Wall clock time and date at job start Mon Mar 30 2020 07:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 N 1.46905 * 109.47134 * 119.99806 * 2 1 3 5 5 C 1.46901 * 110.99870 * 155.00327 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 H 1.09001 * 110.28385 * 305.69611 * 6 5 4 8 8 C 1.54254 * 110.32476 * 67.82745 * 6 5 4 9 9 C 1.54381 * 105.06234 * 118.89418 * 8 6 5 10 10 N 1.48561 * 104.59119 * 23.85249 * 9 8 6 11 11 C 1.46903 * 110.99787 * 200.95866 * 10 9 8 12 12 C 1.52995 * 109.47046 * 290.12657 * 11 10 9 13 13 C 1.53006 * 109.47144 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47144 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47244 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99489 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00252 * 179.97438 * 15 14 13 18 18 N 1.31507 * 119.99636 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99928 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47172 * 89.99581 * 19 17 15 21 21 H 1.48500 * 109.47331 * 209.99737 * 19 17 15 22 22 H 1.48498 * 109.47104 * 329.99935 * 19 17 15 23 23 C 1.48717 * 104.28828 * 320.57114 * 10 9 8 24 24 H 1.08998 * 109.47174 * 299.99851 * 1 2 3 25 25 H 1.08995 * 109.47390 * 60.00523 * 1 2 3 26 26 H 1.09009 * 109.46630 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47472 * 239.99831 * 2 1 3 28 28 H 1.08999 * 109.47123 * 299.99642 * 3 2 1 29 29 H 1.08997 * 109.47624 * 60.00208 * 3 2 1 30 30 H 1.09006 * 109.47163 * 180.02562 * 3 2 1 31 31 H 1.00901 * 110.99869 * 31.05038 * 4 2 1 32 32 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 33 33 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 34 34 H 1.09003 * 110.32415 * 237.79164 * 8 6 5 35 35 H 1.09007 * 110.32795 * 359.89910 * 8 6 5 36 36 H 1.08999 * 110.41190 * 142.62829 * 9 8 6 37 37 H 1.09000 * 110.40915 * 265.07292 * 9 8 6 38 38 H 1.08996 * 109.47215 * 50.12551 * 11 10 9 39 39 H 1.09003 * 109.46969 * 170.12845 * 11 10 9 40 40 H 1.09006 * 109.47053 * 299.99966 * 12 11 10 41 41 H 1.08999 * 109.47364 * 59.99833 * 12 11 10 42 42 H 1.08995 * 109.46670 * 300.00040 * 13 12 11 43 43 H 1.09003 * 109.46903 * 60.00168 * 13 12 11 44 44 H 1.09006 * 109.47053 * 299.99988 * 14 13 12 45 45 H 1.08999 * 109.47364 * 59.99854 * 14 13 12 46 46 H 0.97007 * 119.99476 * 179.97438 * 18 17 15 47 47 H 1.08997 * 110.39311 * 280.64188 * 23 10 9 48 48 H 1.08998 * 110.50872 * 158.14943 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3671 -1.2354 0.9807 6 6 3.8417 -1.9481 2.2487 7 1 3.7749 -1.2785 3.1061 8 6 3.0031 -3.2192 2.4947 9 6 4.0154 -4.3837 2.4444 10 7 5.3217 -3.7586 2.7757 11 6 6.4375 -4.5870 2.2995 12 6 6.5175 -5.8650 3.1369 13 6 7.6793 -6.7281 2.6406 14 6 7.7596 -8.0057 3.4784 15 6 8.9043 -8.8556 2.9899 16 1 9.5132 -8.5183 2.1641 17 6 9.1741 -10.0637 3.5971 18 7 10.1727 -10.8055 3.1705 19 14 8.1204 -10.6474 5.0249 20 1 6.9809 -11.4455 4.5053 21 1 8.9401 -11.4884 5.9337 22 1 7.6025 -9.4723 5.7706 23 6 5.2912 -2.4491 2.0714 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.3793 -1.4182 1.4848 32 1 3.3431 -1.9444 0.1532 33 1 4.0523 -0.4219 0.7426 34 1 2.5259 -3.1743 3.4737 35 1 2.2520 -3.3344 1.7131 36 1 3.7588 -5.1426 3.1835 37 1 4.0446 -4.8190 1.4455 38 1 6.2761 -4.8476 1.2536 39 1 7.3699 -4.0307 2.3957 40 1 6.6790 -5.6044 4.1830 41 1 5.5851 -6.4213 3.0409 42 1 7.5173 -6.9886 1.5947 43 1 8.6118 -6.1720 2.7364 44 1 7.9218 -7.7448 4.5242 45 1 6.8271 -8.5620 3.3831 46 1 10.3628 -11.6553 3.5980 47 1 5.5211 -2.5811 1.0141 48 1 5.9930 -1.7525 2.5298 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719062423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:56 Heat of formation + Delta-G solvation = -47.380441 kcal Electronic energy + Delta-G solvation = -20291.623715 eV Core-core repulsion = 17379.105744 eV Total energy + Delta-G solvation = -2912.517972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.34415 -38.17630 -36.66990 -34.90719 -33.66473 -31.66787 -30.12765 -29.53950 -28.11724 -26.41661 -24.71851 -23.47942 -21.89250 -21.81118 -21.29048 -20.55751 -18.85051 -17.47898 -16.85656 -16.49739 -16.39410 -16.29321 -15.70821 -15.24466 -14.99588 -14.78574 -14.47798 -14.07099 -13.94040 -13.78163 -13.44220 -13.30247 -13.18812 -12.97843 -12.87492 -12.74915 -12.46453 -12.22203 -12.16067 -12.07102 -11.93694 -11.75319 -11.72717 -11.55177 -11.38843 -11.34067 -11.28908 -11.15081 -10.77074 -9.46470 -9.37626 -8.30365 -6.34423 1.34942 1.37288 1.50034 2.35940 2.91653 3.04753 3.22263 3.68770 3.76825 3.95845 4.02698 4.10146 4.14070 4.21953 4.31885 4.43761 4.47495 4.49432 4.53171 4.56271 4.66640 4.70521 4.75251 4.80230 4.82208 4.88451 4.89696 4.97737 4.98472 5.02433 5.10473 5.13493 5.15586 5.22294 5.25782 5.29012 5.37752 5.41604 5.56034 5.63357 5.67349 5.92708 6.06473 6.12371 6.28447 6.48470 6.73517 7.30243 8.86507 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.049292 B = 0.002430 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.911315 B =11520.446671 C =11749.798028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 C -0.138 4.138 4 N -0.690 5.690 5 C 0.074 3.926 6 C -0.080 4.080 7 H 0.085 0.915 8 C -0.112 4.112 9 C 0.027 3.973 10 N -0.522 5.522 11 C 0.053 3.947 12 C -0.101 4.101 13 C -0.095 4.095 14 C -0.012 4.012 15 C -0.535 4.535 16 H 0.030 0.970 17 C 0.000 4.000 18 N -0.952 5.952 19 Si 0.954 3.046 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.247 1.247 23 C 0.036 3.964 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.345 0.655 32 H 0.026 0.974 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.018 0.982 45 H 0.017 0.983 46 H 0.266 0.734 47 H 0.044 0.956 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.645 24.081 -4.697 32.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.036 4.036 3 C -0.196 4.196 4 N -0.323 5.323 5 C -0.055 4.055 6 C -0.100 4.100 7 H 0.103 0.897 8 C -0.150 4.150 9 C -0.100 4.100 10 N -0.246 5.246 11 C -0.075 4.075 12 C -0.139 4.139 13 C -0.133 4.133 14 C -0.049 4.049 15 C -0.573 4.573 16 H 0.048 0.952 17 C -0.197 4.197 18 N -0.593 5.593 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.171 1.171 23 C -0.092 4.092 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.164 0.836 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.252 24.573 -3.809 32.711 hybrid contribution 0.141 -1.704 -1.131 2.051 sum -21.112 22.869 -4.940 31.513 Atomic orbital electron populations 1.21942 0.93692 1.02266 1.02934 1.21572 0.95614 0.95542 0.90857 1.21777 1.00620 0.95262 1.01915 1.60542 1.03652 1.33394 1.34692 1.21952 0.91070 0.97283 0.95217 1.21810 0.93153 0.96468 0.98541 0.89704 1.22329 0.96975 0.92948 1.02724 1.23179 0.89679 0.97764 0.99423 1.65394 1.02274 1.03492 1.53470 1.22197 0.94803 0.94119 0.96404 1.21456 0.97947 0.94660 0.99869 1.21298 0.97640 0.95533 0.98820 1.19537 0.94970 0.94274 0.96159 1.21559 1.14654 1.04120 1.16935 0.95184 1.26089 0.96539 0.96686 1.00358 1.70079 1.31636 1.13637 1.43946 0.85598 0.78707 0.78999 0.78987 1.19049 1.20825 1.17072 1.23181 0.97698 0.91409 0.96916 0.91878 0.91113 0.92453 0.94392 0.91690 0.92456 0.93507 0.83609 0.95597 0.91018 0.90486 0.90635 0.90523 0.94288 0.94804 0.90739 0.91905 0.92327 0.93601 0.93376 0.96345 0.96499 0.92500 0.93776 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.18 71.98 0.66 -0.72 16 2 C 0.07 0.87 3.22 44.91 0.14 1.01 16 3 C -0.14 -1.60 9.41 71.98 0.68 -0.92 16 4 N -0.69 -9.12 6.31 -491.55 -3.10 -12.22 16 5 C 0.07 1.06 4.64 86.30 0.40 1.46 16 6 C -0.08 -1.29 3.30 -9.90 -0.03 -1.32 16 7 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 8 C -0.11 -1.78 6.15 31.49 0.19 -1.59 16 9 C 0.03 0.58 5.74 86.45 0.50 1.08 16 10 N -0.52 -12.48 5.37 -881.06 -4.73 -17.21 16 11 C 0.05 1.43 4.81 86.30 0.42 1.85 16 12 C -0.10 -3.24 5.27 30.59 0.16 -3.07 16 13 C -0.09 -3.79 5.15 30.59 0.16 -3.64 16 14 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 15 C -0.53 -31.98 9.66 25.60 0.25 -31.73 16 16 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 17 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 18 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 19 Si 0.95 45.45 27.47 68.60 1.88 47.33 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 23 C 0.04 0.70 6.05 86.42 0.52 1.22 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.49 8.12 -2.38 -0.02 0.47 16 27 H 0.04 0.48 7.80 -2.38 -0.02 0.46 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.60 7.45 -2.38 -0.02 0.58 16 31 H 0.34 4.09 7.14 -89.69 -0.64 3.45 16 32 H 0.03 0.39 8.05 -2.39 -0.02 0.37 16 33 H 0.07 1.05 7.44 -2.39 -0.02 1.04 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.01 7.03 -2.38 -0.02 0.99 16 36 H 0.08 1.70 7.76 -2.39 -0.02 1.68 16 37 H 0.04 0.84 7.82 -2.39 -0.02 0.82 16 38 H 0.03 0.91 7.88 -2.39 -0.02 0.89 16 39 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 40 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.06 1.82 7.25 -2.39 -0.02 1.80 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 45 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 46 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 47 H 0.04 0.84 7.72 -2.39 -0.02 0.82 16 48 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -66.25 368.06 -0.84 -67.09 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.18 Total: 12.26 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 4.63 Total: -36.39 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -7.53 Total: -90.28 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -66.25 -0.84 -67.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719062423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.706 kcal (2) G-P(sol) polarization free energy of solvation -66.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds