6.1827 0.4103 14 6 7.6735 5.9898 -1.7309 15 6 9.6730 5.4103 -0.3494 16 6 10.2511 6.7871 -0.5526 17 1 9.5985 7.6469 -0.5885 18 6 11.6131 6.9491 -0.6926 19 7 12.4079 5.9022 -0.6484 20 14 12.3296 8.6556 -0.9452 21 1 11.2325 9.6564 -0.9566 22 1 13.2707 8.9661 0.1609 23 1 13.0553 8.7012 -2.2400 24 6 6.1139 4.1962 -0.1265 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.8709 0.9163 0.7806 33 1 3.6863 3.3368 0.8903 34 1 3.6855 3.3377 -0.8896 35 1 5.6808 2.7303 2.1510 36 1 5.7077 1.1247 1.3807 37 1 7.9716 1.5621 0.5039 38 1 7.9504 1.7703 2.2723 39 1 9.1719 3.6262 1.1575 40 1 7.7131 4.2169 1.9887 41 1 6.5852 6.0476 -1.7409 42 1 8.0920 6.9781 -1.9217 43 1 8.0078 5.2986 -2.5046 44 1 10.0070 5.0139 0.6095 45 1 10.0093 4.7531 -1.1513 46 1 13.3662 6.0162 -0.7466 47 1 5.7743 4.6352 -1.0646 48 1 5.7544 4.7988 0.7076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695904128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:41 Heat of formation + Delta-G solvation = -27.490049 kcal Electronic energy + Delta-G solvation = -21108.245179 eV Core-core repulsion = 18196.589720 eV Total energy + Delta-G solvation = -2911.655460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.19131 -37.06714 -35.03268 -33.24059 -32.37046 -30.78431 -29.81514 -27.13282 -26.13279 -24.39746 -23.91986 -22.25980 -21.74469 -21.19288 -19.42148 -18.93817 -16.64918 -16.31290 -15.56813 -15.04032 -14.94312 -14.52637 -14.33637 -14.09858 -13.70882 -13.50067 -13.26024 -12.97832 -12.87258 -12.55926 -12.28879 -12.09379 -11.93069 -11.55077 -11.39940 -11.17717 -11.06772 -11.03811 -10.90016 -10.78685 -10.71469 -10.54550 -10.40815 -10.15728 -9.83923 -9.70708 -9.13468 -9.00303 -8.58609 -8.30591 -7.60522 -5.97425 -3.98643 3.32017 3.39674 3.43222 3.92471 4.42442 4.57539 4.66474 4.77073 4.89346 5.00792 5.06859 5.10864 5.25169 5.38096 5.39573 5.42828 5.48230 5.54050 5.66468 5.70094 5.72014 5.74616 5.83616 5.89154 5.97005 5.98332 6.00273 6.06270 6.16305 6.19652 6.39018 6.40292 6.43632 6.57247 6.64213 6.78416 6.89162 6.99127 7.17539 7.21444 7.60999 7.69844 7.88267 7.91869 8.12480 8.47327 9.07882 9.64212 11.13964 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.045996 B = 0.003064 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.604342 B = 9136.174042 C = 9543.653401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.057 3.943 4 N -0.690 5.690 5 C 0.065 3.935 6 C -0.082 4.082 7 H 0.087 0.913 8 C -0.114 4.114 9 C -0.114 4.114 10 C 0.052 3.948 11 N -0.532 5.532 12 C 0.086 3.914 13 H 0.023 0.977 14 C -0.130 4.130 15 C 0.030 3.970 16 C -0.515 4.515 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.059 3.941 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.340 0.660 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.022 0.978 41 H 0.031 0.969 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.015 0.985 45 H 0.029 0.971 46 H 0.259 0.741 47 H 0.075 0.925 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.659 -9.876 3.201 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.072 4.072 4 N -0.321 5.321 5 C -0.064 4.064 6 C -0.101 4.101 7 H 0.106 0.894 8 C -0.152 4.152 9 C -0.152 4.152 10 C -0.076 4.076 11 N -0.257 5.257 12 C -0.021 4.021 13 H 0.041 0.959 14 C -0.187 4.187 15 C -0.007 4.007 16 C -0.554 4.554 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.070 4.070 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.158 0.842 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.040 0.960 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.033 0.967 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -19.273 -10.287 2.127 21.950 hybrid contribution 0.034 1.794 1.497 2.337 sum -19.239 -8.493 3.624 21.340 Atomic orbital electron populations 1.21730 0.95654 1.01727 1.01786 1.21508 0.95504 0.96506 1.02607 1.22000 0.87959 0.96858 1.00396 1.60502 1.06923 1.14553 1.50164 1.21968 0.95127 0.89038 1.00275 1.21193 0.92697 0.97247 0.98961 0.89425 1.21629 0.96626 0.99923 0.96992 1.21570 0.94755 0.97425 1.01479 1.22139 1.01646 0.93964 0.89820 1.61971 1.05215 1.25688 1.32819 1.21800 0.98794 0.85844 0.95614 0.95913 1.21762 0.97753 1.01889 0.97302 1.19210 0.86785 0.97157 0.97562 1.21229 0.91832 0.93107 1.49193 0.92688 1.24990 0.97317 0.96542 0.95550 1.69980 1.03767 1.28927 1.50593 0.86577 0.79135 0.84812 0.77705 1.19822 1.21129 1.21029 1.22067 0.89427 0.95042 1.00439 0.92569 0.92924 0.92609 0.91030 0.92253 0.95605 0.91105 0.84184 0.95581 0.91014 0.93011 0.92308 0.91102 0.92156 0.89222 0.96009 0.95051 0.91557 0.92631 0.96731 0.95241 0.93115 0.90660 0.96081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.15 0.37 -0.58 16 2 C -0.12 -0.92 6.19 -26.74 -0.17 -1.08 16 3 C 0.06 0.49 5.69 -3.82 -0.02 0.47 16 4 N -0.69 -6.96 6.50 -113.78 -0.74 -7.70 16 5 C 0.07 0.72 5.15 -3.82 -0.02 0.70 16 6 C -0.08 -1.05 2.56 -90.54 -0.23 -1.28 16 7 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 8 C -0.11 -1.38 5.00 -26.61 -0.13 -1.52 16 9 C -0.11 -1.61 6.09 -26.65 -0.16 -1.78 16 10 C 0.05 0.92 5.15 -3.83 -0.02 0.90 16 11 N -0.53 -9.84 4.53 -226.70 -1.03 -10.86 16 12 C 0.09 1.84 2.13 -67.71 -0.14 1.70 16 13 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 14 C -0.13 -2.54 8.74 37.16 0.32 -2.22 16 15 C 0.03 0.78 4.22 -27.88 -0.12 0.66 16 16 C -0.51 -14.40 8.27 -34.44 -0.28 -14.69 16 17 H 0.05 1.50 7.10 -52.49 -0.37 1.13 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 20 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.06 0.90 4.49 -3.84 -0.02 0.89 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.34 3.20 7.05 -39.29 -0.28 2.92 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.62 6.80 -51.93 -0.35 0.27 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.79 5.86 -51.93 -0.30 1.48 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.52 6.27 -51.93 -0.33 0.20 16 42 H 0.07 1.37 6.89 -51.93 -0.36 1.01 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.01 0.40 6.09 -51.93 -0.32 0.08 16 45 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 47 H 0.08 1.14 5.99 -51.93 -0.31 0.83 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -29.16 361.14 -10.69 -39.85 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -9.36 Total: -1.00 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.72 Total: -16.30 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -1.03 Total: -44.64 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.16 -10.69 -39.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.362 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds