Wall clock time and date at job start Mon Mar 30 2020 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 N 1.46905 * 109.47134 * 119.99806 * 2 1 3 5 5 C 1.46901 * 110.99870 * 155.00327 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 H 1.09001 * 110.28385 * 305.69611 * 6 5 4 8 8 C 1.54254 * 110.32476 * 67.82745 * 6 5 4 9 9 C 1.54381 * 105.06234 * 118.89418 * 8 6 5 10 10 N 1.48561 * 104.59119 * 23.85249 * 9 8 6 11 11 C 1.46903 * 110.99787 * 200.95866 * 10 9 8 12 12 C 1.52995 * 109.47046 * 290.12657 * 11 10 9 13 13 C 1.53006 * 109.47144 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47144 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47244 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99489 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00252 * 179.97438 * 15 14 13 18 18 N 1.31507 * 119.99636 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99928 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47172 * 89.99581 * 19 17 15 21 21 H 1.48500 * 109.47331 * 209.99737 * 19 17 15 22 22 H 1.48498 * 109.47104 * 329.99935 * 19 17 15 23 23 C 1.48717 * 104.28828 * 320.57114 * 10 9 8 24 24 H 1.08998 * 109.47174 * 299.99851 * 1 2 3 25 25 H 1.08995 * 109.47390 * 60.00523 * 1 2 3 26 26 H 1.09009 * 109.46630 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47472 * 239.99831 * 2 1 3 28 28 H 1.08999 * 109.47123 * 299.99642 * 3 2 1 29 29 H 1.08997 * 109.47624 * 60.00208 * 3 2 1 30 30 H 1.09006 * 109.47163 * 180.02562 * 3 2 1 31 31 H 1.00901 * 110.99869 * 31.05038 * 4 2 1 32 32 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 33 33 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 34 34 H 1.09003 * 110.32415 * 237.79164 * 8 6 5 35 35 H 1.09007 * 110.32795 * 359.89910 * 8 6 5 36 36 H 1.08999 * 110.41190 * 142.62829 * 9 8 6 37 37 H 1.09000 * 110.40915 * 265.07292 * 9 8 6 38 38 H 1.08996 * 109.47215 * 50.12551 * 11 10 9 39 39 H 1.09003 * 109.46969 * 170.12845 * 11 10 9 40 40 H 1.09006 * 109.47053 * 299.99966 * 12 11 10 41 41 H 1.08999 * 109.47364 * 59.99833 * 12 11 10 42 42 H 1.08995 * 109.46670 * 300.00040 * 13 12 11 43 43 H 1.09003 * 109.46903 * 60.00168 * 13 12 11 44 44 H 1.09006 * 109.47053 * 299.99988 * 14 13 12 45 45 H 1.08999 * 109.47364 * 59.99854 * 14 13 12 46 46 H 0.97007 * 119.99476 * 179.97438 * 18 17 15 47 47 H 1.08997 * 110.39311 * 280.64188 * 23 10 9 48 48 H 1.08998 * 110.50872 * 158.14943 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3671 -1.2354 0.9807 6 6 3.8417 -1.9481 2.2487 7 1 3.7749 -1.2785 3.1061 8 6 3.0031 -3.2192 2.4947 9 6 4.0154 -4.3837 2.4444 10 7 5.3217 -3.7586 2.7757 11 6 6.4375 -4.5870 2.2995 12 6 6.5175 -5.8650 3.1369 13 6 7.6793 -6.7281 2.6406 14 6 7.7596 -8.0057 3.4784 15 6 8.9043 -8.8556 2.9899 16 1 9.5132 -8.5183 2.1641 17 6 9.1741 -10.0637 3.5971 18 7 10.1727 -10.8055 3.1705 19 14 8.1204 -10.6474 5.0249 20 1 6.9809 -11.4455 4.5053 21 1 8.9401 -11.4884 5.9337 22 1 7.6025 -9.4723 5.7706 23 6 5.2912 -2.4491 2.0714 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.3793 -1.4182 1.4848 32 1 3.3431 -1.9444 0.1532 33 1 4.0523 -0.4219 0.7426 34 1 2.5259 -3.1743 3.4737 35 1 2.2520 -3.3344 1.7131 36 1 3.7588 -5.1426 3.1835 37 1 4.0446 -4.8190 1.4455 38 1 6.2761 -4.8476 1.2536 39 1 7.3699 -4.0307 2.3957 40 1 6.6790 -5.6044 4.1830 41 1 5.5851 -6.4213 3.0409 42 1 7.5173 -6.9886 1.5947 43 1 8.6118 -6.1720 2.7364 44 1 7.9218 -7.7448 4.5242 45 1 6.8271 -8.5620 3.3831 46 1 10.3628 -11.6553 3.5980 47 1 5.5211 -2.5811 1.0141 48 1 5.9930 -1.7525 2.5298 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719062423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:57 Heat of formation + Delta-G solvation = -27.485788 kcal Electronic energy + Delta-G solvation = -20290.761019 eV Core-core repulsion = 17379.105744 eV Total energy + Delta-G solvation = -2911.655275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.50799 -37.50307 -35.21932 -33.40646 -32.10953 -30.57672 -29.21165 -28.22813 -27.63924 -24.94819 -23.86225 -22.13389 -21.01644 -20.61087 -20.09824 -19.65154 -16.78180 -16.60363 -16.07920 -15.74743 -15.21273 -14.89470 -14.57295 -14.19062 -13.94267 -13.53978 -13.23378 -12.91249 -12.84569 -12.79645 -12.53418 -12.48569 -12.03851 -11.95349 -11.62924 -11.60613 -11.47628 -11.44470 -11.07512 -10.94081 -10.90217 -10.72400 -10.63858 -10.42819 -9.83629 -9.64183 -9.44724 -9.11645 -8.81834 -8.50042 -8.47376 -6.00569 -3.97941 3.33708 3.40874 3.46072 3.64601 4.02309 4.43033 4.49161 4.55765 4.56624 4.58919 4.78308 4.92972 5.07695 5.11770 5.23043 5.25346 5.29582 5.33119 5.35339 5.42799 5.45590 5.47948 5.50681 5.54451 5.61055 5.66241 5.72924 5.84571 5.90336 5.92506 5.96351 6.05314 6.08843 6.16308 6.41206 6.67211 6.68797 6.80824 6.86591 6.94292 7.01951 7.13306 7.37826 7.51087 7.84856 8.58881 9.04710 9.62543 11.13026 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.049292 B = 0.002430 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.911315 B =11520.446671 C =11749.798028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.076 3.924 3 C -0.140 4.140 4 N -0.686 5.686 5 C 0.067 3.933 6 C -0.090 4.090 7 H 0.088 0.912 8 C -0.119 4.119 9 C 0.032 3.968 10 N -0.510 5.510 11 C 0.046 3.954 12 C -0.114 4.114 13 C -0.102 4.102 14 C -0.014 4.014 15 C -0.519 4.519 16 H 0.070 0.930 17 C 0.063 3.937 18 N -0.906 5.906 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.037 3.963 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.341 0.659 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.009 0.991 46 H 0.262 0.738 47 H 0.042 0.958 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.315 23.046 -5.454 30.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.033 4.033 3 C -0.198 4.198 4 N -0.318 5.318 5 C -0.063 4.063 6 C -0.109 4.109 7 H 0.107 0.893 8 C -0.157 4.157 9 C -0.096 4.096 10 N -0.234 5.234 11 C -0.082 4.082 12 C -0.152 4.152 13 C -0.140 4.140 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.088 0.912 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.092 4.092 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.028 0.972 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.910 23.514 -4.556 30.516 hybrid contribution -0.654 -1.408 -0.816 1.754 sum -19.564 22.106 -5.373 30.005 Atomic orbital electron populations 1.21976 0.94685 1.01931 1.02640 1.21519 0.94788 0.95682 0.91360 1.21790 1.01075 0.95249 1.01639 1.60542 1.03811 1.33273 1.34210 1.22069 0.90721 0.97536 0.95943 1.21911 0.94157 0.96580 0.98248 0.89329 1.22370 0.97331 0.94076 1.01963 1.23126 0.89670 0.97018 0.99834 1.65433 1.02259 1.02809 1.52912 1.22379 0.93894 0.95000 0.96958 1.21646 0.99657 0.94080 0.99822 1.21428 0.96113 0.96754 0.99682 1.19567 0.96828 0.93127 0.95598 1.21195 1.13593 1.03079 1.17847 0.91154 1.25057 0.95073 0.96562 0.97028 1.69925 1.29586 1.12923 1.42066 0.86754 0.80511 0.78951 0.82939 1.20383 1.21438 1.18940 1.23135 0.96538 0.92491 0.97012 0.91659 0.91924 0.92802 0.94057 0.92735 0.91955 0.92832 0.84004 0.95325 0.90871 0.90835 0.92032 0.89931 0.94012 0.94863 0.90826 0.91669 0.92751 0.93164 0.92833 0.96624 0.97249 0.92828 0.93990 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.18 37.16 0.34 -0.51 16 2 C 0.08 0.51 3.22 -67.71 -0.22 0.29 16 3 C -0.14 -0.91 9.41 37.16 0.35 -0.56 16 4 N -0.69 -5.14 6.31 -106.72 -0.67 -5.82 16 5 C 0.07 0.53 4.64 -3.82 -0.02 0.51 16 6 C -0.09 -0.80 3.30 -89.24 -0.29 -1.09 16 7 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 8 C -0.12 -1.08 6.15 -25.35 -0.16 -1.23 16 9 C 0.03 0.36 5.74 -2.18 -0.01 0.35 16 10 N -0.51 -6.51 5.37 -229.83 -1.23 -7.75 16 11 C 0.05 0.64 4.81 -3.82 -0.02 0.63 16 12 C -0.11 -1.90 5.27 -26.73 -0.14 -2.04 16 13 C -0.10 -2.06 5.15 -26.73 -0.14 -2.19 16 14 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 15 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 16 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 19 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 23 C 0.04 0.39 6.05 -2.09 -0.01 0.37 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.28 8.12 -51.92 -0.42 -0.14 16 27 H 0.04 0.30 7.80 -51.93 -0.40 -0.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.37 7.45 -51.93 -0.39 -0.02 16 31 H 0.34 2.38 7.14 -39.29 -0.28 2.10 16 32 H 0.03 0.24 8.05 -51.93 -0.42 -0.18 16 33 H 0.07 0.59 7.44 -51.93 -0.39 0.21 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.49 7.03 -51.93 -0.37 0.12 16 36 H 0.08 0.99 7.76 -51.93 -0.40 0.58 16 37 H 0.04 0.49 7.82 -51.93 -0.41 0.08 16 38 H 0.03 0.47 7.88 -51.93 -0.41 0.06 16 39 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.89 7.25 -51.93 -0.38 0.52 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 45 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 47 H 0.04 0.43 7.72 -51.93 -0.40 0.03 16 48 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -30.86 368.06 -10.78 -41.64 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -9.66 Total: -3.80 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -0.86 Total: -19.70 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -1.13 Total: -41.30 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.86 -10.78 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719062423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.151 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds