Wall clock time and date at job start Mon Mar 30 2020 08:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47160 * 2 1 4 4 C 1.53001 * 109.46924 * 120.00287 * 2 1 3 5 5 C 1.50700 * 109.46682 * 184.99841 * 4 2 1 6 6 H 1.07990 * 120.00237 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99240 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00330 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99344 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47284 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46922 * 120.00227 * 9 7 5 12 12 H 1.48498 * 109.47234 * 240.00094 * 9 7 5 13 13 N 1.46902 * 109.46866 * 240.00033 * 2 1 3 14 14 C 1.46903 * 110.99958 * 84.99953 * 13 2 1 15 15 C 1.52995 * 109.47213 * 179.97438 * 14 13 2 16 16 C 1.52996 * 109.47174 * 180.02562 * 15 14 13 17 17 N 1.46902 * 109.47081 * 180.02562 * 16 15 14 18 18 C 1.46849 * 110.99868 * 289.69791 * 17 16 15 19 19 C 1.53041 * 109.52506 * 174.16139 * 18 17 16 20 20 C 1.53121 * 109.27655 * 59.18038 * 19 18 17 21 21 C 1.53129 * 109.16006 * 302.34498 * 20 19 18 22 22 C 1.46848 * 111.00232 * 165.49143 * 17 16 15 23 23 H 1.08999 * 109.46209 * 65.82724 * 22 17 16 24 24 C 1.53002 * 109.46086 * 305.85452 * 22 17 16 25 25 H 1.09003 * 109.47302 * 59.99840 * 1 2 3 26 26 H 1.08996 * 109.47349 * 300.00189 * 1 2 3 27 27 H 1.08995 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47180 * 304.99942 * 4 2 1 29 29 H 1.09001 * 109.47028 * 64.99739 * 4 2 1 30 30 H 0.97007 * 120.00040 * 180.02562 * 8 7 5 31 31 H 1.00896 * 111.00171 * 321.05088 * 13 2 1 32 32 H 1.08999 * 109.47622 * 300.00561 * 14 13 2 33 33 H 1.09008 * 109.46619 * 59.99967 * 14 13 2 34 34 H 1.09004 * 109.47505 * 300.00502 * 15 14 13 35 35 H 1.08998 * 109.47043 * 60.00038 * 15 14 13 36 36 H 1.08998 * 109.47221 * 300.00052 * 16 15 14 37 37 H 1.08994 * 109.47378 * 60.00466 * 16 15 14 38 38 H 1.09004 * 109.46519 * 294.17716 * 18 17 16 39 39 H 1.09002 * 109.46582 * 54.14535 * 18 17 16 40 40 H 1.08999 * 109.50019 * 299.24030 * 19 18 17 41 41 H 1.08997 * 109.50665 * 179.12285 * 19 18 17 42 42 H 1.08995 * 109.52227 * 182.44753 * 20 19 18 43 43 H 1.09000 * 109.52439 * 62.25074 * 20 19 18 44 44 H 1.08991 * 109.50438 * 297.71625 * 21 20 19 45 45 H 1.08997 * 109.53348 * 177.61479 * 21 20 19 46 46 H 1.09000 * 109.47362 * 67.29239 * 24 22 17 47 47 H 1.08997 * 109.47235 * 187.29544 * 24 22 17 48 48 H 1.09000 * 109.46776 * 307.29455 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0788 -0.0856 0.5396 7 6 4.2302 -1.1928 2.3583 8 7 3.5763 -1.8371 3.2999 9 14 6.0920 -1.0616 2.4366 10 1 6.5837 -0.2921 1.2655 11 1 6.4870 -0.3651 3.6872 12 1 6.6853 -2.4228 2.4195 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5961 -0.5328 -3.5742 16 6 2.6620 0.4204 -4.7691 17 7 3.1547 -0.3051 -5.9477 18 6 4.5772 -0.6398 -5.8029 19 6 5.0182 -1.5172 -6.9767 20 6 4.7831 -0.7627 -8.2882 21 6 3.3031 -0.3835 -8.3915 22 6 2.9119 0.4610 -7.1767 23 1 3.5095 1.3725 -7.1606 24 6 1.4286 0.8255 -7.2656 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6054 -0.2619 2.1369 29 1 1.7515 -1.7716 1.2055 30 1 4.0606 -2.2433 4.0358 31 1 1.4495 -1.4978 -1.4101 32 1 1.0871 0.6165 -2.5525 33 1 2.7589 1.0462 -2.1182 34 1 3.5916 -0.9263 -3.3684 35 1 1.9200 -1.3566 -3.8030 36 1 1.6668 0.8142 -4.9751 37 1 3.3384 1.2439 -4.5401 38 1 5.1669 0.2769 -5.7931 39 1 4.7300 -1.1797 -4.8684 40 1 4.4384 -2.4402 -6.9789 41 1 6.0778 -1.7526 -6.8772 42 1 5.0552 -1.4004 -9.1291 43 1 5.3925 0.1410 -8.3028 44 1 2.6964 -1.2887 -8.4160 45 1 3.1368 0.1908 -9.3028 46 1 1.1800 1.5321 -6.4738 47 1 1.2234 1.2792 -8.2352 48 1 0.8257 -0.0753 -7.1511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829172213.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:32:44 Heat of formation + Delta-G solvation = -25.465143 kcal Electronic energy + Delta-G solvation = -21030.926104 eV Core-core repulsion = 18119.358451 eV Total energy + Delta-G solvation = -2911.567653 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.52692 -36.93411 -34.63442 -33.00441 -32.56202 -31.43364 -28.67493 -27.23832 -27.14087 -24.92928 -23.24934 -22.55143 -21.44391 -20.81393 -19.79101 -19.47993 -16.30674 -16.05523 -15.64772 -15.11142 -14.67592 -14.61751 -14.48377 -14.20403 -14.01934 -13.69328 -13.10631 -12.90646 -12.49433 -12.36691 -12.17997 -12.04502 -11.91519 -11.73142 -11.62989 -11.37538 -11.16624 -11.13626 -10.95284 -10.83096 -10.66539 -10.54421 -10.39841 -10.22108 -10.13498 -9.98598 -9.20949 -8.90937 -8.36921 -8.21048 -7.47664 -5.83094 -3.80180 3.41186 3.48264 3.53620 3.72202 4.56630 4.58332 4.60909 4.70979 4.81713 4.96304 5.13672 5.16499 5.19590 5.33393 5.36520 5.45291 5.53624 5.55426 5.59908 5.60310 5.66938 5.73002 5.76261 5.77559 5.81644 5.86932 5.94949 5.97590 5.98809 6.02750 6.09113 6.12767 6.22754 6.39583 6.48827 6.59018 6.68882 7.05683 7.08871 7.09858 7.63831 7.76063 8.10024 8.13226 8.25525 8.66418 9.25433 9.80769 11.29199 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.003707 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.115483 B = 7551.304763 C = 8697.026666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.032 3.968 5 C -0.485 4.485 6 H 0.058 0.942 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.664 5.664 14 C 0.062 3.938 15 C -0.111 4.111 16 C 0.052 3.948 17 N -0.532 5.532 18 C 0.052 3.948 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.111 4.111 22 C 0.080 3.920 23 H 0.036 0.964 24 C -0.149 4.149 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.256 0.744 31 H 0.330 0.670 32 H 0.015 0.985 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.030 0.970 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 4.229 -23.126 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.151 4.151 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.294 5.294 14 C -0.068 4.068 15 C -0.149 4.149 16 C -0.076 4.076 17 N -0.258 5.258 18 C -0.076 4.076 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.148 4.148 22 C -0.028 4.028 23 H 0.054 0.946 24 C -0.206 4.206 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.148 0.852 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.100 3.793 -22.845 23.253 hybrid contribution 0.555 0.887 0.034 1.047 sum -1.545 4.680 -22.811 23.338 Atomic orbital electron populations 1.22551 0.99634 1.01149 1.00501 1.21782 0.89802 0.98071 0.92371 0.91960 1.19122 0.96224 0.95407 0.89772 1.21192 0.91954 1.32576 1.06640 0.92375 1.25012 0.97956 0.96007 0.96093 1.69976 1.35030 1.37210 1.12402 0.86583 0.86578 0.77537 0.77540 1.19906 1.21457 1.21304 1.60514 1.57711 1.08604 1.02550 1.21881 0.98060 0.96013 0.90834 1.21528 1.02738 0.98191 0.92426 1.22189 1.00156 0.95261 0.90009 1.61952 1.17304 1.44721 1.01775 1.22150 0.87533 0.98451 0.99449 1.21586 1.00785 0.99157 0.93953 1.21591 0.96458 1.00073 0.97832 1.21623 0.96397 1.00325 0.96500 1.21588 0.96356 0.94406 0.90440 0.94597 1.21936 0.95433 1.01873 1.01392 0.94480 0.92574 0.93056 0.96550 0.96511 0.93449 0.85231 0.96644 0.91769 0.91038 0.91641 0.90508 0.94991 0.95200 0.89899 0.91047 0.91656 0.91959 0.92490 0.91066 0.91882 0.92462 0.92359 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 9.16 37.16 0.34 -2.75 16 2 C 0.09 1.84 2.53 -67.71 -0.17 1.67 16 3 H 0.06 1.32 7.80 -51.93 -0.40 0.91 16 4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 5 C -0.48 -13.96 8.84 -34.44 -0.30 -14.26 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.89 13.29 55.43 0.74 -27.15 16 9 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 N -0.66 -12.63 5.96 -106.72 -0.64 -13.26 16 14 C 0.06 0.97 5.48 -3.83 -0.02 0.95 16 15 C -0.11 -1.51 5.50 -26.74 -0.15 -1.66 16 16 C 0.05 0.61 4.75 -3.82 -0.02 0.59 16 17 N -0.53 -5.98 4.46 -226.69 -1.01 -6.99 16 18 C 0.05 0.58 5.30 -3.83 -0.02 0.56 16 19 C -0.12 -1.10 6.09 -26.65 -0.16 -1.26 16 20 C -0.12 -1.01 6.00 -26.60 -0.16 -1.17 16 21 C -0.11 -0.93 5.37 -26.65 -0.14 -1.08 16 22 C 0.08 0.78 2.44 -67.72 -0.17 0.61 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 24 C -0.15 -1.27 8.56 37.16 0.32 -0.96 16 25 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.33 5.91 8.47 -39.29 -0.33 5.58 16 32 H 0.02 0.23 7.44 -51.93 -0.39 -0.16 16 33 H 0.06 1.06 8.06 -51.92 -0.42 0.64 16 34 H 0.07 1.09 6.59 -51.93 -0.34 0.74 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.85 5.61 -51.93 -0.29 0.56 16 37 H 0.03 0.39 8.07 -51.93 -0.42 -0.03 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 1.00 6.42 -51.93 -0.33 0.67 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.49 6.46 -51.93 -0.34 0.16 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -30.41 365.25 -10.84 -41.25 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -9.53 Total: -0.08 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.88 Total: -16.73 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.91 Total: -47.41 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.41 -10.84 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829172213.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.789 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds