Wall clock time and date at job start Mon Mar 30 2020 08:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47160 * 2 1 4 4 C 1.53001 * 109.46924 * 120.00287 * 2 1 3 5 5 C 1.50700 * 109.46682 * 184.99841 * 4 2 1 6 6 H 1.07990 * 120.00237 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99240 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00330 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99344 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47284 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46922 * 120.00227 * 9 7 5 12 12 H 1.48498 * 109.47234 * 240.00094 * 9 7 5 13 13 N 1.46902 * 109.46866 * 240.00033 * 2 1 3 14 14 C 1.46903 * 110.99958 * 84.99953 * 13 2 1 15 15 C 1.52995 * 109.47213 * 179.97438 * 14 13 2 16 16 C 1.52996 * 109.47174 * 180.02562 * 15 14 13 17 17 N 1.46902 * 109.47081 * 180.02562 * 16 15 14 18 18 C 1.46849 * 110.99868 * 289.69791 * 17 16 15 19 19 C 1.53041 * 109.52506 * 174.16139 * 18 17 16 20 20 C 1.53121 * 109.27655 * 59.18038 * 19 18 17 21 21 C 1.53129 * 109.16006 * 302.34498 * 20 19 18 22 22 C 1.46848 * 111.00232 * 165.49143 * 17 16 15 23 23 H 1.08999 * 109.46209 * 65.82724 * 22 17 16 24 24 C 1.53002 * 109.46086 * 305.85452 * 22 17 16 25 25 H 1.09003 * 109.47302 * 59.99840 * 1 2 3 26 26 H 1.08996 * 109.47349 * 300.00189 * 1 2 3 27 27 H 1.08995 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47180 * 304.99942 * 4 2 1 29 29 H 1.09001 * 109.47028 * 64.99739 * 4 2 1 30 30 H 0.97007 * 120.00040 * 180.02562 * 8 7 5 31 31 H 1.00896 * 111.00171 * 321.05088 * 13 2 1 32 32 H 1.08999 * 109.47622 * 300.00561 * 14 13 2 33 33 H 1.09008 * 109.46619 * 59.99967 * 14 13 2 34 34 H 1.09004 * 109.47505 * 300.00502 * 15 14 13 35 35 H 1.08998 * 109.47043 * 60.00038 * 15 14 13 36 36 H 1.08998 * 109.47221 * 300.00052 * 16 15 14 37 37 H 1.08994 * 109.47378 * 60.00466 * 16 15 14 38 38 H 1.09004 * 109.46519 * 294.17716 * 18 17 16 39 39 H 1.09002 * 109.46582 * 54.14535 * 18 17 16 40 40 H 1.08999 * 109.50019 * 299.24030 * 19 18 17 41 41 H 1.08997 * 109.50665 * 179.12285 * 19 18 17 42 42 H 1.08995 * 109.52227 * 182.44753 * 20 19 18 43 43 H 1.09000 * 109.52439 * 62.25074 * 20 19 18 44 44 H 1.08991 * 109.50438 * 297.71625 * 21 20 19 45 45 H 1.08997 * 109.53348 * 177.61479 * 21 20 19 46 46 H 1.09000 * 109.47362 * 67.29239 * 24 22 17 47 47 H 1.08997 * 109.47235 * 187.29544 * 24 22 17 48 48 H 1.09000 * 109.46776 * 307.29455 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0788 -0.0856 0.5396 7 6 4.2302 -1.1928 2.3583 8 7 3.5763 -1.8371 3.2999 9 14 6.0920 -1.0616 2.4366 10 1 6.5837 -0.2921 1.2655 11 1 6.4870 -0.3651 3.6872 12 1 6.6853 -2.4228 2.4195 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5961 -0.5328 -3.5742 16 6 2.6620 0.4204 -4.7691 17 7 3.1547 -0.3051 -5.9477 18 6 4.5772 -0.6398 -5.8029 19 6 5.0182 -1.5172 -6.9767 20 6 4.7831 -0.7627 -8.2882 21 6 3.3031 -0.3835 -8.3915 22 6 2.9119 0.4610 -7.1767 23 1 3.5095 1.3725 -7.1606 24 6 1.4286 0.8255 -7.2656 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6054 -0.2619 2.1369 29 1 1.7515 -1.7716 1.2055 30 1 4.0606 -2.2433 4.0358 31 1 1.4495 -1.4978 -1.4101 32 1 1.0871 0.6165 -2.5525 33 1 2.7589 1.0462 -2.1182 34 1 3.5916 -0.9263 -3.3684 35 1 1.9200 -1.3566 -3.8030 36 1 1.6668 0.8142 -4.9751 37 1 3.3384 1.2439 -4.5401 38 1 5.1669 0.2769 -5.7931 39 1 4.7300 -1.1797 -4.8684 40 1 4.4384 -2.4402 -6.9789 41 1 6.0778 -1.7526 -6.8772 42 1 5.0552 -1.4004 -9.1291 43 1 5.3925 0.1410 -8.3028 44 1 2.6964 -1.2887 -8.4160 45 1 3.1368 0.1908 -9.3028 46 1 1.1800 1.5321 -6.4738 47 1 1.2234 1.2792 -8.2352 48 1 0.8257 -0.0753 -7.1511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829172213.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:32:43 Heat of formation + Delta-G solvation = -44.077315 kcal Electronic energy + Delta-G solvation = -21031.733189 eV Core-core repulsion = 18119.358451 eV Total energy + Delta-G solvation = -2912.374737 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.34690 -38.44482 -35.78156 -34.66787 -33.63516 -32.76092 -30.07163 -29.02408 -27.93680 -25.96201 -25.01544 -23.79414 -22.27837 -21.97516 -21.11091 -20.55265 -18.38725 -17.15724 -16.58400 -16.52962 -16.25982 -15.86792 -15.52760 -15.26073 -15.01929 -14.81188 -14.39391 -14.17664 -13.86496 -13.55860 -13.45491 -13.23385 -13.15293 -12.86732 -12.76963 -12.72193 -12.65812 -12.39068 -12.25514 -12.18119 -11.93875 -11.82796 -11.71490 -11.53959 -11.18490 -11.10140 -11.03483 -10.97426 -10.49004 -9.25151 -8.96904 -8.09534 -6.14263 1.40388 1.41340 1.54358 2.47430 2.84322 3.22967 3.49380 3.85503 3.90645 3.94042 4.11486 4.14884 4.24925 4.34395 4.37332 4.44188 4.49273 4.50682 4.55110 4.58282 4.61549 4.73630 4.74608 4.83542 4.89622 4.93579 4.98078 4.98704 5.07663 5.10463 5.22497 5.24390 5.25126 5.26134 5.31952 5.35219 5.40659 5.51408 5.52458 5.69941 5.90815 6.16559 6.25954 6.35651 6.52701 6.76829 7.00033 7.51206 9.02905 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.003707 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.115483 B = 7551.304763 C = 8697.026666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 H 0.056 0.944 4 C 0.036 3.964 5 C -0.498 4.498 6 H 0.054 0.946 7 C -0.008 4.008 8 N -0.941 5.941 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.684 5.684 14 C 0.069 3.931 15 C -0.099 4.099 16 C 0.059 3.941 17 N -0.539 5.539 18 C 0.051 3.949 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.108 4.108 22 C 0.077 3.923 23 H 0.032 0.968 24 C -0.145 4.145 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.052 0.948 28 H -0.008 1.008 29 H -0.010 1.010 30 H 0.259 0.741 31 H 0.336 0.664 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 4.954 -25.247 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 H 0.074 0.926 4 C -0.001 4.001 5 C -0.536 4.536 6 H 0.072 0.928 7 C -0.204 4.204 8 N -0.584 5.584 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.315 5.315 14 C -0.061 4.061 15 C -0.137 4.137 16 C -0.069 4.069 17 N -0.264 5.264 18 C -0.077 4.077 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.031 4.031 23 H 0.050 0.950 24 C -0.203 4.203 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.010 0.990 29 H 0.009 0.991 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.982 4.525 -24.987 25.471 hybrid contribution 0.506 0.652 0.689 1.075 sum -1.477 5.177 -24.298 24.888 Atomic orbital electron populations 1.22400 0.96675 1.01763 1.01901 1.21447 0.92119 0.96707 0.90815 0.92569 1.19015 0.95120 0.94206 0.91776 1.21510 0.93460 1.32213 1.06425 0.92772 1.25883 1.03007 0.95705 0.95785 1.70101 1.37025 1.38144 1.13086 0.85504 0.80555 0.77701 0.77875 1.19136 1.20633 1.20808 1.60347 1.58285 1.09606 1.03264 1.21851 0.98936 0.95195 0.90083 1.21384 1.01429 0.98384 0.92501 1.22080 1.00782 0.94461 0.89602 1.61966 1.17228 1.45058 1.02182 1.22143 0.87672 0.98376 0.99533 1.21572 1.01057 0.98641 0.93984 1.21590 0.96513 1.00191 0.97462 1.21624 0.96250 1.00129 0.96577 1.21703 0.97127 0.94258 0.90031 0.95009 1.21912 0.94382 1.01641 1.02343 0.91635 0.92560 0.92859 0.99001 0.99134 0.93261 0.84574 0.94610 0.92900 0.92988 0.91519 0.89256 0.95587 0.95622 0.91561 0.91669 0.90954 0.90622 0.92365 0.91557 0.90165 0.92607 0.90690 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 9.16 71.98 0.66 -4.91 16 2 C 0.10 4.07 2.53 44.92 0.11 4.18 16 3 H 0.06 2.37 7.80 -2.39 -0.02 2.35 16 4 C 0.04 1.94 4.65 29.85 0.14 2.08 16 5 C -0.50 -29.12 8.84 25.60 0.23 -28.90 16 6 H 0.05 3.15 7.74 -2.92 -0.02 3.12 16 7 C -0.01 -0.49 5.46 84.66 0.46 -0.02 16 8 N -0.94 -59.04 13.29 21.45 0.28 -58.76 16 9 Si 0.96 46.50 29.54 68.60 2.03 48.53 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 13 N -0.68 -25.79 5.96 -491.55 -2.93 -28.72 16 14 C 0.07 2.08 5.48 86.30 0.47 2.55 16 15 C -0.10 -2.63 5.50 30.59 0.17 -2.46 16 16 C 0.06 1.32 4.75 86.30 0.41 1.73 16 17 N -0.54 -11.54 4.46 -871.10 -3.88 -15.42 16 18 C 0.05 1.10 5.30 86.33 0.46 1.56 16 19 C -0.11 -2.04 6.09 30.65 0.19 -1.86 16 20 C -0.12 -1.76 6.00 30.68 0.18 -1.58 16 21 C -0.11 -1.59 5.37 30.65 0.16 -1.42 16 22 C 0.08 1.34 2.44 44.94 0.11 1.45 16 23 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 24 C -0.15 -2.16 8.56 71.98 0.62 -1.54 16 25 H 0.06 1.80 7.45 -2.39 -0.02 1.78 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 31 H 0.34 11.86 8.47 -89.70 -0.76 11.10 16 32 H 0.04 0.95 7.44 -2.39 -0.02 0.93 16 33 H 0.05 1.71 8.06 -2.38 -0.02 1.69 16 34 H 0.05 1.59 6.59 -2.38 -0.02 1.58 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.79 5.61 -2.39 -0.01 1.78 16 37 H 0.03 0.61 8.07 -2.39 -0.02 0.60 16 38 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.07 1.64 6.42 -2.39 -0.02 1.62 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.05 0.84 6.46 -2.39 -0.02 0.82 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -65.48 365.25 -0.01 -65.49 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.12 Total: 18.01 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 4.37 Total: -29.13 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -6.53 Total: -102.90 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -65.48 -0.01 -65.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829172213.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.411 kcal (2) G-P(sol) polarization free energy of solvation -65.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds