Wall clock time and date at job start Mon Mar 30 2020 07:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47216 * 2 1 4 4 N 1.46903 * 109.47352 * 179.97438 * 3 2 1 5 5 C 1.46892 * 111.00039 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.47056 * 180.02562 * 5 4 3 7 7 H 1.09000 * 110.64183 * 56.70034 * 6 5 4 8 8 C 1.54594 * 110.72282 * 293.54974 * 6 5 4 9 9 C 1.53997 * 105.13656 * 219.68031 * 8 6 5 10 10 N 1.47896 * 107.05852 * 358.77967 * 9 8 6 11 11 C 1.46904 * 111.00442 * 145.84371 * 10 9 8 12 12 C 1.52996 * 109.47427 * 184.28915 * 11 10 9 13 13 C 1.53003 * 109.46826 * 185.14001 * 12 11 10 14 14 C 1.53005 * 109.46539 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46627 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00500 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99919 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00361 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46925 * 90.00015 * 19 17 15 21 21 H 1.48497 * 109.47235 * 209.99725 * 19 17 15 22 22 H 1.48498 * 109.46813 * 330.00342 * 19 17 15 23 23 C 1.48535 * 105.82242 * 25.32637 * 10 9 8 24 24 H 1.08997 * 109.47294 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46725 * 60.00018 * 1 2 3 26 26 H 1.09000 * 109.47197 * 300.00546 * 1 2 3 27 27 H 1.09007 * 109.46725 * 119.99981 * 2 1 3 28 28 H 1.08997 * 109.47441 * 239.99913 * 2 1 3 29 29 H 1.08997 * 109.47436 * 300.00224 * 3 2 1 30 30 H 1.09002 * 109.46902 * 60.00112 * 3 2 1 31 31 H 1.00904 * 111.00119 * 303.96143 * 4 3 2 32 32 H 1.08999 * 109.47358 * 300.00357 * 5 4 3 33 33 H 1.08998 * 109.47465 * 60.00726 * 5 4 3 34 34 H 1.08993 * 110.31041 * 338.59874 * 8 6 5 35 35 H 1.09000 * 110.31011 * 100.67391 * 8 6 5 36 36 H 1.09007 * 109.91241 * 118.13019 * 9 8 6 37 37 H 1.09000 * 109.91749 * 239.42332 * 9 8 6 38 38 H 1.08999 * 109.46470 * 304.29022 * 11 10 9 39 39 H 1.08997 * 109.46903 * 64.28302 * 11 10 9 40 40 H 1.08998 * 109.46959 * 305.13882 * 12 11 10 41 41 H 1.08992 * 109.47080 * 65.13611 * 12 11 10 42 42 H 1.08998 * 109.47254 * 299.99701 * 13 12 11 43 43 H 1.08998 * 109.46959 * 60.00144 * 13 12 11 44 44 H 1.08998 * 109.47347 * 299.99943 * 14 13 12 45 45 H 1.08998 * 109.47134 * 60.00550 * 14 13 12 46 46 H 0.97001 * 120.00129 * 180.02562 * 18 17 15 47 47 H 1.09008 * 110.66401 * 202.35930 * 23 10 9 48 48 H 1.08998 * 110.66671 * 79.22932 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0354 2.8139 0.0000 6 6 5.5650 2.7731 0.0000 7 1 5.9342 2.2026 -0.8523 8 6 6.0964 2.1816 1.3258 9 6 7.3318 3.0306 1.6783 10 7 7.5007 4.0220 0.5939 11 6 8.0242 5.2909 1.1173 12 6 8.0844 6.3221 -0.0113 13 6 8.7478 7.6017 0.5020 14 6 8.8085 8.6327 -0.6269 15 6 9.4613 9.8933 -0.1212 16 1 9.7995 9.9531 0.9027 17 6 9.6268 10.9705 -0.9658 18 7 9.2146 10.8980 -2.2125 19 14 10.4367 12.5329 -0.3392 20 1 11.9033 12.4525 -0.5584 21 1 9.8900 13.7024 -1.0730 22 1 10.1608 12.6858 1.1119 23 6 6.1517 4.2070 0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.8704 0.9164 0.7822 32 1 3.6863 3.3367 -0.8904 33 1 3.6857 3.3378 0.8896 34 1 5.3422 2.2680 2.1079 35 1 6.3796 1.1381 1.1879 36 1 7.1721 3.5422 2.6276 37 1 8.2145 2.3941 1.7404 38 1 7.3688 5.6556 1.9082 39 1 9.0251 5.1329 1.5189 40 1 8.6653 5.9193 -0.8409 41 1 7.0738 6.5479 -0.3514 42 1 8.1668 8.0046 1.3316 43 1 9.7584 7.3758 0.8419 44 1 9.3896 8.2297 -1.4563 45 1 7.7979 8.8587 -0.9673 46 1 9.3314 11.6557 -2.8068 47 1 6.2282 4.5918 -1.0164 48 1 5.5469 4.8699 0.6194 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719066596.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:00 Heat of formation + Delta-G solvation = -35.120489 kcal Electronic energy + Delta-G solvation = -20090.590124 eV Core-core repulsion = 17178.603784 eV Total energy + Delta-G solvation = -2911.986340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.40091 -37.08749 -35.07677 -33.69996 -32.50376 -30.98937 -29.49561 -27.85047 -26.27699 -24.44547 -23.57277 -22.11569 -21.57308 -20.48023 -20.29735 -19.67999 -16.79574 -16.18352 -15.98693 -15.56610 -15.27812 -14.85065 -14.48157 -14.38986 -14.04230 -13.82809 -13.20193 -13.10098 -12.89968 -12.52163 -12.37948 -12.25024 -12.00493 -11.88342 -11.52094 -11.40214 -11.22102 -11.14962 -10.95661 -10.88017 -10.81711 -10.67359 -10.51962 -10.42477 -10.32300 -9.59458 -9.22857 -8.97670 -8.75913 -8.33996 -8.30159 -5.95610 -3.97753 3.34124 3.40015 3.43504 3.73273 4.07417 4.47609 4.49716 4.60361 4.63115 4.68294 4.77807 4.96984 5.08822 5.19777 5.19984 5.30273 5.33664 5.38736 5.39662 5.43722 5.47745 5.53188 5.63392 5.64082 5.65707 5.67985 5.79746 5.87471 5.92371 5.93337 6.05575 6.13561 6.19898 6.31644 6.52939 6.69862 6.83836 6.97540 7.00317 7.05171 7.12014 7.27552 7.73558 7.89769 8.05647 8.48519 9.09747 9.65902 11.15716 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.002404 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.782166 B =11643.833469 C =12281.934099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.056 3.944 4 N -0.690 5.690 5 C 0.067 3.933 6 C -0.090 4.090 7 H 0.092 0.908 8 C -0.126 4.126 9 C 0.035 3.965 10 N -0.517 5.517 11 C 0.048 3.952 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.041 3.959 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.027 0.973 31 H 0.339 0.661 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.016 0.984 45 H 0.014 0.986 46 H 0.260 0.740 47 H 0.086 0.914 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.915 -22.235 6.781 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.073 4.073 4 N -0.321 5.321 5 C -0.062 4.062 6 C -0.109 4.109 7 H 0.110 0.890 8 C -0.165 4.165 9 C -0.093 4.093 10 N -0.241 5.241 11 C -0.079 4.079 12 C -0.153 4.153 13 C -0.147 4.147 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.087 4.087 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.157 0.843 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.105 0.895 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.495 -22.369 5.562 26.710 hybrid contribution -0.288 1.587 1.868 2.469 sum -13.783 -20.781 7.430 26.020 Atomic orbital electron populations 1.21734 0.95546 1.01798 1.01878 1.21507 0.95620 0.96382 1.02571 1.22019 0.87654 0.97005 1.00597 1.60453 1.07242 1.14373 1.50037 1.21962 0.94211 0.89303 1.00739 1.22117 0.93556 0.96608 0.98611 0.88961 1.22461 0.97006 0.99998 0.96994 1.22846 0.98147 0.94850 0.93486 1.64810 1.22335 1.09456 1.27452 1.22414 0.99747 0.88738 0.97042 1.21675 1.01140 0.95004 0.97455 1.21600 0.98673 0.94357 1.00097 1.19089 0.96993 0.92472 0.93037 1.21293 1.38714 0.98628 0.97168 0.92785 1.25040 0.95830 0.98773 0.94943 1.69972 1.47289 1.31202 1.05082 0.86609 0.79612 0.83006 0.78850 1.20672 1.21253 1.19948 1.23230 0.89155 0.95411 1.00917 0.92520 0.92548 0.92870 0.92267 0.91037 0.90931 0.95467 0.84302 0.90601 0.95283 0.92177 0.90924 0.94067 0.90522 0.95190 0.90852 0.91569 0.92717 0.93757 0.93418 0.96579 0.96769 0.93067 0.89534 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.78 6.19 -26.73 -0.17 -0.94 16 3 C 0.06 0.42 5.69 -3.82 -0.02 0.40 16 4 N -0.69 -5.73 6.50 -113.78 -0.74 -6.47 16 5 C 0.07 0.61 5.08 -3.82 -0.02 0.59 16 6 C -0.09 -0.89 3.31 -88.76 -0.29 -1.19 16 7 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 8 C -0.13 -1.15 5.69 -25.37 -0.14 -1.29 16 9 C 0.03 0.38 6.70 -2.76 -0.02 0.37 16 10 N -0.52 -6.97 5.35 -230.45 -1.23 -8.20 16 11 C 0.05 0.72 4.84 -3.82 -0.02 0.70 16 12 C -0.11 -2.03 4.89 -26.73 -0.13 -2.16 16 13 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 19 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.04 0.51 4.81 -1.90 -0.01 0.50 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.34 2.53 7.95 -39.29 -0.31 2.22 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.27 8.08 -51.93 -0.42 -0.15 16 34 H 0.06 0.50 7.80 -51.93 -0.41 0.09 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.45 7.67 -51.93 -0.40 0.05 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.03 0.44 7.97 -51.93 -0.41 0.02 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 0.96 7.18 -51.93 -0.37 0.59 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.09 1.13 7.77 -51.92 -0.40 0.72 16 48 H 0.04 0.55 7.92 -51.93 -0.41 0.14 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -30.42 374.60 -11.62 -42.04 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -9.87 Total: -3.82 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -1.14 Total: -19.45 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -1.24 Total: -41.45 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.42 -11.62 -42.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719066596.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.916 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds