Wall clock time and date at job start Mon Mar 30 2020 07:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47312 * 2 1 4 4 C 1.46905 * 111.00016 * 291.85655 * 3 2 1 5 5 C 1.53000 * 109.46692 * 290.76584 * 4 3 2 6 6 C 1.53009 * 109.46687 * 185.11511 * 5 4 3 7 7 C 1.50698 * 109.46878 * 179.97438 * 6 5 4 8 8 H 1.08007 * 120.00183 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00142 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99864 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00156 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47324 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47296 * 119.99565 * 11 9 7 14 14 H 1.48502 * 109.46892 * 239.99757 * 11 9 7 15 15 C 1.46902 * 111.00302 * 55.80545 * 3 2 1 16 16 H 1.08995 * 109.47681 * 296.05012 * 15 3 2 17 17 C 1.52996 * 109.47127 * 176.04522 * 15 3 2 18 18 C 1.53001 * 109.47182 * 180.02562 * 17 15 3 19 19 C 1.53005 * 109.46879 * 60.00011 * 18 17 15 20 20 C 1.52996 * 109.47204 * 299.99975 * 19 18 17 21 21 C 1.53001 * 109.47182 * 60.00210 * 20 19 18 22 22 H 1.08998 * 109.47501 * 179.97438 * 21 20 19 23 23 C 1.53006 * 109.47109 * 59.99611 * 21 20 19 24 24 N 1.46901 * 109.47127 * 65.00169 * 23 21 20 25 25 H 1.09000 * 109.47676 * 182.46477 * 1 2 3 26 26 H 1.09001 * 109.47128 * 302.47001 * 1 2 3 27 27 H 1.09007 * 109.47001 * 62.46094 * 1 2 3 28 28 H 1.08993 * 109.47156 * 239.99620 * 2 1 3 29 29 H 1.08998 * 109.46440 * 119.99539 * 2 1 3 30 30 H 1.09003 * 109.47094 * 50.76273 * 4 3 2 31 31 H 1.08999 * 109.47164 * 170.76582 * 4 3 2 32 32 H 1.09003 * 109.47080 * 305.11029 * 5 4 3 33 33 H 1.08994 * 109.47429 * 65.11304 * 5 4 3 34 34 H 1.08994 * 109.46777 * 299.99683 * 6 5 4 35 35 H 1.08997 * 109.46943 * 60.00059 * 6 5 4 36 36 H 0.96991 * 120.00144 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.47255 * 300.00460 * 17 15 3 38 38 H 1.09001 * 109.47024 * 60.00558 * 17 15 3 39 39 H 1.08995 * 109.47423 * 300.00365 * 18 17 15 40 40 H 1.09001 * 109.47540 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.47013 * 180.02562 * 19 18 17 42 42 H 1.09003 * 109.47041 * 60.00139 * 19 18 17 43 43 H 1.09001 * 109.47024 * 179.97438 * 20 19 18 44 44 H 1.08990 * 109.47402 * 300.00176 * 20 19 18 45 45 H 1.08998 * 109.46905 * 185.00439 * 23 21 20 46 46 H 1.08994 * 109.46952 * 305.00327 * 23 21 20 47 47 H 1.00899 * 111.00318 * 179.97438 * 24 23 21 48 48 H 1.00899 * 111.00083 * 303.95846 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7139 2.0515 -1.2729 5 6 2.5644 1.4381 -2.3870 6 6 2.3407 2.2152 -3.6859 7 6 3.1790 1.6114 -4.7831 8 1 3.8087 0.7590 -4.5747 9 6 3.1429 2.1478 -6.0527 10 7 2.3765 3.1861 -6.3064 11 14 4.1814 1.3990 -7.4129 12 1 4.9488 0.2479 -6.8732 13 1 3.2973 0.9335 -8.5116 14 1 5.1242 2.4206 -7.9353 15 6 1.4686 2.1383 1.1344 16 1 0.3862 2.2123 1.0299 17 6 2.0760 3.5423 1.1575 18 6 1.5024 4.3267 2.3393 19 6 1.8410 3.6030 3.6441 20 6 1.2336 2.1990 3.6210 21 6 1.8072 1.4146 2.4392 22 1 1.3748 0.4141 2.4230 23 6 3.3267 1.3107 2.5853 24 7 3.6508 0.5127 3.7753 25 1 -0.3634 -1.0267 0.0442 26 1 -0.3633 0.5517 0.8670 27 1 -0.3633 0.4752 -0.9113 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 0.6576 1.9194 -1.5076 31 1 1.9372 3.1150 -1.1889 32 1 3.6175 1.4889 -2.1100 33 1 2.2768 0.3969 -2.5323 34 1 1.2878 2.1643 -3.9629 35 1 2.6284 3.2564 -3.5405 36 1 2.3509 3.5632 -7.1996 37 1 3.1585 3.4683 1.2619 38 1 1.8351 4.0577 0.2277 39 1 0.4200 4.4008 2.2352 40 1 1.9355 5.3269 2.3561 41 1 1.4321 4.1616 4.4860 42 1 2.9235 3.5290 3.7482 43 1 1.4752 1.6833 4.5504 44 1 0.1512 2.2730 3.5169 45 1 3.7447 0.8302 1.7007 46 1 3.7506 2.3092 2.6910 47 1 4.6493 0.4289 3.8937 48 1 3.2199 0.9023 4.6003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089137231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:14 Heat of formation + Delta-G solvation = -44.192997 kcal Electronic energy + Delta-G solvation = -22019.525757 eV Core-core repulsion = 19107.146004 eV Total energy + Delta-G solvation = -2912.379754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.15596 -38.02467 -35.68245 -34.93731 -33.48357 -31.86997 -30.93157 -29.84312 -27.62735 -25.89556 -24.88334 -23.85310 -22.82476 -22.09627 -20.67348 -19.18478 -18.44988 -17.59335 -16.83419 -16.64564 -16.48860 -16.04489 -15.62940 -15.30662 -14.76977 -14.50908 -14.47443 -14.44376 -14.05013 -13.76727 -13.55551 -13.15558 -13.10027 -13.02668 -12.86447 -12.68085 -12.50830 -12.35040 -12.10706 -12.04508 -11.84071 -11.83563 -11.42050 -11.38636 -11.22924 -11.05719 -10.95142 -10.68877 -10.55122 -9.42589 -9.09608 -8.20185 -6.31024 1.39316 1.39565 1.53360 2.40745 2.98464 3.12849 3.61553 3.78809 3.92540 4.01022 4.15107 4.23469 4.25447 4.32979 4.38090 4.42984 4.48821 4.51318 4.54024 4.58369 4.67407 4.72500 4.80987 4.88584 4.95935 4.97115 5.04471 5.06174 5.15245 5.16365 5.20861 5.23938 5.29105 5.33635 5.38087 5.45549 5.48084 5.54611 5.60476 5.75882 5.86741 6.18591 6.29451 6.32629 6.37304 6.71030 6.85861 7.38175 8.92000 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.026793 B = 0.003893 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.807903 B = 7190.237052 C = 7403.309399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.046 3.954 3 N -0.531 5.531 4 C 0.062 3.938 5 C -0.085 4.085 6 C 0.027 3.973 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.000 4.000 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.263 1.263 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.091 3.909 16 H 0.038 0.962 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.071 4.071 22 H 0.072 0.928 23 C 0.075 3.925 24 N -0.856 5.856 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.045 0.955 34 H -0.012 1.012 35 H -0.010 1.010 36 H 0.263 0.737 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.030 0.970 47 H 0.345 0.655 48 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -1.947 23.270 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.081 4.081 3 N -0.254 5.254 4 C -0.066 4.066 5 C -0.123 4.123 6 C -0.010 4.010 7 C -0.579 4.579 8 H 0.076 0.924 9 C -0.198 4.198 10 N -0.574 5.574 11 Si 0.789 3.211 12 H -0.187 1.187 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.017 4.017 16 H 0.056 0.944 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.090 4.090 22 H 0.090 0.910 23 C -0.055 4.055 24 N -0.387 5.387 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.006 0.994 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.158 0.842 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.919 -2.444 22.822 23.033 hybrid contribution -0.118 0.843 -1.138 1.421 sum -2.037 -1.601 21.684 21.839 Atomic orbital electron populations 1.22343 0.97870 1.02761 1.01336 1.22202 0.93285 0.90079 1.02580 1.62274 1.58979 1.02328 1.01838 1.22080 0.96901 0.98459 0.89130 1.21343 0.98962 0.98448 0.93537 1.18959 0.94823 0.94548 0.92693 1.21711 1.25793 1.14883 0.95482 0.92447 1.25976 0.96904 0.95403 1.01509 1.70102 1.40730 1.24579 1.22018 0.85404 0.78522 0.78622 0.78538 1.18676 1.20270 1.20249 1.21636 0.96274 0.93445 0.90381 0.94408 1.21683 1.00902 0.94555 0.98417 1.21498 1.00789 0.98704 0.94215 1.21567 1.00903 0.95738 0.97185 1.21563 1.00189 0.95470 0.97764 1.21101 0.95921 0.98864 0.93113 0.90957 1.21704 0.95220 0.95238 0.93380 1.58745 1.16619 1.57042 1.06283 0.91054 0.91816 0.94174 0.91927 0.89457 0.95716 0.91456 0.93230 0.93611 0.99375 0.99131 0.92787 0.91719 0.93348 0.92062 0.91420 0.90695 0.92002 0.90405 0.91859 0.91948 0.95201 0.84222 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.56 9.11 71.98 0.66 -3.90 16 2 C 0.05 1.26 5.40 86.31 0.47 1.72 16 3 N -0.53 -15.55 3.70 -870.98 -3.22 -18.77 16 4 C 0.06 2.23 4.69 86.30 0.41 2.64 16 5 C -0.08 -3.70 5.05 30.60 0.15 -3.55 16 6 C 0.03 1.50 4.97 29.85 0.15 1.65 16 7 C -0.54 -31.86 9.11 25.60 0.23 -31.62 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 10 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 11 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 12 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 15 C 0.09 2.20 1.04 44.92 0.05 2.25 16 16 H 0.04 0.96 6.42 -2.39 -0.02 0.95 16 17 C -0.12 -2.82 4.74 30.59 0.14 -2.67 16 18 C -0.11 -2.09 5.92 30.60 0.18 -1.90 16 19 C -0.12 -1.72 5.65 30.59 0.17 -1.55 16 20 C -0.11 -1.71 5.22 30.59 0.16 -1.55 16 21 C -0.07 -1.40 1.80 -10.79 -0.02 -1.42 16 22 H 0.07 1.55 6.16 -2.39 -0.01 1.53 16 23 C 0.08 1.53 5.43 86.31 0.47 2.00 16 24 N -0.86 -14.26 9.62 -186.72 -1.80 -16.06 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.44 6.02 -2.39 -0.01 1.43 16 27 H 0.04 1.14 6.56 -2.38 -0.02 1.12 16 28 H 0.06 1.91 6.40 -2.39 -0.02 1.89 16 29 H 0.09 2.17 6.47 -2.39 -0.02 2.15 16 30 H 0.02 0.91 6.26 -2.39 -0.01 0.90 16 31 H 0.07 2.49 5.71 -2.39 -0.01 2.48 16 32 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 1.97 6.73 -2.39 -0.02 1.95 16 34 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H 0.26 15.27 8.31 -92.72 -0.77 14.50 16 37 H 0.06 1.63 6.54 -2.39 -0.02 1.62 16 38 H 0.05 1.34 6.14 -2.39 -0.01 1.32 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.94 6.32 -2.39 -0.02 0.92 16 43 H 0.08 0.99 6.68 -2.39 -0.02 0.97 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 1.61 7.45 -2.39 -0.02 1.59 16 46 H 0.03 0.61 4.83 -2.39 -0.01 0.60 16 47 H 0.35 5.00 9.08 -89.69 -0.81 4.18 16 48 H 0.34 4.57 7.24 -89.69 -0.65 3.92 16 Total: -1.00 -64.37 343.24 0.45 -63.92 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.52 Total: 18.80 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 3.68 Total: -37.47 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -4.74 Total: -92.55 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -64.37 0.45 -63.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089137231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.723 kcal (2) G-P(sol) polarization free energy of solvation -64.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds