Wall clock time and date at job start Mon Mar 30 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.46964 * 111.00038 * 58.79872 * 12 2 1 14 14 C 1.53051 * 109.36420 * 176.81075 * 13 12 2 15 15 N 1.46960 * 109.36247 * 58.39937 * 14 13 12 16 16 C 1.46905 * 110.99438 * 176.81087 * 15 14 13 17 17 C 1.53003 * 109.47123 * 313.80010 * 16 15 14 18 18 C 1.53001 * 109.46588 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.47089 * 60.00406 * 18 17 16 20 20 C 1.53003 * 109.46588 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47350 * 300.00087 * 18 17 16 22 22 C 1.46951 * 110.88116 * 300.67971 * 15 14 13 23 23 C 1.46951 * 111.00033 * 295.00057 * 12 2 1 24 24 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 25 25 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 26 26 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.48393 * 296.78047 * 13 12 2 29 29 H 1.08999 * 109.48636 * 56.84050 * 13 12 2 30 30 H 1.09001 * 109.48645 * 298.43554 * 14 13 12 31 31 H 1.08997 * 109.48506 * 178.36857 * 14 13 12 32 32 H 1.08995 * 109.46943 * 73.80584 * 16 15 14 33 33 H 1.09001 * 109.46747 * 193.80535 * 16 15 14 34 34 H 1.08999 * 109.47250 * 299.99886 * 17 16 15 35 35 H 1.09001 * 109.46880 * 60.00607 * 17 16 15 36 36 H 1.08995 * 109.47259 * 60.00034 * 19 18 17 37 37 H 1.09006 * 109.47135 * 179.97438 * 19 18 17 38 38 H 1.08994 * 109.46886 * 299.99669 * 19 18 17 39 39 H 1.09001 * 109.46880 * 60.00401 * 20 18 17 40 40 H 1.09006 * 109.46539 * 179.97438 * 20 18 17 41 41 H 1.08999 * 109.47250 * 299.99680 * 20 18 17 42 42 H 1.08994 * 109.47136 * 60.00018 * 21 18 17 43 43 H 1.08996 * 109.46975 * 180.02562 * 21 18 17 44 44 H 1.08999 * 109.46923 * 300.00122 * 21 18 17 45 45 H 1.08994 * 109.48852 * 299.34889 * 22 15 14 46 46 H 1.09007 * 109.48569 * 179.28925 * 22 15 14 47 47 H 1.09002 * 109.49323 * 303.15469 * 23 12 2 48 48 H 1.09002 * 109.49228 * 63.20132 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 7 2.0196 -0.6925 1.1995 13 6 1.5250 -2.0755 1.2480 14 6 2.1199 -2.7848 2.4668 15 7 1.7488 -2.0527 3.6859 16 6 2.2384 -2.7452 4.8854 17 6 1.9165 -4.2372 4.7799 18 6 2.4259 -4.9583 6.0296 19 6 1.7432 -4.3755 7.2686 20 6 2.1045 -6.4504 5.9239 21 6 3.9398 -4.7701 6.1455 22 6 2.2434 -0.6697 3.6373 23 6 1.6485 0.0395 2.4185 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 0.7043 1.1577 -3.4845 28 1 0.4378 -2.0703 1.3250 29 1 1.8231 -2.6003 0.3404 30 1 3.2058 -2.8139 2.3765 31 1 1.7317 -3.8018 2.5210 32 1 3.3170 -2.6110 4.9675 33 1 1.7523 -2.3301 5.7683 34 1 0.8379 -4.3713 4.6979 35 1 2.4026 -4.6523 3.8970 36 1 0.6647 -4.5097 7.1860 37 1 2.1058 -4.8895 8.1588 38 1 1.9725 -3.3126 7.3436 39 1 2.5913 -6.8653 5.0412 40 1 2.4679 -6.9642 6.8139 41 1 1.0260 -6.5849 5.8411 42 1 4.1691 -3.7072 6.2205 43 1 4.3027 -5.2842 7.0354 44 1 4.4262 -5.1853 5.2628 45 1 3.3306 -0.6749 3.5604 46 1 1.9452 -0.1449 4.5450 47 1 2.0366 1.0567 2.3644 48 1 0.5626 0.0690 2.5087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097079329.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:09 Heat of formation + Delta-G solvation = -21.959932 kcal Electronic energy + Delta-G solvation = -21864.111109 eV Core-core repulsion = 18952.695454 eV Total energy + Delta-G solvation = -2911.415656 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.55803 -38.90290 -36.85251 -34.54326 -31.99721 -31.46202 -29.39677 -28.11612 -28.09434 -27.37968 -26.39567 -24.57549 -23.16071 -22.09415 -20.19747 -19.38020 -18.20828 -17.41991 -16.58606 -16.14812 -15.87898 -15.80241 -15.48265 -15.32670 -15.03010 -14.80730 -14.38085 -14.24416 -14.10491 -13.59223 -13.29184 -13.04947 -12.93656 -12.79733 -12.67983 -12.63700 -12.52973 -12.43561 -12.32728 -12.04855 -11.99082 -11.95878 -11.74232 -11.42864 -11.32746 -11.28629 -11.09404 -10.84944 -10.48460 -9.22533 -8.83771 -8.10412 -6.21726 1.42888 1.44598 1.52138 2.43192 2.98298 3.18477 3.38773 3.83716 3.94656 3.96195 4.09519 4.25151 4.26274 4.38133 4.46039 4.52414 4.58180 4.65590 4.69045 4.74090 4.78471 4.83073 4.85145 4.89021 4.90899 4.96663 5.03480 5.05169 5.09252 5.11525 5.15334 5.16672 5.21272 5.25375 5.26565 5.43836 5.53240 5.56296 5.57654 5.70452 5.79257 6.10848 6.20841 6.22171 6.50481 6.75778 6.91676 7.47557 8.95729 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.030121 B = 0.003942 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.364214 B = 7101.900349 C = 7616.041393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.216 3.784 3 H 0.004 0.996 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.542 5.542 13 C 0.068 3.932 14 C 0.066 3.934 15 N -0.547 5.547 16 C 0.058 3.942 17 C -0.107 4.107 18 C -0.066 4.066 19 C -0.141 4.141 20 C -0.139 4.139 21 C -0.143 4.143 22 C 0.070 3.930 23 C 0.054 3.946 24 H 0.023 0.977 25 H 0.061 0.939 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.022 0.978 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.093 0.907 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.033 0.967 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -11.013 18.603 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.108 3.892 3 H 0.022 0.978 4 C -0.554 4.554 5 H 0.074 0.926 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.266 5.266 13 C -0.060 4.060 14 C -0.062 4.062 15 N -0.273 5.273 16 C -0.069 4.069 17 C -0.145 4.145 18 C -0.067 4.067 19 C -0.198 4.198 20 C -0.197 4.197 21 C -0.200 4.200 22 C -0.058 4.058 23 C -0.075 4.075 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.112 0.888 47 H 0.084 0.916 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.488 -10.892 18.473 21.589 hybrid contribution 0.099 0.098 -1.272 1.280 sum 2.587 -10.793 17.201 20.471 Atomic orbital electron populations 1.22159 1.00410 0.98930 0.99808 1.19031 0.89957 0.92864 0.87306 0.97761 1.21340 1.30556 1.12627 0.90926 0.92561 1.25706 0.95369 0.95776 1.01862 1.70012 1.37698 1.24367 1.24069 0.85590 0.78692 0.78714 0.78500 1.19547 1.20984 1.19825 1.62416 1.59459 1.02491 1.02237 1.21970 0.96561 0.89964 0.97532 1.22181 0.97618 0.97621 0.88752 1.62243 1.60000 1.02331 1.02693 1.22295 0.97854 0.94468 0.92316 1.21745 1.01326 0.93626 0.97816 1.20518 0.95689 0.95653 0.94842 1.21909 1.00286 1.00892 0.96736 1.21851 1.01503 0.94435 1.01890 1.21928 0.94673 1.01696 1.01730 1.22065 0.97039 0.89174 0.97537 1.22120 0.97800 0.97278 0.90263 0.95853 0.92005 0.95293 0.92963 0.96008 0.91741 0.95301 0.88936 0.94669 0.89856 0.91756 0.92219 0.92737 0.92048 0.92466 0.92980 0.91869 0.92652 0.92736 0.91898 0.93255 0.94878 0.88832 0.91555 0.95530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.77 8.27 71.98 0.60 -7.18 16 2 C 0.22 11.29 2.35 44.17 0.10 11.39 16 3 H 0.00 0.26 8.11 -2.39 -0.02 0.24 16 4 C -0.52 -28.91 7.89 25.60 0.20 -28.71 16 5 H 0.06 3.14 6.78 -2.92 -0.02 3.12 16 6 C 0.01 0.63 5.31 84.66 0.45 1.08 16 7 N -0.92 -53.81 11.31 21.45 0.24 -53.57 16 8 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 N -0.54 -24.02 4.69 -874.85 -4.10 -28.13 16 13 C 0.07 2.76 4.86 86.31 0.42 3.18 16 14 C 0.07 2.12 4.93 86.31 0.43 2.54 16 15 N -0.55 -15.87 4.86 -895.71 -4.35 -20.23 16 16 C 0.06 1.28 4.57 86.30 0.39 1.67 16 17 C -0.11 -2.12 3.53 30.60 0.11 -2.02 16 18 C -0.07 -1.05 0.80 -52.18 -0.04 -1.09 16 19 C -0.14 -2.01 8.12 71.98 0.58 -1.43 16 20 C -0.14 -2.01 8.47 71.98 0.61 -1.40 16 21 C -0.14 -2.21 8.12 71.98 0.58 -1.62 16 22 C 0.07 2.10 5.58 86.31 0.48 2.59 16 23 C 0.05 2.03 5.25 86.31 0.45 2.48 16 24 H 0.02 1.06 6.59 -2.39 -0.02 1.04 16 25 H 0.06 3.44 6.06 -2.38 -0.01 3.43 16 26 H 0.03 1.42 6.45 -2.39 -0.02 1.40 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.76 16 28 H 0.02 0.93 6.46 -2.39 -0.02 0.91 16 29 H 0.06 2.83 6.45 -2.39 -0.02 2.81 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 2.60 5.99 -2.39 -0.01 2.58 16 32 H 0.04 0.78 6.37 -2.39 -0.02 0.77 16 33 H 0.08 1.69 6.43 -2.39 -0.02 1.67 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.27 6.26 -2.39 -0.01 1.25 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.06 0.83 6.43 -2.39 -0.02 0.81 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.05 0.88 6.43 -2.39 -0.02 0.86 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 47 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 48 H 0.03 1.04 6.60 -2.39 -0.02 1.03 16 Total: -1.00 -60.21 347.18 0.08 -60.13 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.90 Total: 14.12 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 5.37 Total: -18.51 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -8.21 Total: -101.92 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -60.21 0.08 -60.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097079329.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.171 kcal (2) G-P(sol) polarization free energy of solvation -60.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds