Wall clock time and date at job start Mon Mar 30 2020 07:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 N 1.46895 * 109.47397 * 184.92943 * 3 2 1 5 5 C 1.46903 * 111.00196 * 184.66408 * 4 3 2 6 6 C 1.53002 * 109.46829 * 185.51038 * 5 4 3 7 7 H 1.08998 * 109.44924 * 176.25755 * 6 5 4 8 8 C 1.53032 * 109.46507 * 296.22718 * 6 5 4 9 9 C 1.53122 * 109.27987 * 179.19708 * 8 6 5 10 10 C 1.53114 * 109.15849 * 302.34841 * 9 8 6 11 11 C 1.53035 * 109.28232 * 57.65263 * 10 9 8 12 12 N 1.46845 * 109.46253 * 56.28494 * 6 5 4 13 13 C 1.46901 * 111.00103 * 54.14441 * 12 6 5 14 14 H 1.09001 * 109.46939 * 329.94762 * 13 12 6 15 15 C 1.53000 * 109.46804 * 209.95225 * 13 12 6 16 16 C 1.52997 * 109.47225 * 89.94789 * 13 12 6 17 17 C 1.50696 * 109.47396 * 288.54014 * 16 13 12 18 18 H 1.08003 * 119.99971 * 354.11625 * 17 16 13 19 19 C 1.37870 * 119.99819 * 174.11321 * 17 16 13 20 20 N 1.31522 * 119.99644 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00363 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46935 * 89.99857 * 21 19 17 23 23 H 1.48501 * 109.47016 * 209.99991 * 21 19 17 24 24 H 1.48497 * 109.47102 * 329.99850 * 21 19 17 25 25 H 1.08998 * 109.47317 * 300.00079 * 1 2 3 26 26 H 1.09001 * 109.47357 * 60.00227 * 1 2 3 27 27 H 1.08999 * 109.47482 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47317 * 239.99921 * 2 1 3 29 29 H 1.09001 * 109.46895 * 120.00038 * 2 1 3 30 30 H 1.09003 * 109.46883 * 64.92781 * 3 2 1 31 31 H 1.09003 * 109.46739 * 304.93121 * 3 2 1 32 32 H 1.00907 * 111.00049 * 308.61886 * 4 3 2 33 33 H 1.08999 * 109.46777 * 65.51498 * 5 4 3 34 34 H 1.08996 * 109.46954 * 305.50705 * 5 4 3 35 35 H 1.08998 * 109.50810 * 299.14351 * 8 6 5 36 36 H 1.09004 * 109.50337 * 59.25627 * 8 6 5 37 37 H 1.09004 * 109.51747 * 62.25229 * 9 8 6 38 38 H 1.09000 * 109.51947 * 182.44204 * 9 8 6 39 39 H 1.09004 * 109.50111 * 177.59864 * 10 9 8 40 40 H 1.09004 * 109.50528 * 297.70914 * 10 9 8 41 41 H 1.08994 * 109.46787 * 180.80156 * 11 10 9 42 42 H 1.09004 * 109.46226 * 60.83092 * 11 10 9 43 43 H 1.09000 * 109.46880 * 174.98760 * 15 13 12 44 44 H 1.09000 * 109.47859 * 54.98586 * 15 13 12 45 45 H 1.09001 * 109.47303 * 294.98311 * 15 13 12 46 46 H 1.08998 * 109.46760 * 48.54689 * 16 13 12 47 47 H 1.08999 * 109.46805 * 168.54264 * 16 13 12 48 48 H 0.97004 * 119.99597 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5041 1.4442 -0.1190 5 6 4.0395 2.8079 -0.0114 6 6 5.5463 2.7866 -0.2763 7 1 5.9317 3.8060 -0.2621 8 6 6.2432 1.9629 0.8089 9 6 7.7481 1.9276 0.5287 10 6 7.9860 1.3410 -0.8655 11 6 7.2386 2.1828 -1.9022 12 7 5.8035 2.1845 -1.5906 13 6 5.0375 2.8675 -2.6417 14 1 4.1119 3.2595 -2.2201 15 6 4.7089 1.8757 -3.7594 16 6 5.8673 4.0203 -3.2102 17 6 5.9530 5.1277 -2.1917 18 1 5.3875 5.0621 -1.2739 19 6 6.7532 6.2244 -2.4316 20 7 6.8283 7.1907 -1.5425 21 14 7.7307 6.3382 -4.0193 22 1 6.9137 7.0187 -5.0559 23 1 8.9741 7.1143 -3.7806 24 1 8.0815 4.9720 -4.4836 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.7505 1.9302 0.9309 31 1 1.6063 1.9811 -0.8426 32 1 3.9235 0.8358 0.5682 33 1 3.8522 3.1937 0.9907 34 1 3.5507 3.4490 -0.7449 35 1 6.0650 2.4188 1.7828 36 1 5.8483 0.9469 0.8045 37 1 8.1504 2.9398 0.5715 38 1 8.2431 1.3059 1.2748 39 1 9.0530 1.3527 -1.0880 40 1 7.6186 0.3152 -0.8963 41 1 7.3943 1.7594 -2.8944 42 1 7.6161 3.2051 -1.8804 43 1 4.0659 2.3580 -4.4956 44 1 4.1950 1.0113 -3.3389 45 1 5.6318 1.5513 -4.2402 46 1 6.8704 3.6644 -3.4453 47 1 5.3935 4.3964 -4.1168 48 1 7.3916 7.9622 -1.7111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695909210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:05 Heat of formation + Delta-G solvation = -27.779598 kcal Electronic energy + Delta-G solvation = -22685.659162 eV Core-core repulsion = 19773.991146 eV Total energy + Delta-G solvation = -2911.668015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.71499 -37.46937 -36.18933 -34.41743 -34.19794 -31.42991 -31.02658 -29.75740 -27.31718 -25.10428 -24.96009 -24.37281 -22.35744 -21.83892 -21.01473 -19.76509 -18.70926 -17.35683 -16.67859 -16.41636 -16.21251 -15.59768 -15.41238 -15.14033 -14.94775 -14.69008 -14.25092 -14.22338 -13.86149 -13.67038 -13.48285 -13.29742 -13.17511 -12.79454 -12.71960 -12.62684 -12.37690 -12.27928 -12.18399 -11.97493 -11.79827 -11.59568 -11.55031 -11.46784 -11.27777 -11.15864 -10.78557 -10.75363 -10.65409 -9.12667 -8.71722 -8.24232 -6.24607 1.30194 1.32439 1.42496 2.34987 3.06417 3.24354 3.45221 3.94021 4.03089 4.12209 4.16631 4.27155 4.31914 4.45553 4.52094 4.56804 4.62193 4.70577 4.73775 4.74779 4.82747 4.86912 4.92391 4.94352 5.00708 5.05841 5.10315 5.13017 5.18213 5.20158 5.23563 5.26103 5.34799 5.38007 5.39176 5.41683 5.46681 5.55390 5.62221 5.68938 5.76369 6.20411 6.33724 6.58903 6.61196 6.73170 6.81407 7.37649 8.89775 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.006092 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.974107 B = 4595.016342 C = 5052.339418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.058 3.942 4 N -0.664 5.664 5 C 0.078 3.922 6 C 0.080 3.920 7 H 0.029 0.971 8 C -0.102 4.102 9 C -0.117 4.117 10 C -0.105 4.105 11 C 0.048 3.952 12 N -0.482 5.482 13 C 0.092 3.908 14 H 0.061 0.939 15 C -0.120 4.120 16 C -0.046 4.046 17 C -0.503 4.503 18 H 0.049 0.951 19 C 0.011 3.989 20 N -0.949 5.949 21 Si 0.933 3.067 22 H -0.273 1.273 23 H -0.289 1.289 24 H -0.251 1.251 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.055 0.945 32 H 0.343 0.657 33 H 0.024 0.976 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.032 0.968 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.016 0.984 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.027 0.973 47 H 0.005 0.995 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 -16.207 3.244 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.071 4.071 4 N -0.297 5.297 5 C -0.052 4.052 6 C -0.029 4.029 7 H 0.047 0.953 8 C -0.140 4.140 9 C -0.154 4.154 10 C -0.143 4.143 11 C -0.080 4.080 12 N -0.206 5.206 13 C -0.016 4.016 14 H 0.079 0.921 15 C -0.178 4.178 16 C -0.084 4.084 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.186 4.186 20 N -0.591 5.591 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.215 1.215 24 H -0.175 1.175 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.162 0.838 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.023 0.977 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.457 -16.535 2.605 17.606 hybrid contribution 0.715 2.300 0.259 2.423 sum -4.742 -14.234 2.864 15.274 Atomic orbital electron populations 1.21707 0.94885 1.02244 1.01725 1.21426 0.96132 0.95072 1.02483 1.22023 0.88142 0.97871 0.99058 1.60328 1.04485 1.08512 1.56326 1.21827 0.94621 0.90842 0.97923 1.21724 0.94178 0.96406 0.90630 0.95343 1.21546 0.95205 1.00732 0.96477 1.21519 0.96342 0.99911 0.97658 1.21522 0.99153 0.99687 0.93916 1.22124 0.89385 0.97895 0.98589 1.62318 1.05830 1.51850 1.00612 1.21543 0.96075 0.91775 0.92242 0.92108 1.21616 1.00439 0.99011 0.96741 1.20384 0.97041 0.95197 0.95818 1.21452 1.25610 1.02780 1.04282 0.93325 1.25797 0.97966 0.95456 0.99363 1.70057 1.41659 1.10175 1.37222 0.85913 0.78437 0.79023 0.80811 1.19867 1.21506 1.17505 0.92742 0.93014 0.91547 0.91599 0.91582 0.96062 0.92685 0.83770 0.95809 0.93039 0.92283 0.89815 0.94902 0.90039 0.91522 0.90301 0.91813 0.96574 0.93216 0.91494 0.93676 0.95467 0.97677 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.67 16 2 C -0.11 -2.14 6.15 30.59 0.19 -1.95 16 3 C 0.06 1.40 5.70 86.30 0.49 1.89 16 4 N -0.66 -18.14 6.22 -513.89 -3.20 -21.33 16 5 C 0.08 2.62 4.84 86.30 0.42 3.04 16 6 C 0.08 2.95 1.66 44.94 0.07 3.02 16 7 H 0.03 1.38 5.27 -2.39 -0.01 1.37 16 8 C -0.10 -3.01 5.13 30.65 0.16 -2.86 16 9 C -0.12 -3.44 6.00 30.67 0.18 -3.26 16 10 C -0.11 -3.09 6.09 30.64 0.19 -2.91 16 11 C 0.05 1.79 3.99 86.32 0.34 2.14 16 12 N -0.48 -17.64 4.07 -846.05 -3.44 -21.08 16 13 C 0.09 3.67 2.25 44.91 0.10 3.77 16 14 H 0.06 2.61 5.10 -2.39 -0.01 2.60 16 15 C -0.12 -4.00 9.36 71.98 0.67 -3.33 16 16 C -0.05 -2.17 3.05 29.85 0.09 -2.08 16 17 C -0.50 -28.14 7.61 25.60 0.19 -27.95 16 18 H 0.05 2.96 5.93 -2.91 -0.02 2.94 16 19 C 0.01 0.61 5.47 84.65 0.46 1.08 16 20 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 21 Si 0.93 45.32 27.59 68.60 1.89 47.22 16 22 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.25 -11.50 6.38 99.48 0.63 -10.87 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.02 0.50 8.13 -2.39 -0.02 0.48 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.34 8.34 7.06 -89.69 -0.63 7.70 16 33 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 34 H 0.05 2.02 5.97 -2.39 -0.01 2.01 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 2.16 6.75 -2.39 -0.02 2.15 16 37 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.06 2.27 7.17 -2.39 -0.02 2.25 16 42 H 0.02 0.73 5.99 -2.38 -0.01 0.72 16 43 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.04 1.45 7.54 -2.39 -0.02 1.43 16 46 H 0.03 1.29 4.29 -2.39 -0.01 1.28 16 47 H 0.00 0.24 7.81 -2.39 -0.02 0.22 16 48 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -62.51 348.95 0.04 -62.48 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.20 Total: 22.88 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 4.28 Total: -31.06 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -6.34 Total: -101.51 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.89 Total: 47.22 kcal Total: -62.51 0.04 -62.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695909210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.697 kcal (2) G-P(sol) polarization free energy of solvation -62.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds