Wall clock time and date at job start Mon Mar 30 2020 07:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47312 * 2 1 4 4 C 1.46905 * 111.00016 * 291.85655 * 3 2 1 5 5 C 1.53000 * 109.46692 * 290.76584 * 4 3 2 6 6 C 1.53009 * 109.46687 * 185.11511 * 5 4 3 7 7 C 1.50698 * 109.46878 * 179.97438 * 6 5 4 8 8 H 1.08007 * 120.00183 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00142 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99864 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00156 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47324 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47296 * 119.99565 * 11 9 7 14 14 H 1.48502 * 109.46892 * 239.99757 * 11 9 7 15 15 C 1.46902 * 111.00302 * 55.80545 * 3 2 1 16 16 H 1.08995 * 109.47681 * 296.05012 * 15 3 2 17 17 C 1.52996 * 109.47127 * 176.04522 * 15 3 2 18 18 C 1.53001 * 109.47182 * 180.02562 * 17 15 3 19 19 C 1.53005 * 109.46879 * 60.00011 * 18 17 15 20 20 C 1.52996 * 109.47204 * 299.99975 * 19 18 17 21 21 C 1.53001 * 109.47182 * 60.00210 * 20 19 18 22 22 H 1.08998 * 109.47501 * 179.97438 * 21 20 19 23 23 C 1.53006 * 109.47109 * 59.99611 * 21 20 19 24 24 N 1.46901 * 109.47127 * 65.00169 * 23 21 20 25 25 H 1.09000 * 109.47676 * 182.46477 * 1 2 3 26 26 H 1.09001 * 109.47128 * 302.47001 * 1 2 3 27 27 H 1.09007 * 109.47001 * 62.46094 * 1 2 3 28 28 H 1.08993 * 109.47156 * 239.99620 * 2 1 3 29 29 H 1.08998 * 109.46440 * 119.99539 * 2 1 3 30 30 H 1.09003 * 109.47094 * 50.76273 * 4 3 2 31 31 H 1.08999 * 109.47164 * 170.76582 * 4 3 2 32 32 H 1.09003 * 109.47080 * 305.11029 * 5 4 3 33 33 H 1.08994 * 109.47429 * 65.11304 * 5 4 3 34 34 H 1.08994 * 109.46777 * 299.99683 * 6 5 4 35 35 H 1.08997 * 109.46943 * 60.00059 * 6 5 4 36 36 H 0.96991 * 120.00144 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.47255 * 300.00460 * 17 15 3 38 38 H 1.09001 * 109.47024 * 60.00558 * 17 15 3 39 39 H 1.08995 * 109.47423 * 300.00365 * 18 17 15 40 40 H 1.09001 * 109.47540 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.47013 * 180.02562 * 19 18 17 42 42 H 1.09003 * 109.47041 * 60.00139 * 19 18 17 43 43 H 1.09001 * 109.47024 * 179.97438 * 20 19 18 44 44 H 1.08990 * 109.47402 * 300.00176 * 20 19 18 45 45 H 1.08998 * 109.46905 * 185.00439 * 23 21 20 46 46 H 1.08994 * 109.46952 * 305.00327 * 23 21 20 47 47 H 1.00899 * 111.00318 * 179.97438 * 24 23 21 48 48 H 1.00899 * 111.00083 * 303.95846 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7139 2.0515 -1.2729 5 6 2.5644 1.4381 -2.3870 6 6 2.3407 2.2152 -3.6859 7 6 3.1790 1.6114 -4.7831 8 1 3.8087 0.7590 -4.5747 9 6 3.1429 2.1478 -6.0527 10 7 2.3765 3.1861 -6.3064 11 14 4.1814 1.3990 -7.4129 12 1 4.9488 0.2479 -6.8732 13 1 3.2973 0.9335 -8.5116 14 1 5.1242 2.4206 -7.9353 15 6 1.4686 2.1383 1.1344 16 1 0.3862 2.2123 1.0299 17 6 2.0760 3.5423 1.1575 18 6 1.5024 4.3267 2.3393 19 6 1.8410 3.6030 3.6441 20 6 1.2336 2.1990 3.6210 21 6 1.8072 1.4146 2.4392 22 1 1.3748 0.4141 2.4230 23 6 3.3267 1.3107 2.5853 24 7 3.6508 0.5127 3.7753 25 1 -0.3634 -1.0267 0.0442 26 1 -0.3633 0.5517 0.8670 27 1 -0.3633 0.4752 -0.9113 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 0.6576 1.9194 -1.5076 31 1 1.9372 3.1150 -1.1889 32 1 3.6175 1.4889 -2.1100 33 1 2.2768 0.3969 -2.5323 34 1 1.2878 2.1643 -3.9629 35 1 2.6284 3.2564 -3.5405 36 1 2.3509 3.5632 -7.1996 37 1 3.1585 3.4683 1.2619 38 1 1.8351 4.0577 0.2277 39 1 0.4200 4.4008 2.2352 40 1 1.9355 5.3269 2.3561 41 1 1.4321 4.1616 4.4860 42 1 2.9235 3.5290 3.7482 43 1 1.4752 1.6833 4.5504 44 1 0.1512 2.2730 3.5169 45 1 3.7447 0.8302 1.7007 46 1 3.7506 2.3092 2.6910 47 1 4.6493 0.4289 3.8937 48 1 3.2199 0.9023 4.6003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089137231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:16 Heat of formation + Delta-G solvation = -25.553301 kcal Electronic energy + Delta-G solvation = -22018.717480 eV Core-core repulsion = 19107.146004 eV Total energy + Delta-G solvation = -2911.571476 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = -0.46 seconds Orbital eigenvalues (eV) -40.15836 -36.87161 -34.11951 -33.68626 -31.61209 -30.87446 -30.03433 -28.43816 -25.93948 -24.96335 -23.31753 -22.74418 -21.83159 -20.58030 -19.31226 -18.28267 -16.57186 -16.21108 -15.97627 -15.46456 -15.07761 -14.47353 -14.39937 -14.23662 -13.79120 -13.57990 -13.17246 -13.06070 -12.79694 -12.35459 -12.22193 -12.12397 -11.91587 -11.56811 -11.46919 -11.33179 -11.10316 -10.98869 -10.82951 -10.67918 -10.51428 -10.45690 -10.27834 -10.20410 -9.82329 -9.47130 -9.24263 -8.98749 -8.65413 -8.30281 -7.87986 -5.95681 -3.97205 3.33772 3.41102 3.45879 4.13316 4.46317 4.51060 4.63804 4.74549 4.86119 5.09200 5.17973 5.28363 5.32353 5.35780 5.40339 5.41257 5.47261 5.51545 5.56454 5.62629 5.74784 5.79391 5.86688 5.93212 5.95052 5.99207 6.05085 6.09477 6.18340 6.23289 6.28606 6.35234 6.45959 6.48619 6.50625 6.78799 6.90967 7.09368 7.22005 7.35920 7.50715 7.53522 7.74465 7.90315 8.05673 8.49585 9.10455 9.66644 11.15867 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.026793 B = 0.003893 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.807903 B = 7190.237052 C = 7403.309399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.045 3.955 3 N -0.529 5.529 4 C 0.048 3.952 5 C -0.102 4.102 6 C 0.022 3.978 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.890 3.110 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.089 3.911 16 H 0.042 0.958 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.078 4.078 22 H 0.078 0.922 23 C 0.068 3.932 24 N -0.854 5.854 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.012 0.988 35 H 0.014 0.986 36 H 0.259 0.741 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.030 0.970 47 H 0.338 0.662 48 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 -1.197 21.664 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.083 4.083 3 N -0.252 5.252 4 C -0.079 4.079 5 C -0.140 4.140 6 C -0.016 4.016 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.718 3.282 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.020 4.020 16 H 0.059 0.941 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.097 4.097 22 H 0.096 0.904 23 C -0.062 4.062 24 N -0.384 5.384 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.106 0.894 46 H 0.048 0.952 47 H 0.149 0.851 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.252 -1.687 21.188 21.374 hybrid contribution -0.008 0.597 -0.659 0.889 sum -2.260 -1.090 20.529 20.681 Atomic orbital electron populations 1.22419 0.98867 1.01832 1.01919 1.22208 0.92488 0.90792 1.02805 1.62333 1.58438 1.01834 1.02605 1.22398 0.98132 0.98778 0.88564 1.21611 0.98631 0.99076 0.94662 1.19071 0.96782 0.95279 0.90436 1.21304 1.25249 1.14516 0.94318 0.92672 1.25024 0.95690 0.95067 0.98746 1.69975 1.39340 1.23275 1.21101 0.86565 0.80278 0.79229 0.82111 1.19724 1.21088 1.21060 1.21574 0.96650 0.93291 0.90477 0.94058 1.21705 1.01247 0.94559 0.98130 1.21513 1.00832 0.98602 0.94562 1.21594 1.00802 0.95948 0.97527 1.21578 1.00150 0.95496 0.98197 1.21173 0.95921 0.99163 0.93459 0.90371 1.21888 0.95357 0.95374 0.93615 1.58802 1.15807 1.57384 1.06396 0.92575 0.92810 0.92267 0.90256 0.90769 0.95209 0.91008 0.92711 0.93688 0.96958 0.96731 0.93165 0.90986 0.91350 0.92241 0.92019 0.92446 0.92025 0.91953 0.92138 0.89416 0.95228 0.85058 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 9.11 37.16 0.34 -2.11 16 2 C 0.05 0.62 5.40 -3.83 -0.02 0.60 16 3 N -0.53 -7.71 3.70 -226.65 -0.84 -8.54 16 4 C 0.05 0.84 4.69 -3.82 -0.02 0.82 16 5 C -0.10 -2.15 5.05 -26.73 -0.13 -2.28 16 6 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 11 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.09 1.10 1.04 -67.71 -0.07 1.03 16 16 H 0.04 0.54 6.42 -51.93 -0.33 0.21 16 17 C -0.12 -1.44 4.74 -26.73 -0.13 -1.56 16 18 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 19 C -0.12 -1.06 5.65 -26.73 -0.15 -1.21 16 20 C -0.12 -1.05 5.22 -26.73 -0.14 -1.19 16 21 C -0.08 -0.84 1.80 -90.61 -0.16 -1.00 16 22 H 0.08 0.92 6.16 -51.93 -0.32 0.60 16 23 C 0.07 0.74 5.43 -3.82 -0.02 0.72 16 24 N -0.85 -8.01 9.62 -10.37 -0.10 -8.11 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.65 6.02 -51.93 -0.31 0.33 16 27 H 0.06 0.84 6.56 -51.93 -0.34 0.50 16 28 H 0.08 1.20 6.40 -51.93 -0.33 0.87 16 29 H 0.07 0.96 6.47 -51.93 -0.34 0.63 16 30 H 0.03 0.53 6.26 -51.93 -0.32 0.21 16 31 H 0.07 1.27 5.71 -51.93 -0.30 0.97 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.04 0.94 6.73 -51.93 -0.35 0.59 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 0.91 6.54 -51.93 -0.34 0.57 16 38 H 0.07 0.92 6.14 -51.93 -0.32 0.60 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.55 6.32 -51.93 -0.33 0.22 16 43 H 0.06 0.51 6.68 -51.93 -0.35 0.16 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.16 7.45 -51.93 -0.39 0.77 16 46 H 0.03 0.32 4.83 -51.93 -0.25 0.07 16 47 H 0.34 2.76 9.08 -39.29 -0.36 2.41 16 48 H 0.33 2.68 7.24 -39.29 -0.28 2.39 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -29.70 343.24 -9.75 -39.45 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.48 Total: 2.41 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -1.21 Total: -20.73 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.20 Total: -43.27 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.70 -9.75 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089137231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.896 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.46 seconds