Wall clock time and date at job start Mon Mar 30 2020 07:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47216 * 2 1 4 4 N 1.46903 * 109.47352 * 179.97438 * 3 2 1 5 5 C 1.46892 * 111.00039 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.47056 * 180.02562 * 5 4 3 7 7 H 1.09000 * 110.64183 * 56.70034 * 6 5 4 8 8 C 1.54594 * 110.72282 * 293.54974 * 6 5 4 9 9 C 1.53997 * 105.13656 * 219.68031 * 8 6 5 10 10 N 1.47896 * 107.05852 * 358.77967 * 9 8 6 11 11 C 1.46904 * 111.00442 * 145.84371 * 10 9 8 12 12 C 1.52996 * 109.47427 * 184.28915 * 11 10 9 13 13 C 1.53003 * 109.46826 * 185.14001 * 12 11 10 14 14 C 1.53005 * 109.46539 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46627 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00500 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99919 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00361 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46925 * 90.00015 * 19 17 15 21 21 H 1.48497 * 109.47235 * 209.99725 * 19 17 15 22 22 H 1.48498 * 109.46813 * 330.00342 * 19 17 15 23 23 C 1.48535 * 105.82242 * 25.32637 * 10 9 8 24 24 H 1.08997 * 109.47294 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46725 * 60.00018 * 1 2 3 26 26 H 1.09000 * 109.47197 * 300.00546 * 1 2 3 27 27 H 1.09007 * 109.46725 * 119.99981 * 2 1 3 28 28 H 1.08997 * 109.47441 * 239.99913 * 2 1 3 29 29 H 1.08997 * 109.47436 * 300.00224 * 3 2 1 30 30 H 1.09002 * 109.46902 * 60.00112 * 3 2 1 31 31 H 1.00904 * 111.00119 * 303.96143 * 4 3 2 32 32 H 1.08999 * 109.47358 * 300.00357 * 5 4 3 33 33 H 1.08998 * 109.47465 * 60.00726 * 5 4 3 34 34 H 1.08993 * 110.31041 * 338.59874 * 8 6 5 35 35 H 1.09000 * 110.31011 * 100.67391 * 8 6 5 36 36 H 1.09007 * 109.91241 * 118.13019 * 9 8 6 37 37 H 1.09000 * 109.91749 * 239.42332 * 9 8 6 38 38 H 1.08999 * 109.46470 * 304.29022 * 11 10 9 39 39 H 1.08997 * 109.46903 * 64.28302 * 11 10 9 40 40 H 1.08998 * 109.46959 * 305.13882 * 12 11 10 41 41 H 1.08992 * 109.47080 * 65.13611 * 12 11 10 42 42 H 1.08998 * 109.47254 * 299.99701 * 13 12 11 43 43 H 1.08998 * 109.46959 * 60.00144 * 13 12 11 44 44 H 1.08998 * 109.47347 * 299.99943 * 14 13 12 45 45 H 1.08998 * 109.47134 * 60.00550 * 14 13 12 46 46 H 0.97001 * 120.00129 * 180.02562 * 18 17 15 47 47 H 1.09008 * 110.66401 * 202.35930 * 23 10 9 48 48 H 1.08998 * 110.66671 * 79.22932 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0354 2.8139 0.0000 6 6 5.5650 2.7731 0.0000 7 1 5.9342 2.2026 -0.8523 8 6 6.0964 2.1816 1.3258 9 6 7.3318 3.0306 1.6783 10 7 7.5007 4.0220 0.5939 11 6 8.0242 5.2909 1.1173 12 6 8.0844 6.3221 -0.0113 13 6 8.7478 7.6017 0.5020 14 6 8.8085 8.6327 -0.6269 15 6 9.4613 9.8933 -0.1212 16 1 9.7995 9.9531 0.9027 17 6 9.6268 10.9705 -0.9658 18 7 9.2146 10.8980 -2.2125 19 14 10.4367 12.5329 -0.3392 20 1 11.9033 12.4525 -0.5584 21 1 9.8900 13.7024 -1.0730 22 1 10.1608 12.6858 1.1119 23 6 6.1517 4.2070 0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.8704 0.9164 0.7822 32 1 3.6863 3.3367 -0.8904 33 1 3.6857 3.3378 0.8896 34 1 5.3422 2.2680 2.1079 35 1 6.3796 1.1381 1.1879 36 1 7.1721 3.5422 2.6276 37 1 8.2145 2.3941 1.7404 38 1 7.3688 5.6556 1.9082 39 1 9.0251 5.1329 1.5189 40 1 8.6653 5.9193 -0.8409 41 1 7.0738 6.5479 -0.3514 42 1 8.1668 8.0046 1.3316 43 1 9.7584 7.3758 0.8419 44 1 9.3896 8.2297 -1.4563 45 1 7.7979 8.8587 -0.9673 46 1 9.3314 11.6557 -2.8068 47 1 6.2282 4.5918 -1.0164 48 1 5.5469 4.8699 0.6194 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719066596.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:59 Heat of formation + Delta-G solvation = -53.943129 kcal Electronic energy + Delta-G solvation = -20091.406335 eV Core-core repulsion = 17178.603784 eV Total energy + Delta-G solvation = -2912.802551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33176 -37.84711 -36.58010 -34.98937 -33.97470 -32.22494 -30.45575 -29.36845 -27.18474 -26.02321 -24.39192 -23.37936 -22.30132 -21.88167 -21.46669 -20.76513 -18.43945 -17.50290 -16.93601 -16.61238 -16.44852 -16.18165 -15.66574 -15.37944 -14.95285 -14.66153 -14.43989 -14.40876 -13.95457 -13.76059 -13.49520 -13.40550 -13.06485 -12.93433 -12.78957 -12.67336 -12.57606 -12.24649 -12.18177 -12.09764 -11.94894 -11.72008 -11.61916 -11.52700 -11.46323 -11.35668 -11.30501 -10.98482 -10.56246 -9.42537 -9.35547 -8.20480 -6.32217 1.38832 1.40844 1.51905 2.40258 2.93725 3.11979 3.19314 3.66563 3.79444 3.95530 4.04346 4.09546 4.17612 4.21311 4.31154 4.41606 4.46679 4.51382 4.52244 4.60251 4.63258 4.70368 4.71381 4.80948 4.83353 4.85634 4.87504 4.91440 4.94486 5.07827 5.16268 5.19458 5.25428 5.26811 5.30720 5.33153 5.35377 5.42014 5.53515 5.75877 5.85449 5.96433 6.05169 6.10483 6.24938 6.46277 6.85153 7.37038 8.91414 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.002404 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.782166 B =11643.833469 C =12281.934099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.057 3.943 4 N -0.694 5.694 5 C 0.074 3.926 6 C -0.080 4.080 7 H 0.083 0.917 8 C -0.118 4.118 9 C 0.032 3.968 10 N -0.531 5.531 11 C 0.059 3.941 12 C -0.104 4.104 13 C -0.097 4.097 14 C 0.023 3.977 15 C -0.545 4.545 16 H 0.060 0.940 17 C -0.004 4.004 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.263 1.263 23 C 0.038 3.962 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.346 0.654 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.052 0.948 44 H -0.011 1.011 45 H -0.011 1.011 46 H 0.264 0.736 47 H 0.071 0.929 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.062 -22.937 8.507 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.072 4.072 4 N -0.326 5.326 5 C -0.056 4.056 6 C -0.099 4.099 7 H 0.101 0.899 8 C -0.156 4.156 9 C -0.095 4.095 10 N -0.255 5.255 11 C -0.069 4.069 12 C -0.141 4.141 13 C -0.135 4.135 14 C -0.014 4.014 15 C -0.583 4.583 16 H 0.079 0.921 17 C -0.202 4.202 18 N -0.574 5.574 19 Si 0.792 3.208 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.090 4.090 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.165 0.835 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.007 0.993 45 H 0.007 0.993 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.646 -23.095 7.301 27.801 hybrid contribution -0.259 1.783 1.280 2.210 sum -13.905 -21.312 8.581 26.854 Atomic orbital electron populations 1.21727 0.94908 1.02282 1.01924 1.21466 0.96135 0.95514 1.02519 1.22033 0.87096 0.97744 1.00350 1.60429 1.07830 1.13829 1.50514 1.21837 0.93465 0.89820 1.00443 1.21988 0.94072 0.94889 0.98995 0.89866 1.22426 0.96376 1.00249 0.96504 1.22931 0.99359 0.94457 0.92778 1.64766 1.23067 1.09044 1.28639 1.22205 1.00356 0.88721 0.95636 1.21487 1.00177 0.94322 0.98158 1.21406 0.99521 0.94404 0.98137 1.19017 0.94714 0.93615 0.94048 1.21741 1.39131 0.99776 0.97659 0.92143 1.26047 0.96320 1.02730 0.95064 1.70110 1.48333 1.32518 1.06486 0.85411 0.78636 0.78063 0.78712 1.19683 1.20651 1.18684 1.23227 0.88913 0.96919 0.99939 0.91831 0.92713 0.92632 0.91666 0.91692 0.91622 0.95261 0.83542 0.91407 0.95139 0.90904 0.89547 0.93661 0.89931 0.94598 0.90453 0.92739 0.93097 0.93159 0.92939 0.99279 0.99301 0.92766 0.91052 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.34 6.19 30.59 0.19 -1.15 16 3 C 0.06 0.78 5.69 86.30 0.49 1.27 16 4 N -0.69 -10.55 6.50 -513.89 -3.34 -13.89 16 5 C 0.07 1.26 5.08 86.31 0.44 1.70 16 6 C -0.08 -1.51 3.31 -9.59 -0.03 -1.54 16 7 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 8 C -0.12 -1.86 5.69 31.47 0.18 -1.68 16 9 C 0.03 0.65 6.70 86.45 0.58 1.23 16 10 N -0.53 -13.80 5.35 -883.01 -4.73 -18.52 16 11 C 0.06 1.70 4.84 86.30 0.42 2.11 16 12 C -0.10 -3.70 4.89 30.59 0.15 -3.55 16 13 C -0.10 -4.11 5.15 30.60 0.16 -3.96 16 14 C 0.02 1.28 4.97 29.85 0.15 1.42 16 15 C -0.55 -32.07 9.11 25.60 0.23 -31.84 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 18 N -0.93 -58.38 13.29 21.45 0.28 -58.10 16 19 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 23 C 0.04 0.93 4.81 86.65 0.42 1.34 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.35 4.44 7.95 -89.69 -0.71 3.73 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.03 0.52 8.08 -2.39 -0.02 0.50 16 34 H 0.07 1.00 7.80 -2.39 -0.02 0.98 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.04 0.88 7.67 -2.38 -0.02 0.86 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.04 1.00 7.97 -2.39 -0.02 0.98 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 1.84 7.18 -2.39 -0.02 1.82 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 44 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 46 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 47 H 0.07 1.91 7.77 -2.38 -0.02 1.89 16 48 H 0.04 1.03 7.92 -2.39 -0.02 1.01 16 Total: -1.00 -65.22 374.60 -1.06 -66.28 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.15 Total: 12.22 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 4.54 Total: -35.16 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -7.78 Total: -90.51 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.22 -1.06 -66.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719066596.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.335 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds