Wall clock time and date at job start Mon Mar 30 2020 06:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46957 * 2 1 4 4 C 1.50699 * 109.47171 * 239.99793 * 2 1 3 5 5 H 1.07996 * 119.99812 * 239.99515 * 4 2 1 6 6 C 1.37874 * 120.00140 * 60.00461 * 4 2 1 7 7 N 1.31515 * 119.99596 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00345 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47164 * 89.98915 * 8 6 4 10 10 H 1.48495 * 109.47585 * 209.99373 * 8 6 4 11 11 H 1.48506 * 109.46882 * 329.99668 * 8 6 4 12 12 N 1.46898 * 109.47190 * 119.99604 * 2 1 3 13 13 C 1.46901 * 111.00242 * 275.00342 * 12 2 1 14 14 C 1.53001 * 109.47282 * 179.97438 * 13 12 2 15 15 C 1.52997 * 109.47019 * 179.97438 * 14 13 12 16 16 N 1.46905 * 109.47053 * 179.97438 * 15 14 13 17 17 C 1.46906 * 110.99995 * 66.04702 * 16 15 14 18 18 C 1.46897 * 111.00158 * 189.99961 * 16 15 14 19 19 C 1.53010 * 109.47130 * 295.00333 * 18 16 15 20 20 C 1.52996 * 109.46983 * 180.02562 * 19 18 16 21 21 C 1.52998 * 109.47756 * 59.99588 * 20 19 18 22 22 C 1.52997 * 109.47001 * 300.00195 * 21 20 19 23 23 C 1.53001 * 109.47291 * 175.00326 * 18 16 15 24 24 H 1.08996 * 109.47262 * 300.00012 * 1 2 3 25 25 H 1.08998 * 109.47504 * 60.00226 * 1 2 3 26 26 H 1.09002 * 109.46957 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99681 * 180.02562 * 7 6 4 28 28 H 1.00900 * 111.00026 * 38.96029 * 12 2 1 29 29 H 1.09002 * 109.47201 * 60.00103 * 13 12 2 30 30 H 1.08994 * 109.47056 * 299.99933 * 13 12 2 31 31 H 1.09002 * 109.46818 * 59.99992 * 14 13 12 32 32 H 1.08994 * 109.47122 * 300.00017 * 14 13 12 33 33 H 1.09002 * 109.47313 * 60.00318 * 15 14 13 34 34 H 1.09005 * 109.47359 * 299.99535 * 15 14 13 35 35 H 1.08992 * 109.47459 * 183.95199 * 17 16 15 36 36 H 1.09004 * 109.47040 * 303.95350 * 17 16 15 37 37 H 1.09000 * 109.47033 * 63.95302 * 17 16 15 38 38 H 1.09003 * 109.47084 * 54.99588 * 18 16 15 39 39 H 1.09003 * 109.46528 * 299.99595 * 19 18 16 40 40 H 1.08999 * 109.47201 * 59.99481 * 19 18 16 41 41 H 1.09003 * 109.47220 * 299.99560 * 20 19 18 42 42 H 1.09003 * 109.47336 * 179.97438 * 20 19 18 43 43 H 1.08995 * 109.47236 * 180.02562 * 21 20 19 44 44 H 1.09003 * 109.46779 * 59.99702 * 21 20 19 45 45 H 1.09003 * 109.47411 * 299.99672 * 22 21 20 46 46 H 1.08999 * 109.47453 * 179.97438 * 22 21 20 47 47 H 1.08998 * 109.46689 * 299.99605 * 23 18 16 48 48 H 1.08993 * 109.47141 * 59.99616 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6033 8 14 2.3226 -1.1196 -4.0079 9 1 1.3450 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5330 3.5745 15 6 2.6609 0.4203 4.7694 16 7 3.1525 -0.3055 5.9483 17 6 4.5467 -0.7293 5.7620 18 6 3.0069 0.5056 7.1644 19 6 3.9078 1.7385 7.0661 20 6 3.7566 2.5828 8.3330 21 6 4.1614 1.7512 9.5517 22 6 3.2605 0.5185 9.6499 23 6 3.4114 -0.3258 8.3834 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7083 1.1608 -3.4844 28 1 1.4496 -1.4979 1.4101 29 1 1.0870 0.6164 2.5526 30 1 2.7587 1.0463 2.1182 31 1 3.5903 -0.9270 3.3692 32 1 1.9183 -1.3563 3.8030 33 1 1.6657 0.8147 4.9749 34 1 3.3379 1.2434 4.5407 35 1 4.8632 -1.3241 6.6188 36 1 4.6263 -1.3281 4.8547 37 1 5.1851 0.1498 5.6743 38 1 1.9688 0.8216 7.2682 39 1 4.9458 1.4224 6.9623 40 1 3.6196 2.3307 6.1976 41 1 2.7186 2.8988 8.4373 42 1 4.3987 3.4609 8.2632 43 1 4.0532 2.3526 10.4542 44 1 5.1994 1.4352 9.4473 45 1 2.2225 0.8343 9.7542 46 1 3.5492 -0.0743 10.5179 47 1 2.7696 -1.2039 8.4534 48 1 4.4494 -0.6417 8.2795 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037901268.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:15 Heat of formation + Delta-G solvation = -40.616493 kcal Electronic energy + Delta-G solvation = -20902.778348 eV Core-core repulsion = 17990.553683 eV Total energy + Delta-G solvation = -2912.224665 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51450 -38.22015 -36.90541 -34.84451 -32.85369 -31.68613 -30.32933 -29.20648 -27.31310 -27.13295 -24.65350 -23.52358 -22.28066 -22.17244 -21.40197 -20.23705 -18.37170 -17.13042 -16.74115 -16.54779 -16.44455 -15.63568 -15.35474 -15.19939 -15.14014 -14.98721 -14.60045 -14.06714 -13.75642 -13.56976 -13.37329 -13.22051 -13.06631 -12.95718 -12.79022 -12.63005 -12.60722 -12.26481 -12.22270 -12.18104 -11.95093 -11.88152 -11.68219 -11.56174 -11.37041 -11.16668 -11.04826 -10.91070 -10.49240 -9.16039 -8.96229 -8.10015 -6.21543 1.43236 1.43598 1.55127 2.44099 2.90971 3.18026 3.66604 3.76892 3.85325 4.01060 4.09829 4.20941 4.27181 4.35672 4.38409 4.47445 4.52805 4.54182 4.61006 4.65597 4.68224 4.72360 4.75522 4.82867 4.84773 4.88053 4.90813 5.07966 5.09398 5.15394 5.19144 5.23192 5.24276 5.27503 5.32593 5.36163 5.44693 5.46296 5.54688 5.68765 5.82028 6.13893 6.21631 6.27246 6.65314 6.83894 6.94619 7.48654 8.95717 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.044447 B = 0.002745 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.808232 B =10196.273743 C =10333.557624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.006 3.994 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.690 5.690 13 C 0.066 3.934 14 C -0.096 4.096 15 C 0.065 3.935 16 N -0.542 5.542 17 C 0.016 3.984 18 C 0.085 3.915 19 C -0.151 4.151 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.107 4.107 24 H 0.024 0.976 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.261 0.739 28 H 0.332 0.668 29 H 0.018 0.982 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.032 0.968 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.291 0.695 24.832 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.320 5.320 13 C -0.064 4.064 14 C -0.134 4.134 15 C -0.064 4.064 16 N -0.265 5.265 17 C -0.132 4.132 18 C -0.023 4.023 19 C -0.190 4.190 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.145 4.145 24 H 0.043 0.957 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.602 0.458 24.581 25.216 hybrid contribution -0.350 0.740 -1.157 1.418 sum 5.252 1.199 23.424 24.035 Atomic orbital electron populations 1.22235 0.99969 0.99297 1.00039 1.18941 0.90093 0.92622 0.87766 0.98293 1.21472 1.30438 1.12462 0.91109 0.92718 1.25761 0.95489 0.95901 1.02016 1.70018 1.38102 1.24309 1.24015 0.85480 0.78803 0.78202 0.78661 1.19968 1.20913 1.19518 1.60659 1.57880 1.09732 1.03687 1.21840 0.98151 0.95534 0.90909 1.21396 1.01760 0.98197 0.92040 1.21955 0.99918 0.94713 0.89799 1.62234 1.20839 1.40896 1.02508 1.22518 0.88075 0.99868 1.02727 1.21792 0.99256 0.91473 0.89795 1.22193 1.00643 0.97638 0.98518 1.21461 1.01698 0.97931 0.94099 1.21538 0.99540 0.96621 0.97827 1.21505 1.00192 0.96460 0.97186 1.21552 1.01659 0.98124 0.93153 0.95701 0.91934 0.94833 0.92980 0.85101 0.96398 0.93304 0.91806 0.91593 0.91002 0.94975 0.90196 0.91757 0.95304 0.90687 0.91903 0.93044 0.91938 0.91854 0.91078 0.92137 0.91868 0.90850 0.91670 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.72 8.94 71.98 0.64 -7.07 16 2 C 0.21 11.22 2.57 44.17 0.11 11.34 16 3 H 0.00 -0.05 7.80 -2.39 -0.02 -0.07 16 4 C -0.52 -29.47 8.84 25.60 0.23 -29.24 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.35 5.30 84.65 0.45 0.80 16 7 N -0.92 -54.30 11.32 21.45 0.24 -54.06 16 8 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.69 -30.17 6.23 -495.46 -3.09 -33.26 16 13 C 0.07 2.39 5.48 86.30 0.47 2.87 16 14 C -0.10 -2.78 5.41 30.59 0.17 -2.61 16 15 C 0.06 1.60 4.40 86.30 0.38 1.97 16 16 N -0.54 -11.89 4.75 -897.00 -4.26 -16.15 16 17 C 0.02 0.32 8.62 127.69 1.10 1.42 16 18 C 0.09 1.56 2.23 44.92 0.10 1.66 16 19 C -0.15 -2.63 4.51 30.60 0.14 -2.49 16 20 C -0.11 -1.61 5.92 30.59 0.18 -1.43 16 21 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 22 C -0.12 -1.41 5.92 30.58 0.18 -1.23 16 23 C -0.11 -1.64 5.00 30.58 0.15 -1.48 16 24 H 0.02 1.08 7.45 -2.39 -0.02 1.06 16 25 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 26 H 0.03 1.57 8.13 -2.39 -0.02 1.55 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.33 13.64 8.47 -89.69 -0.76 12.88 16 29 H 0.02 0.65 7.44 -2.39 -0.02 0.63 16 30 H 0.05 1.88 8.05 -2.39 -0.02 1.86 16 31 H 0.06 1.92 6.47 -2.39 -0.02 1.91 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.75 8.00 -2.39 -0.02 1.73 16 34 H 0.03 0.81 6.94 -2.38 -0.02 0.80 16 35 H 0.08 1.39 6.33 -2.39 -0.02 1.38 16 36 H 0.06 1.43 6.30 -2.38 -0.02 1.41 16 37 H 0.03 0.58 6.28 -2.39 -0.01 0.56 16 38 H 0.07 1.45 8.03 -2.39 -0.02 1.43 16 39 H 0.06 1.13 6.39 -2.39 -0.02 1.11 16 40 H 0.05 1.02 6.75 -2.39 -0.02 1.00 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 0.97 6.42 -2.39 -0.02 0.95 16 Total: -1.00 -60.34 354.81 -0.45 -60.79 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.14 Total: 22.69 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 4.49 Total: -26.73 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -7.11 Total: -103.47 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -60.34 -0.45 -60.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037901268.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.173 kcal (2) G-P(sol) polarization free energy of solvation -60.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds