Wall clock time and date at job start Mon Mar 30 2020 06:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46957 * 2 1 4 4 C 1.50699 * 109.47171 * 239.99793 * 2 1 3 5 5 H 1.07996 * 119.99812 * 239.99515 * 4 2 1 6 6 C 1.37874 * 120.00140 * 60.00461 * 4 2 1 7 7 N 1.31515 * 119.99596 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00345 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47164 * 89.98915 * 8 6 4 10 10 H 1.48495 * 109.47585 * 209.99373 * 8 6 4 11 11 H 1.48506 * 109.46882 * 329.99668 * 8 6 4 12 12 N 1.46898 * 109.47190 * 119.99604 * 2 1 3 13 13 C 1.46901 * 111.00242 * 275.00342 * 12 2 1 14 14 C 1.53001 * 109.47282 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47019 * 179.97438 * 14 13 12 16 16 N 1.46905 * 109.47053 * 179.97438 * 15 14 13 17 17 C 1.46906 * 110.99995 * 66.04702 * 16 15 14 18 18 C 1.46897 * 111.00158 * 189.99961 * 16 15 14 19 19 C 1.53010 * 109.47130 * 295.00333 * 18 16 15 20 20 C 1.52996 * 109.46983 * 180.02562 * 19 18 16 21 21 C 1.52998 * 109.47756 * 59.99588 * 20 19 18 22 22 C 1.52997 * 109.47001 * 300.00195 * 21 20 19 23 23 C 1.53001 * 109.47291 * 175.00326 * 18 16 15 24 24 H 1.08996 * 109.47262 * 300.00012 * 1 2 3 25 25 H 1.08998 * 109.47504 * 60.00226 * 1 2 3 26 26 H 1.09002 * 109.46957 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99681 * 180.02562 * 7 6 4 28 28 H 1.00900 * 111.00026 * 38.96029 * 12 2 1 29 29 H 1.09002 * 109.47201 * 60.00103 * 13 12 2 30 30 H 1.08994 * 109.47056 * 299.99933 * 13 12 2 31 31 H 1.09002 * 109.46818 * 59.99992 * 14 13 12 32 32 H 1.08994 * 109.47122 * 300.00017 * 14 13 12 33 33 H 1.09002 * 109.47313 * 60.00318 * 15 14 13 34 34 H 1.09005 * 109.47359 * 299.99535 * 15 14 13 35 35 H 1.08992 * 109.47459 * 183.95199 * 17 16 15 36 36 H 1.09004 * 109.47040 * 303.95350 * 17 16 15 37 37 H 1.09000 * 109.47033 * 63.95302 * 17 16 15 38 38 H 1.09003 * 109.47084 * 54.99588 * 18 16 15 39 39 H 1.09003 * 109.46528 * 299.99595 * 19 18 16 40 40 H 1.08999 * 109.47201 * 59.99481 * 19 18 16 41 41 H 1.09003 * 109.47220 * 299.99560 * 20 19 18 42 42 H 1.09003 * 109.47336 * 179.97438 * 20 19 18 43 43 H 1.08995 * 109.47236 * 180.02562 * 21 20 19 44 44 H 1.09003 * 109.46779 * 59.99702 * 21 20 19 45 45 H 1.09003 * 109.47411 * 299.99672 * 22 21 20 46 46 H 1.08999 * 109.47453 * 179.97438 * 22 21 20 47 47 H 1.08998 * 109.46689 * 299.99605 * 23 18 16 48 48 H 1.08993 * 109.47141 * 59.99616 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6033 8 14 2.3226 -1.1196 -4.0079 9 1 1.3450 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5330 3.5745 15 6 2.6609 0.4203 4.7694 16 7 3.1525 -0.3055 5.9483 17 6 4.5467 -0.7293 5.7620 18 6 3.0069 0.5056 7.1644 19 6 3.9078 1.7385 7.0661 20 6 3.7566 2.5828 8.3330 21 6 4.1614 1.7512 9.5517 22 6 3.2605 0.5185 9.6499 23 6 3.4114 -0.3258 8.3834 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7083 1.1608 -3.4844 28 1 1.4496 -1.4979 1.4101 29 1 1.0870 0.6164 2.5526 30 1 2.7587 1.0463 2.1182 31 1 3.5903 -0.9270 3.3692 32 1 1.9183 -1.3563 3.8030 33 1 1.6657 0.8147 4.9749 34 1 3.3379 1.2434 4.5407 35 1 4.8632 -1.3241 6.6188 36 1 4.6263 -1.3281 4.8547 37 1 5.1851 0.1498 5.6743 38 1 1.9688 0.8216 7.2682 39 1 4.9458 1.4224 6.9623 40 1 3.6196 2.3307 6.1976 41 1 2.7186 2.8988 8.4373 42 1 4.3987 3.4609 8.2632 43 1 4.0532 2.3526 10.4542 44 1 5.1994 1.4352 9.4473 45 1 2.2225 0.8343 9.7542 46 1 3.5492 -0.0743 10.5179 47 1 2.7696 -1.2039 8.4534 48 1 4.4494 -0.6417 8.2795 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037901268.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:15 Heat of formation + Delta-G solvation = -23.436710 kcal Electronic energy + Delta-G solvation = -20902.033376 eV Core-core repulsion = 17990.553683 eV Total energy + Delta-G solvation = -2911.479694 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.72063 -36.77262 -35.68364 -33.06396 -31.32447 -30.98294 -29.24103 -27.83766 -26.08975 -25.09380 -23.53240 -22.73084 -21.27846 -20.55782 -20.03269 -19.48450 -16.45427 -16.03798 -15.50105 -15.38677 -14.76619 -14.59477 -14.48953 -14.24572 -14.03467 -13.43847 -13.28511 -12.88082 -12.58832 -12.46261 -12.35232 -11.88418 -11.79089 -11.69773 -11.40881 -11.31625 -11.12864 -10.92261 -10.85002 -10.78600 -10.72421 -10.54159 -10.48587 -10.35640 -10.13663 -10.03893 -9.74259 -8.94663 -8.32775 -8.25704 -7.16031 -5.94763 -3.97821 3.35027 3.41052 3.46063 3.82595 4.43287 4.47483 4.51568 4.69932 4.87275 4.97417 5.08425 5.16615 5.20484 5.25498 5.30251 5.36482 5.37207 5.38681 5.51090 5.53306 5.67870 5.73685 5.78908 5.79380 5.83943 5.87375 5.89486 5.96784 6.00660 6.10902 6.12790 6.20151 6.25664 6.57254 6.65031 6.74225 6.89402 7.06932 7.10338 7.15611 7.43394 7.78329 7.93432 8.32939 8.60842 8.68412 9.09764 9.67446 11.12367 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.044447 B = 0.002745 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.808232 B =10196.273743 C =10333.557624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.685 5.685 13 C 0.062 3.938 14 C -0.111 4.111 15 C 0.056 3.944 16 N -0.535 5.535 17 C 0.015 3.985 18 C 0.085 3.915 19 C -0.155 4.155 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.111 4.111 24 H 0.004 0.996 25 H 0.088 0.912 26 H 0.027 0.973 27 H 0.259 0.741 28 H 0.325 0.675 29 H 0.016 0.984 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.027 0.973 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.895 1.286 23.596 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.315 5.315 13 C -0.069 4.069 14 C -0.149 4.149 15 C -0.072 4.072 16 N -0.258 5.258 17 C -0.133 4.133 18 C -0.023 4.023 19 C -0.194 4.194 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.149 4.149 24 H 0.023 0.977 25 H 0.107 0.893 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.204 1.055 23.319 23.916 hybrid contribution -0.229 0.533 -0.819 1.003 sum 4.976 1.587 22.500 23.098 Atomic orbital electron populations 1.22426 1.00782 0.99164 1.00417 1.19165 0.89561 0.94363 0.86635 0.95033 1.21184 1.30046 1.12342 0.89663 0.91969 1.24964 0.95420 0.95229 0.99061 1.69891 1.37471 1.23267 1.23264 0.86505 0.79243 0.79222 0.82459 1.20843 1.21407 1.19886 1.60785 1.58037 1.09122 1.03533 1.21827 0.98143 0.96005 0.90877 1.21578 1.02327 0.98252 0.92789 1.22119 0.99692 0.95382 0.89985 1.62246 1.20338 1.40664 1.02519 1.22517 0.88451 0.99807 1.02560 1.21746 0.99318 0.91191 0.90089 1.22250 1.01093 0.97859 0.98199 1.21463 1.01504 0.97895 0.94448 1.21548 0.99635 0.96708 0.97863 1.21516 1.00034 0.96498 0.97588 1.21587 1.01831 0.98311 0.93196 0.97665 0.89319 0.95363 0.93127 0.85919 0.96591 0.92162 0.91370 0.91764 0.91206 0.94690 0.91563 0.90804 0.95404 0.90244 0.91631 0.91779 0.91997 0.92220 0.92200 0.92160 0.91956 0.91968 0.91210 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.94 37.16 0.33 -3.83 16 2 C 0.21 5.44 2.57 -68.87 -0.18 5.26 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.49 16 4 C -0.49 -13.98 8.84 -34.44 -0.30 -14.28 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.19 11.32 55.43 0.63 -25.56 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.69 -14.99 6.23 -107.96 -0.67 -15.66 16 13 C 0.06 1.13 5.48 -3.82 -0.02 1.11 16 14 C -0.11 -1.65 5.41 -26.73 -0.14 -1.80 16 15 C 0.06 0.72 4.40 -3.82 -0.02 0.70 16 16 N -0.54 -6.16 4.75 -234.87 -1.12 -7.28 16 17 C 0.01 0.16 8.62 60.07 0.52 0.67 16 18 C 0.09 0.83 2.23 -67.71 -0.15 0.68 16 19 C -0.16 -1.43 4.51 -26.73 -0.12 -1.55 16 20 C -0.11 -0.90 5.92 -26.73 -0.16 -1.06 16 21 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 22 C -0.12 -0.85 5.92 -26.76 -0.16 -1.01 16 23 C -0.11 -0.95 5.00 -26.75 -0.13 -1.08 16 24 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 26 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.32 6.76 8.47 -39.29 -0.33 6.43 16 29 H 0.02 0.29 7.44 -51.93 -0.39 -0.09 16 30 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 31 H 0.07 1.05 6.47 -51.93 -0.34 0.71 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 34 H 0.03 0.45 6.94 -51.93 -0.36 0.09 16 35 H 0.07 0.63 6.33 -51.93 -0.33 0.30 16 36 H 0.07 0.85 6.30 -51.93 -0.33 0.52 16 37 H 0.03 0.29 6.28 -51.93 -0.33 -0.03 16 38 H 0.08 0.81 8.03 -51.93 -0.42 0.40 16 39 H 0.07 0.63 6.39 -51.93 -0.33 0.29 16 40 H 0.06 0.65 6.75 -51.93 -0.35 0.30 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.54 6.42 -51.93 -0.33 0.21 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -28.64 354.81 -10.74 -39.38 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -9.12 Total: 2.74 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.79 Total: -15.77 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -1.16 Total: -48.50 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.64 -10.74 -39.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037901268.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.944 kcal (2) G-P(sol) polarization free energy of solvation -28.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds