Wall clock time and date at job start Mon Mar 30 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.46964 * 111.00038 * 58.79872 * 12 2 1 14 14 C 1.53051 * 109.36420 * 176.81075 * 13 12 2 15 15 N 1.46960 * 109.36247 * 58.39937 * 14 13 12 16 16 C 1.46905 * 110.99438 * 176.81087 * 15 14 13 17 17 C 1.53003 * 109.47123 * 313.80010 * 16 15 14 18 18 C 1.53001 * 109.46588 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47089 * 60.00406 * 18 17 16 20 20 C 1.53003 * 109.46588 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47350 * 300.00087 * 18 17 16 22 22 C 1.46951 * 110.88116 * 300.67971 * 15 14 13 23 23 C 1.46951 * 111.00033 * 295.00057 * 12 2 1 24 24 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 25 25 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 26 26 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.48393 * 296.78047 * 13 12 2 29 29 H 1.08999 * 109.48636 * 56.84050 * 13 12 2 30 30 H 1.09001 * 109.48645 * 298.43554 * 14 13 12 31 31 H 1.08997 * 109.48506 * 178.36857 * 14 13 12 32 32 H 1.08995 * 109.46943 * 73.80584 * 16 15 14 33 33 H 1.09001 * 109.46747 * 193.80535 * 16 15 14 34 34 H 1.08999 * 109.47250 * 299.99886 * 17 16 15 35 35 H 1.09001 * 109.46880 * 60.00607 * 17 16 15 36 36 H 1.08995 * 109.47259 * 60.00034 * 19 18 17 37 37 H 1.09006 * 109.47135 * 179.97438 * 19 18 17 38 38 H 1.08994 * 109.46886 * 299.99669 * 19 18 17 39 39 H 1.09001 * 109.46880 * 60.00401 * 20 18 17 40 40 H 1.09006 * 109.46539 * 179.97438 * 20 18 17 41 41 H 1.08999 * 109.47250 * 299.99680 * 20 18 17 42 42 H 1.08994 * 109.47136 * 60.00018 * 21 18 17 43 43 H 1.08996 * 109.46975 * 180.02562 * 21 18 17 44 44 H 1.08999 * 109.46923 * 300.00122 * 21 18 17 45 45 H 1.08994 * 109.48852 * 299.34889 * 22 15 14 46 46 H 1.09007 * 109.48569 * 179.28925 * 22 15 14 47 47 H 1.09002 * 109.49323 * 303.15469 * 23 12 2 48 48 H 1.09002 * 109.49228 * 63.20132 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 7 2.0196 -0.6925 1.1995 13 6 1.5250 -2.0755 1.2480 14 6 2.1199 -2.7848 2.4668 15 7 1.7488 -2.0527 3.6859 16 6 2.2384 -2.7452 4.8854 17 6 1.9165 -4.2372 4.7799 18 6 2.4259 -4.9583 6.0296 19 6 1.7432 -4.3755 7.2686 20 6 2.1045 -6.4504 5.9239 21 6 3.9398 -4.7701 6.1455 22 6 2.2434 -0.6697 3.6373 23 6 1.6485 0.0395 2.4185 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 0.7043 1.1577 -3.4845 28 1 0.4378 -2.0703 1.3250 29 1 1.8231 -2.6003 0.3404 30 1 3.2058 -2.8139 2.3765 31 1 1.7317 -3.8018 2.5210 32 1 3.3170 -2.6110 4.9675 33 1 1.7523 -2.3301 5.7683 34 1 0.8379 -4.3713 4.6979 35 1 2.4026 -4.6523 3.8970 36 1 0.6647 -4.5097 7.1860 37 1 2.1058 -4.8895 8.1588 38 1 1.9725 -3.3126 7.3436 39 1 2.5913 -6.8653 5.0412 40 1 2.4679 -6.9642 6.8139 41 1 1.0260 -6.5849 5.8411 42 1 4.1691 -3.7072 6.2205 43 1 4.3027 -5.2842 7.0354 44 1 4.4262 -5.1853 5.2628 45 1 3.3306 -0.6749 3.5604 46 1 1.9452 -0.1449 4.5450 47 1 2.0366 1.0567 2.3644 48 1 0.5626 0.0690 2.5087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097079329.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:10 Heat of formation + Delta-G solvation = -4.826600 kcal Electronic energy + Delta-G solvation = -21863.368152 eV Core-core repulsion = 18952.695454 eV Total energy + Delta-G solvation = -2910.672699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.25785 -37.79363 -35.38400 -32.62773 -30.54884 -29.91623 -27.97857 -27.44604 -27.41358 -25.37325 -24.86815 -23.10493 -21.89652 -20.45958 -18.65687 -18.53061 -16.16957 -16.02895 -15.11311 -14.95387 -14.67491 -14.39000 -14.09664 -14.05054 -13.75023 -13.71754 -13.07003 -12.83738 -12.56646 -12.43470 -12.05864 -11.85020 -11.82315 -11.70197 -11.45209 -11.18980 -11.04237 -10.84523 -10.76626 -10.67629 -10.56589 -10.53831 -10.40044 -10.27061 -10.10730 -9.88605 -9.53851 -8.81588 -8.35251 -7.98528 -7.06124 -5.97825 -4.01707 3.34176 3.38374 3.41238 4.15081 4.43709 4.64804 4.67984 4.73408 5.04835 5.17769 5.28720 5.33964 5.37871 5.45515 5.48616 5.52141 5.62028 5.62946 5.67715 5.73807 5.77996 5.84390 5.90114 5.92994 5.95205 6.01825 6.04817 6.11239 6.19704 6.27674 6.31801 6.34682 6.52881 6.70105 6.73217 6.89558 6.93807 7.19866 7.37071 7.39610 7.59048 7.78098 7.87517 8.17969 8.44426 8.65538 9.04055 9.63221 11.09179 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.030121 B = 0.003942 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.364214 B = 7101.900349 C = 7616.041393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.038 0.962 4 C -0.500 4.500 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.533 5.533 13 C 0.064 3.936 14 C 0.053 3.947 15 N -0.539 5.539 16 C 0.054 3.946 17 C -0.112 4.112 18 C -0.069 4.069 19 C -0.142 4.142 20 C -0.140 4.140 21 C -0.144 4.144 22 C 0.062 3.938 23 C 0.055 3.945 24 H 0.008 0.992 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.034 0.966 29 H 0.084 0.916 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.036 0.964 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 -9.627 17.130 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.539 4.539 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.257 5.257 13 C -0.064 4.064 14 C -0.075 4.075 15 N -0.265 5.265 16 C -0.074 4.074 17 C -0.149 4.149 18 C -0.070 4.070 19 C -0.200 4.200 20 C -0.198 4.198 21 C -0.201 4.201 22 C -0.066 4.066 23 C -0.074 4.074 24 H 0.027 0.973 25 H 0.105 0.895 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.995 -9.494 16.974 19.551 hybrid contribution 0.260 -0.354 -0.870 0.975 sum 2.255 -9.848 16.104 19.011 Atomic orbital electron populations 1.22377 1.00804 0.99331 1.00431 1.19269 0.89807 0.94438 0.85958 0.94448 1.21082 1.30434 1.12591 0.89767 0.92100 1.24926 0.95245 0.95118 0.98958 1.69880 1.36869 1.23213 1.23435 0.86598 0.79211 0.79611 0.82187 1.20359 1.21412 1.20286 1.62502 1.59306 1.01633 1.02307 1.22018 0.97185 0.90850 0.96373 1.22347 0.98290 0.97119 0.89700 1.62244 1.59621 1.02430 1.02156 1.22237 0.97642 0.93918 0.93595 1.21790 1.01735 0.94406 0.97012 1.20541 0.95549 0.95382 0.95524 1.21922 1.00402 1.00906 0.96728 1.21861 1.01465 0.94949 1.01491 1.21937 0.94921 1.01838 1.01420 1.22138 0.97499 0.88790 0.98202 1.22050 0.98124 0.97035 0.90224 0.97297 0.89477 0.95172 0.92990 0.94833 0.89778 0.94764 0.90890 0.94987 0.91059 0.91183 0.91478 0.92623 0.93075 0.92351 0.92695 0.92897 0.92652 0.92375 0.92999 0.92728 0.94610 0.91542 0.91398 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.27 37.16 0.31 -3.90 16 2 C 0.21 5.39 2.35 -68.86 -0.16 5.23 16 3 H 0.04 1.05 8.11 -51.93 -0.42 0.63 16 4 C -0.50 -13.75 7.89 -34.44 -0.27 -14.02 16 5 H 0.06 1.67 6.78 -52.49 -0.36 1.31 16 6 C 0.06 1.62 5.31 -17.82 -0.09 1.53 16 7 N -0.89 -25.66 11.31 55.43 0.63 -25.03 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 N -0.53 -11.70 4.69 -227.87 -1.07 -12.77 16 13 C 0.06 1.30 4.86 -3.76 -0.02 1.28 16 14 C 0.05 0.88 4.93 -3.76 -0.02 0.86 16 15 N -0.54 -8.33 4.86 -234.46 -1.14 -9.47 16 16 C 0.05 0.66 4.57 -3.82 -0.02 0.64 16 17 C -0.11 -1.22 3.53 -26.73 -0.09 -1.32 16 18 C -0.07 -0.63 0.80 -154.51 -0.12 -0.75 16 19 C -0.14 -1.20 8.12 37.16 0.30 -0.90 16 20 C -0.14 -1.17 8.47 37.16 0.31 -0.85 16 21 C -0.14 -1.28 8.12 37.16 0.30 -0.98 16 22 C 0.06 0.99 5.58 -3.77 -0.02 0.97 16 23 C 0.05 1.04 5.25 -3.77 -0.02 1.02 16 24 H 0.01 0.19 6.59 -51.93 -0.34 -0.15 16 25 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 26 H 0.03 0.73 6.45 -51.93 -0.34 0.39 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.03 0.71 6.46 -51.93 -0.34 0.37 16 29 H 0.08 1.82 6.45 -51.93 -0.34 1.48 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.08 5.99 -51.93 -0.31 0.77 16 32 H 0.03 0.40 6.37 -51.93 -0.33 0.07 16 33 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.78 6.26 -51.93 -0.33 0.45 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 47 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 48 H 0.04 0.70 6.60 -51.93 -0.34 0.35 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -28.10 347.18 -9.94 -38.04 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.96 Total: -1.21 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 0.38 Total: -11.20 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -1.58 Total: -47.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.10 -9.94 -38.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097079329.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.213 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds