Wall clock time and date at job start Mon Mar 30 2020 07:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47161 * 2 1 4 4 N 1.46902 * 109.47130 * 180.02562 * 3 2 1 5 5 C 1.46900 * 111.00016 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47421 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.50078 * 54.91916 * 6 5 4 8 8 C 1.53118 * 109.50077 * 294.80368 * 6 5 4 9 9 C 1.53118 * 109.15949 * 182.40576 * 8 6 5 10 10 C 1.53038 * 109.28261 * 57.65074 * 9 8 6 11 11 N 1.46848 * 109.52113 * 300.82348 * 10 9 8 12 12 C 1.46897 * 111.00028 * 185.83922 * 11 10 9 13 13 H 1.09000 * 109.47172 * 296.37505 * 12 11 10 14 14 C 1.52997 * 109.47476 * 176.37523 * 12 11 10 15 15 C 1.53008 * 109.46994 * 56.37535 * 12 11 10 16 16 C 1.50703 * 109.46930 * 182.46471 * 15 12 11 17 17 H 1.07998 * 120.00050 * 5.60287 * 16 15 12 18 18 C 1.37872 * 119.99845 * 185.60474 * 16 15 12 19 19 N 1.31514 * 120.00286 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00005 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47117 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.47084 * 119.99798 * 20 18 16 23 23 H 1.48496 * 109.47437 * 239.99861 * 20 18 16 24 24 C 1.46839 * 111.19978 * 61.74120 * 11 10 9 25 25 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47343 * 299.99838 * 1 2 3 27 27 H 1.08999 * 109.47489 * 59.99997 * 1 2 3 28 28 H 1.09003 * 109.47343 * 240.00162 * 2 1 3 29 29 H 1.08999 * 109.47489 * 120.00003 * 2 1 3 30 30 H 1.08998 * 109.47103 * 60.00295 * 3 2 1 31 31 H 1.08996 * 109.47133 * 299.99861 * 3 2 1 32 32 H 1.00903 * 110.99915 * 303.94936 * 4 3 2 33 33 H 1.08997 * 109.47567 * 59.99580 * 5 4 3 34 34 H 1.09005 * 109.46878 * 299.99686 * 5 4 3 35 35 H 1.09003 * 109.51934 * 302.30560 * 8 6 5 36 36 H 1.08993 * 109.52465 * 62.49509 * 8 6 5 37 37 H 1.09004 * 109.49978 * 297.70747 * 9 8 6 38 38 H 1.09000 * 109.50340 * 177.59239 * 9 8 6 39 39 H 1.08999 * 109.46061 * 180.80867 * 10 9 8 40 40 H 1.08997 * 109.45134 * 60.82844 * 10 9 8 41 41 H 1.08996 * 109.46870 * 59.99552 * 14 12 11 42 42 H 1.09001 * 109.47626 * 180.02562 * 14 12 11 43 43 H 1.09000 * 109.46905 * 300.00145 * 14 12 11 44 44 H 1.08997 * 109.47089 * 302.45900 * 15 12 11 45 45 H 1.08998 * 109.47119 * 62.46873 * 15 12 11 46 46 H 0.97004 * 120.00334 * 180.02562 * 19 18 16 47 47 H 1.09003 * 109.46286 * 178.24193 * 24 11 10 48 48 H 1.09000 * 109.45891 * 58.26951 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0354 2.8139 0.0000 6 6 5.5649 2.7731 -0.0013 7 1 5.9122 2.1737 -0.8429 8 6 6.0608 2.1532 1.3080 9 6 7.5918 2.1712 1.3243 10 6 8.0821 3.6117 1.1607 11 7 7.5817 4.1594 -0.1066 12 6 8.1452 5.4914 -0.3634 13 1 7.8109 6.1827 0.4103 14 6 7.6735 5.9898 -1.7309 15 6 9.6730 5.4103 -0.3494 16 6 10.2511 6.7871 -0.5526 17 1 9.5985 7.6469 -0.5885 18 6 11.6131 6.9491 -0.6926 19 7 12.4079 5.9022 -0.6484 20 14 12.3296 8.6556 -0.9452 21 1 11.2325 9.6564 -0.9566 22 1 13.2707 8.9661 0.1609 23 1 13.0553 8.7012 -2.2400 24 6 6.1139 4.1962 -0.1265 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.8709 0.9163 0.7806 33 1 3.6863 3.3368 0.8903 34 1 3.6855 3.3377 -0.8896 35 1 5.6808 2.7303 2.1510 36 1 5.7077 1.1247 1.3807 37 1 7.9716 1.5621 0.5039 38 1 7.9504 1.7703 2.2723 39 1 9.1719 3.6262 1.1575 40 1 7.7131 4.2169 1.9887 41 1 6.5852 6.0476 -1.7409 42 1 8.0920 6.9781 -1.9217 43 1 8.0078 5.2986 -2.5046 44 1 10.0070 5.0139 0.6095 45 1 10.0093 4.7531 -1.1513 46 1 13.3662 6.0162 -0.7466 47 1 5.7743 4.6352 -1.0646 48 1 5.7544 4.7988 0.7076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695904128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:40 Heat of formation + Delta-G solvation = -45.473927 kcal Electronic energy + Delta-G solvation = -21109.025019 eV Core-core repulsion = 18196.589720 eV Total energy + Delta-G solvation = -2912.435299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48016 -38.04807 -36.35392 -34.71284 -33.82494 -31.89227 -31.35515 -28.86907 -27.17743 -25.87568 -25.13596 -23.74545 -22.69818 -22.06473 -20.63837 -20.55388 -18.69105 -17.13404 -16.89378 -16.58589 -16.04179 -15.79827 -15.67133 -15.14347 -14.95322 -14.82568 -14.28232 -14.22496 -14.17406 -13.95093 -13.57861 -13.21096 -13.08545 -12.92888 -12.76703 -12.62700 -12.59955 -12.32409 -12.15717 -12.01742 -11.95611 -11.77732 -11.63288 -11.46825 -11.40349 -11.24016 -10.95719 -10.83135 -10.49678 -9.35086 -9.11059 -8.17882 -6.27299 1.39684 1.40079 1.52978 2.40670 2.95106 3.15432 3.33881 3.82200 3.89195 4.00784 4.09986 4.18703 4.28237 4.31775 4.36834 4.49670 4.52024 4.52843 4.60991 4.62045 4.67778 4.71842 4.73701 4.82897 4.84363 4.92650 4.97737 5.04858 5.09082 5.15451 5.21546 5.25049 5.26859 5.32690 5.33692 5.41806 5.44363 5.49790 5.54717 5.73764 5.80620 6.10536 6.15338 6.41154 6.42841 6.49689 6.88673 7.40493 8.94452 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.045996 B = 0.003064 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.604342 B = 9136.174042 C = 9543.653401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.058 3.942 4 N -0.697 5.697 5 C 0.075 3.925 6 C -0.073 4.073 7 H 0.073 0.927 8 C -0.107 4.107 9 C -0.108 4.108 10 C 0.052 3.948 11 N -0.542 5.542 12 C 0.095 3.905 13 H 0.016 0.984 14 C -0.121 4.121 15 C 0.040 3.960 16 C -0.530 4.530 17 H 0.060 0.940 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.279 1.279 24 C 0.060 3.940 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.344 0.656 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.021 0.979 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.045 0.955 44 H -0.008 1.008 45 H -0.007 1.007 46 H 0.262 0.738 47 H 0.079 0.921 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.710 -9.671 3.540 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.329 5.329 5 C -0.055 4.055 6 C -0.092 4.092 7 H 0.091 0.909 8 C -0.144 4.144 9 C -0.146 4.146 10 C -0.076 4.076 11 N -0.267 5.267 12 C -0.012 4.012 13 H 0.034 0.966 14 C -0.179 4.179 15 C 0.003 3.997 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.788 3.212 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.069 4.069 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.010 0.990 45 H 0.012 0.988 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -21.349 -10.090 2.471 23.742 hybrid contribution 0.671 1.676 1.407 2.288 sum -20.678 -8.414 3.877 22.658 Atomic orbital electron populations 1.21717 0.94767 1.02252 1.01984 1.21474 0.96240 0.95645 1.02409 1.22024 0.87001 0.97643 1.00422 1.60481 1.07888 1.13933 1.50588 1.21807 0.93374 0.89766 1.00538 1.21078 0.94103 0.95190 0.98853 0.90875 1.21590 0.94672 1.01437 0.96734 1.21530 0.96484 0.94544 1.02042 1.22109 0.99620 0.96388 0.89446 1.61930 1.07498 1.23781 1.33505 1.21521 0.95708 0.87476 0.96528 0.96607 1.21663 0.99810 1.00676 0.95739 1.19019 0.90316 0.95551 0.94820 1.21597 0.92372 0.93988 1.48897 0.92176 1.25935 0.97836 1.00879 0.95164 1.70120 1.04159 1.31440 1.51562 0.85432 0.78436 0.79654 0.77714 1.18562 1.20577 1.20454 1.22152 0.86958 0.97016 1.00727 0.91919 0.92567 0.92580 0.91813 0.91852 0.95159 0.91441 0.83640 0.94991 0.91106 0.92283 0.89969 0.92038 0.90402 0.92783 0.96032 0.91685 0.92779 0.93569 0.99024 0.98818 0.92914 0.90313 0.95720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.54 6.19 30.59 0.19 -1.35 16 3 C 0.06 0.88 5.69 86.30 0.49 1.37 16 4 N -0.70 -12.38 6.50 -513.89 -3.34 -15.72 16 5 C 0.07 1.46 5.15 86.30 0.44 1.91 16 6 C -0.07 -1.74 2.56 -10.74 -0.03 -1.77 16 7 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 8 C -0.11 -2.35 5.00 30.67 0.15 -2.19 16 9 C -0.11 -2.96 6.09 30.65 0.19 -2.78 16 10 C 0.05 1.88 5.15 86.33 0.44 2.32 16 11 N -0.54 -20.24 4.53 -871.13 -3.94 -24.18 16 12 C 0.10 4.14 2.13 44.92 0.10 4.23 16 13 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 14 C -0.12 -4.74 8.74 71.98 0.63 -4.11 16 15 C 0.04 2.18 4.22 29.85 0.13 2.31 16 16 C -0.53 -30.34 8.27 25.60 0.21 -30.13 16 17 H 0.06 3.31 7.10 -2.91 -0.02 3.29 16 18 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 19 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 20 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 C 0.06 1.74 4.49 86.33 0.39 2.13 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.34 5.50 7.05 -89.69 -0.63 4.87 16 33 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.48 6.80 -2.39 -0.02 1.46 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 2.30 5.86 -2.39 -0.01 2.28 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 2.08 6.27 -2.39 -0.01 2.06 16 42 H 0.05 2.22 6.89 -2.39 -0.02 2.20 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H -0.01 -0.49 6.09 -2.39 -0.01 -0.50 16 45 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 46 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 47 H 0.08 2.24 5.99 -2.39 -0.01 2.22 16 48 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -64.07 361.14 -0.21 -64.28 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.26 Total: 14.58 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 4.51 Total: -28.50 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -7.00 Total: -97.18 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.07 -0.21 -64.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.802 kcal (2) G-P(sol) polarization free energy of solvation -64.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds