Wall clock time and date at job start Mon Mar 30 2020 07:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46905 * 109.46579 * 185.00135 * 4 2 1 6 6 C 1.46902 * 110.99478 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46983 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47275 * 300.00056 * 7 6 5 9 9 C 1.53004 * 109.46967 * 59.99680 * 7 6 5 10 10 C 1.53001 * 109.47227 * 179.97438 * 7 6 5 11 11 C 1.50701 * 109.47175 * 180.02562 * 10 7 6 12 12 H 1.08004 * 119.99967 * 359.97438 * 11 10 7 13 13 C 1.37877 * 120.00028 * 180.02562 * 11 10 7 14 14 N 1.31510 * 119.99872 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99957 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46965 * 59.99927 * 15 13 11 17 17 H 1.48498 * 109.47131 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47256 * 300.00083 * 15 13 11 19 19 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 20 20 C 1.48532 * 111.00167 * 177.60186 * 19 2 1 21 21 C 1.54928 * 103.22784 * 159.72352 * 20 19 2 22 22 C 1.54594 * 102.92393 * 322.58593 * 21 20 19 23 23 C 1.47900 * 111.00267 * 295.00250 * 19 2 1 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 28 28 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 29 29 H 1.00899 * 110.99764 * 303.94896 * 5 4 2 30 30 H 1.09003 * 109.46837 * 299.99264 * 6 5 4 31 31 H 1.08993 * 109.47729 * 59.99816 * 6 5 4 32 32 H 1.08998 * 109.47568 * 59.99625 * 8 7 6 33 33 H 1.09003 * 109.47313 * 180.02562 * 8 7 6 34 34 H 1.09005 * 109.47100 * 299.99812 * 8 7 6 35 35 H 1.09003 * 109.47426 * 60.00072 * 9 7 6 36 36 H 1.08999 * 109.47010 * 180.02562 * 9 7 6 37 37 H 1.08995 * 109.47259 * 300.00256 * 9 7 6 38 38 H 1.09003 * 109.46960 * 299.99801 * 10 7 6 39 39 H 1.08993 * 109.47363 * 60.00205 * 10 7 6 40 40 H 0.97008 * 119.99843 * 180.02562 * 14 13 11 41 41 H 1.08999 * 110.66679 * 278.16073 * 20 19 2 42 42 H 1.09004 * 110.66209 * 41.28817 * 20 19 2 43 43 H 1.09001 * 110.72421 * 204.23231 * 21 20 19 44 44 H 1.08998 * 110.88112 * 81.01955 * 21 20 19 45 45 H 1.08999 * 110.31256 * 263.04796 * 22 21 20 46 46 H 1.09000 * 110.30998 * 140.87304 * 22 21 20 47 47 H 1.09002 * 109.91231 * 333.50938 * 23 19 2 48 48 H 1.08997 * 109.92026 * 94.79910 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.0303 -1.5148 -2.3768 7 6 5.5546 -1.6047 -2.2799 8 6 6.1448 -0.1952 -2.2041 9 6 5.9404 -2.3874 -1.0231 10 6 6.1027 -2.3219 -3.5152 11 6 7.6040 -2.4110 -3.4195 12 1 8.1161 -1.9970 -2.5634 13 6 8.3240 -3.0201 -4.4253 14 7 7.7006 -3.5237 -5.4680 15 14 10.1850 -3.1298 -4.3070 16 1 10.5595 -3.8895 -3.0872 17 1 10.7170 -3.8261 -5.5059 18 1 10.7579 -1.7618 -4.2335 19 7 2.0197 -0.6925 1.1994 20 6 3.5033 -0.7628 1.2051 21 6 3.8407 -1.0123 2.6964 22 6 2.7915 -0.1517 3.4370 23 6 1.6462 0.0441 2.4264 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6053 -1.7197 -1.2952 28 1 1.7516 -0.1583 -2.1370 29 1 3.9279 0.0826 -1.0824 30 1 3.6095 -2.5189 -2.4309 31 1 3.7558 -0.9570 -3.2721 32 1 5.7543 0.3155 -1.3239 33 1 7.2308 -0.2592 -2.1356 34 1 5.8699 0.3624 -3.0995 35 1 5.5199 -3.3916 -1.0770 36 1 7.0263 -2.4510 -0.9539 37 1 5.5499 -1.8768 -0.1429 38 1 5.6822 -3.3262 -3.5687 39 1 5.8279 -1.7647 -4.4108 40 1 8.2071 -3.9525 -6.1755 41 1 3.8516 -1.5910 0.5880 42 1 3.9343 0.1791 0.8655 43 1 4.8504 -0.6715 2.9258 44 1 3.7239 -2.0659 2.9502 45 1 3.2198 0.8115 3.7144 46 1 2.4297 -0.6748 4.3221 47 1 1.5266 1.1039 2.2013 48 1 0.7188 -0.3587 2.8335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135145924.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:02 Heat of formation + Delta-G solvation = -3.078436 kcal Electronic energy + Delta-G solvation = -22007.858547 eV Core-core repulsion = 19097.261655 eV Total energy + Delta-G solvation = -2910.596893 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.43121 -37.42312 -35.07483 -33.00036 -31.82453 -29.18467 -28.59601 -27.09297 -26.35824 -26.02733 -24.25541 -22.31903 -21.54226 -20.68952 -20.12807 -17.77988 -16.55161 -16.21782 -15.85599 -15.08948 -14.81621 -14.37270 -14.08537 -13.72512 -13.62214 -13.03321 -12.94514 -12.80874 -12.53931 -12.35240 -12.08804 -11.97804 -11.80982 -11.38971 -11.26887 -11.09986 -10.97794 -10.84902 -10.80316 -10.75809 -10.60235 -10.49699 -10.42871 -10.17498 -10.10195 -9.64166 -8.99240 -8.81446 -8.29868 -8.29176 -7.82332 -5.94516 -3.94658 3.35648 3.40393 3.42486 4.04354 4.40632 4.52691 4.70092 4.76570 4.94347 5.03994 5.18871 5.35765 5.41250 5.43527 5.54109 5.57009 5.63550 5.70732 5.75981 5.79086 5.81059 5.87917 5.92323 5.98839 6.00331 6.06993 6.20869 6.27668 6.32415 6.34807 6.51767 6.59335 6.74336 6.83400 6.84799 7.11226 7.19875 7.22561 7.25463 7.30377 7.41350 7.65174 7.72652 7.87841 8.05803 8.50113 9.10581 9.68049 11.17127 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.030040 B = 0.004091 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.859316 B = 6842.109686 C = 7477.751113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.034 0.966 4 C 0.061 3.939 5 N -0.678 5.678 6 C 0.065 3.935 7 C -0.057 4.057 8 C -0.128 4.128 9 C -0.119 4.119 10 C 0.034 3.966 11 C -0.507 4.507 12 H 0.058 0.942 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.278 1.278 19 N -0.505 5.505 20 C 0.046 3.954 21 C -0.134 4.134 22 C -0.132 4.132 23 C 0.034 3.966 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.030 0.970 29 H 0.335 0.665 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.031 0.969 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.259 0.741 41 H 0.132 0.868 42 H 0.034 0.966 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.036 0.964 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.471 8.090 13.739 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 H 0.052 0.948 4 C -0.068 4.068 5 N -0.310 5.310 6 C -0.063 4.063 7 C -0.057 4.057 8 C -0.186 4.186 9 C -0.176 4.176 10 C -0.003 4.003 11 C -0.545 4.545 12 H 0.076 0.924 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.715 3.285 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.204 1.204 19 N -0.230 5.230 20 C -0.081 4.081 21 C -0.173 4.173 22 C -0.170 4.170 23 C -0.094 4.094 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.048 0.952 29 H 0.154 0.846 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.149 0.851 42 H 0.052 0.948 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.694 6.915 13.917 20.066 hybrid contribution 1.202 1.521 -0.808 2.100 sum -11.492 8.436 13.109 19.367 Atomic orbital electron populations 1.21776 0.94330 1.02609 1.01258 1.21817 0.95320 0.95011 0.91260 0.94805 1.22023 0.89434 1.00809 0.94580 1.61374 1.04057 1.24936 1.40620 1.22167 0.96590 0.98252 0.89330 1.20608 0.91032 0.95576 0.98529 1.21766 1.02058 0.96151 0.98589 1.21678 1.01040 0.98747 0.96135 1.19110 0.95551 0.94914 0.90745 1.21202 0.91969 1.36370 1.04996 0.92375 1.25009 0.98108 0.95841 0.95589 1.69958 1.35414 1.39028 1.09376 0.86736 0.86255 0.78123 0.77341 1.20298 1.21459 1.20397 1.64799 1.11618 1.46441 1.00144 1.23760 0.86305 1.03181 0.94864 1.22661 0.97940 1.00127 0.96537 1.22394 0.96346 0.99955 0.98304 1.22863 0.98646 0.96178 0.91681 0.92810 0.92517 0.91632 0.90267 0.95191 0.84611 0.91448 0.96006 0.94984 0.91744 0.94212 0.94093 0.92751 0.93609 0.96678 0.97023 0.93128 0.85080 0.94764 0.91613 0.91179 0.92150 0.91641 0.94600 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.18 37.16 0.34 -1.00 16 2 C 0.08 0.84 2.22 -67.71 -0.15 0.69 16 3 H 0.03 0.39 7.96 -51.93 -0.41 -0.02 16 4 C 0.06 0.76 5.34 -3.82 -0.02 0.74 16 5 N -0.68 -9.38 2.01 -113.78 -0.23 -9.61 16 6 C 0.07 1.10 4.65 -3.82 -0.02 1.08 16 7 C -0.06 -1.11 0.60 -154.51 -0.09 -1.20 16 8 C -0.13 -2.34 7.89 37.15 0.29 -2.05 16 9 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 10 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 11 C -0.51 -13.81 7.65 -34.44 -0.26 -14.07 16 12 H 0.06 1.54 5.68 -52.48 -0.30 1.24 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 15 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 N -0.50 -6.03 5.11 -222.51 -1.14 -7.17 16 20 C 0.05 0.57 4.54 -1.90 -0.01 0.57 16 21 C -0.13 -1.50 7.06 -24.88 -0.18 -1.67 16 22 C -0.13 -1.29 6.93 -25.37 -0.18 -1.47 16 23 C 0.03 0.36 5.55 -2.75 -0.02 0.34 16 24 H 0.05 0.47 7.35 -51.93 -0.38 0.09 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.33 4.55 5.63 -39.29 -0.22 4.33 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 33 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 37 H 0.05 0.75 5.71 -51.93 -0.30 0.45 16 38 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.13 1.89 4.48 -51.93 -0.23 1.66 16 42 H 0.03 0.44 6.90 -51.93 -0.36 0.08 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.04 0.36 7.65 -51.93 -0.40 -0.04 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 352.03 15.07 5.30 5.30 Total: -1.00 -28.26 352.03 -9.65 -37.90 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -9.10 Total: 0.91 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -0.20 Total: -17.76 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -0.63 Total: -42.93 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.26 -9.65 -37.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135145924.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.826 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds