Wall clock time and date at job start Mon Mar 30 2020 07:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 N 1.46895 * 109.47397 * 184.92943 * 3 2 1 5 5 C 1.46903 * 111.00196 * 184.66408 * 4 3 2 6 6 C 1.53002 * 109.46829 * 185.51038 * 5 4 3 7 7 H 1.08998 * 109.44924 * 176.25755 * 6 5 4 8 8 C 1.53032 * 109.46507 * 296.22718 * 6 5 4 9 9 C 1.53122 * 109.27987 * 179.19708 * 8 6 5 10 10 C 1.53114 * 109.15849 * 302.34841 * 9 8 6 11 11 C 1.53035 * 109.28232 * 57.65263 * 10 9 8 12 12 N 1.46845 * 109.46253 * 56.28494 * 6 5 4 13 13 C 1.46901 * 111.00103 * 54.14441 * 12 6 5 14 14 H 1.09001 * 109.46939 * 329.94762 * 13 12 6 15 15 C 1.53000 * 109.46804 * 209.95225 * 13 12 6 16 16 C 1.52997 * 109.47225 * 89.94789 * 13 12 6 17 17 C 1.50696 * 109.47396 * 288.54014 * 16 13 12 18 18 H 1.08003 * 119.99971 * 354.11625 * 17 16 13 19 19 C 1.37870 * 119.99819 * 174.11321 * 17 16 13 20 20 N 1.31522 * 119.99644 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00363 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46935 * 89.99857 * 21 19 17 23 23 H 1.48501 * 109.47016 * 209.99991 * 21 19 17 24 24 H 1.48497 * 109.47102 * 329.99850 * 21 19 17 25 25 H 1.08998 * 109.47317 * 300.00079 * 1 2 3 26 26 H 1.09001 * 109.47357 * 60.00227 * 1 2 3 27 27 H 1.08999 * 109.47482 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47317 * 239.99921 * 2 1 3 29 29 H 1.09001 * 109.46895 * 120.00038 * 2 1 3 30 30 H 1.09003 * 109.46883 * 64.92781 * 3 2 1 31 31 H 1.09003 * 109.46739 * 304.93121 * 3 2 1 32 32 H 1.00907 * 111.00049 * 308.61886 * 4 3 2 33 33 H 1.08999 * 109.46777 * 65.51498 * 5 4 3 34 34 H 1.08996 * 109.46954 * 305.50705 * 5 4 3 35 35 H 1.08998 * 109.50810 * 299.14351 * 8 6 5 36 36 H 1.09004 * 109.50337 * 59.25627 * 8 6 5 37 37 H 1.09004 * 109.51747 * 62.25229 * 9 8 6 38 38 H 1.09000 * 109.51947 * 182.44204 * 9 8 6 39 39 H 1.09004 * 109.50111 * 177.59864 * 10 9 8 40 40 H 1.09004 * 109.50528 * 297.70914 * 10 9 8 41 41 H 1.08994 * 109.46787 * 180.80156 * 11 10 9 42 42 H 1.09004 * 109.46226 * 60.83092 * 11 10 9 43 43 H 1.09000 * 109.46880 * 174.98760 * 15 13 12 44 44 H 1.09000 * 109.47859 * 54.98586 * 15 13 12 45 45 H 1.09001 * 109.47303 * 294.98311 * 15 13 12 46 46 H 1.08998 * 109.46760 * 48.54689 * 16 13 12 47 47 H 1.08999 * 109.46805 * 168.54264 * 16 13 12 48 48 H 0.97004 * 119.99597 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5041 1.4442 -0.1190 5 6 4.0395 2.8079 -0.0114 6 6 5.5463 2.7866 -0.2763 7 1 5.9317 3.8060 -0.2621 8 6 6.2432 1.9629 0.8089 9 6 7.7481 1.9276 0.5287 10 6 7.9860 1.3410 -0.8655 11 6 7.2386 2.1828 -1.9022 12 7 5.8035 2.1845 -1.5906 13 6 5.0375 2.8675 -2.6417 14 1 4.1119 3.2595 -2.2201 15 6 4.7089 1.8757 -3.7594 16 6 5.8673 4.0203 -3.2102 17 6 5.9530 5.1277 -2.1917 18 1 5.3875 5.0621 -1.2739 19 6 6.7532 6.2244 -2.4316 20 7 6.8283 7.1907 -1.5425 21 14 7.7307 6.3382 -4.0193 22 1 6.9137 7.0187 -5.0559 23 1 8.9741 7.1143 -3.7806 24 1 8.0815 4.9720 -4.4836 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.7505 1.9302 0.9309 31 1 1.6063 1.9811 -0.8426 32 1 3.9235 0.8358 0.5682 33 1 3.8522 3.1937 0.9907 34 1 3.5507 3.4490 -0.7449 35 1 6.0650 2.4188 1.7828 36 1 5.8483 0.9469 0.8045 37 1 8.1504 2.9398 0.5715 38 1 8.2431 1.3059 1.2748 39 1 9.0530 1.3527 -1.0880 40 1 7.6186 0.3152 -0.8963 41 1 7.3943 1.7594 -2.8944 42 1 7.6161 3.2051 -1.8804 43 1 4.0659 2.3580 -4.4956 44 1 4.1950 1.0113 -3.3389 45 1 5.6318 1.5513 -4.2402 46 1 6.8704 3.6644 -3.4453 47 1 5.3935 4.3964 -4.1168 48 1 7.3916 7.9622 -1.7111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695909210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:06 Heat of formation + Delta-G solvation = -10.279824 kcal Electronic energy + Delta-G solvation = -22684.900315 eV Core-core repulsion = 19773.991146 eV Total energy + Delta-G solvation = -2910.909168 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.22132 -36.30969 -34.63917 -33.12434 -32.32557 -30.19705 -29.47603 -27.88841 -26.14740 -23.83497 -23.60590 -22.47553 -21.30445 -20.55326 -19.50674 -18.12817 -16.66646 -16.03465 -15.31068 -15.03161 -14.62716 -14.23776 -14.04051 -13.59009 -13.51811 -13.26952 -13.12707 -12.62344 -12.42180 -12.26740 -12.06377 -11.78047 -11.65497 -11.58362 -11.32805 -11.16520 -11.08468 -10.91631 -10.69016 -10.63131 -10.45344 -10.24371 -10.06933 -9.85399 -9.63734 -9.52515 -9.20904 -8.93020 -8.54788 -7.93144 -7.06568 -6.05020 -4.01866 3.29479 3.37484 3.41248 4.44536 4.47110 4.81007 5.01194 5.11756 5.29729 5.33040 5.36663 5.40554 5.48318 5.60801 5.70453 5.78725 5.82600 5.88258 5.93717 6.00506 6.05527 6.14594 6.21381 6.24978 6.26973 6.30713 6.33113 6.37446 6.43360 6.49378 6.53713 6.65167 6.72318 6.77373 6.84021 6.91955 6.95921 7.16063 7.30288 7.34768 7.47845 7.78605 7.80040 8.18387 8.22513 8.52246 8.98502 9.58261 11.06891 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.006092 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.974107 B = 4595.016342 C = 5052.339418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.057 3.943 4 N -0.667 5.667 5 C 0.066 3.934 6 C 0.078 3.922 7 H 0.082 0.918 8 C -0.109 4.109 9 C -0.117 4.117 10 C -0.112 4.112 11 C 0.049 3.951 12 N -0.498 5.498 13 C 0.091 3.909 14 H 0.074 0.926 15 C -0.131 4.131 16 C -0.051 4.051 17 C -0.514 4.514 18 H 0.078 0.922 19 C 0.069 3.931 20 N -0.903 5.903 21 Si 0.874 3.126 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.265 1.265 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.019 0.981 31 H 0.068 0.932 32 H 0.334 0.666 33 H 0.022 0.978 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.039 0.961 46 H 0.027 0.973 47 H 0.008 0.992 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -13.270 3.613 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.072 4.072 4 N -0.298 5.298 5 C -0.063 4.063 6 C -0.031 4.031 7 H 0.100 0.900 8 C -0.147 4.147 9 C -0.155 4.155 10 C -0.150 4.150 11 C -0.079 4.079 12 N -0.222 5.222 13 C -0.017 4.017 14 H 0.092 0.908 15 C -0.189 4.189 16 C -0.089 4.089 17 C -0.552 4.552 18 H 0.096 0.904 19 C -0.132 4.132 20 N -0.542 5.542 21 Si 0.702 3.298 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.190 1.190 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.040 0.960 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.045 0.955 47 H 0.026 0.974 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.369 -13.570 2.978 14.895 hybrid contribution 0.751 1.375 0.075 1.569 sum -4.618 -12.195 3.054 13.393 Atomic orbital electron populations 1.21724 0.96008 1.01337 1.01706 1.21497 0.95236 0.96921 1.02290 1.21996 0.89426 0.96291 0.99515 1.60402 1.03324 1.10155 1.55890 1.22096 0.95765 0.89674 0.98753 1.21831 0.93004 0.98666 0.89605 0.89995 1.21586 0.95369 1.00293 0.97432 1.21511 0.96327 1.00918 0.96722 1.21560 0.98741 0.99635 0.95087 1.22114 0.89271 0.99570 0.96949 1.62171 1.05994 1.53095 1.00931 1.21584 0.97077 0.91994 0.91090 0.90767 1.21729 0.99950 0.99523 0.97707 1.20410 0.96415 0.95059 0.97013 1.21212 1.27215 1.02074 1.04694 0.90448 1.25004 0.96490 0.95570 0.96147 1.69915 1.40052 1.09240 1.35006 0.86866 0.79865 0.78438 0.84651 1.20483 1.21620 1.18995 0.93092 0.92633 0.92905 0.90996 0.92661 0.96317 0.91359 0.84820 0.95996 0.90301 0.92985 0.91934 0.92037 0.93118 0.92853 0.92172 0.92312 0.92334 0.93971 0.92620 0.94190 0.95462 0.97362 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.15 0.37 -1.01 16 2 C -0.12 -1.29 6.15 -26.73 -0.16 -1.45 16 3 C 0.06 0.72 5.70 -3.83 -0.02 0.70 16 4 N -0.67 -9.53 6.22 -113.78 -0.71 -10.24 16 5 C 0.07 1.10 4.84 -3.82 -0.02 1.08 16 6 C 0.08 1.41 1.66 -67.72 -0.11 1.30 16 7 H 0.08 1.85 5.27 -51.93 -0.27 1.58 16 8 C -0.11 -1.68 5.13 -26.65 -0.14 -1.82 16 9 C -0.12 -1.82 6.00 -26.61 -0.16 -1.98 16 10 C -0.11 -1.78 6.09 -26.65 -0.16 -1.94 16 11 C 0.05 0.92 3.99 -3.83 -0.02 0.91 16 12 N -0.50 -9.21 4.07 -218.77 -0.89 -10.10 16 13 C 0.09 1.81 2.25 -67.71 -0.15 1.66 16 14 H 0.07 1.55 5.10 -51.93 -0.26 1.29 16 15 C -0.13 -2.31 9.36 37.16 0.35 -1.96 16 16 C -0.05 -1.18 3.05 -27.89 -0.09 -1.27 16 17 C -0.51 -13.80 7.61 -34.44 -0.26 -14.06 16 18 H 0.08 2.20 5.93 -52.48 -0.31 1.89 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 21 Si 0.87 21.66 27.59 -169.99 -4.69 16.97 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.27 -6.37 6.38 56.52 0.36 -6.01 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.02 0.23 8.13 -51.93 -0.42 -0.19 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.33 4.47 7.06 -39.29 -0.28 4.19 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 1.48 5.97 -51.93 -0.31 1.17 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.91 6.75 -51.93 -0.35 0.56 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.09 7.17 -51.93 -0.37 0.72 16 42 H 0.06 1.30 5.99 -51.93 -0.31 0.99 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.04 0.69 7.54 -51.93 -0.39 0.30 16 46 H 0.03 0.65 4.29 -51.93 -0.22 0.43 16 47 H 0.01 0.20 7.81 -51.93 -0.41 -0.21 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -27.96 348.95 -9.94 -37.90 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -9.01 Total: 4.52 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.67 Total: -17.99 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.82 Total: -46.65 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.69 Total: 16.97 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.96 -9.94 -37.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695909210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.615 kcal (2) G-P(sol) polarization free energy of solvation -27.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds