Wall clock time and date at job start Mon Mar 30 2020 07:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46905 * 109.46579 * 185.00135 * 4 2 1 6 6 C 1.46902 * 110.99478 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46983 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47275 * 300.00056 * 7 6 5 9 9 C 1.53004 * 109.46967 * 59.99680 * 7 6 5 10 10 C 1.53001 * 109.47227 * 179.97438 * 7 6 5 11 11 C 1.50701 * 109.47175 * 180.02562 * 10 7 6 12 12 H 1.08004 * 119.99967 * 359.97438 * 11 10 7 13 13 C 1.37877 * 120.00028 * 180.02562 * 11 10 7 14 14 N 1.31510 * 119.99872 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99957 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46965 * 59.99927 * 15 13 11 17 17 H 1.48498 * 109.47131 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47256 * 300.00083 * 15 13 11 19 19 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 20 20 C 1.48532 * 111.00167 * 177.60186 * 19 2 1 21 21 C 1.54928 * 103.22784 * 159.72352 * 20 19 2 22 22 C 1.54594 * 102.92393 * 322.58593 * 21 20 19 23 23 C 1.47900 * 111.00267 * 295.00250 * 19 2 1 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 28 28 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 29 29 H 1.00899 * 110.99764 * 303.94896 * 5 4 2 30 30 H 1.09003 * 109.46837 * 299.99264 * 6 5 4 31 31 H 1.08993 * 109.47729 * 59.99816 * 6 5 4 32 32 H 1.08998 * 109.47568 * 59.99625 * 8 7 6 33 33 H 1.09003 * 109.47313 * 180.02562 * 8 7 6 34 34 H 1.09005 * 109.47100 * 299.99812 * 8 7 6 35 35 H 1.09003 * 109.47426 * 60.00072 * 9 7 6 36 36 H 1.08999 * 109.47010 * 180.02562 * 9 7 6 37 37 H 1.08995 * 109.47259 * 300.00256 * 9 7 6 38 38 H 1.09003 * 109.46960 * 299.99801 * 10 7 6 39 39 H 1.08993 * 109.47363 * 60.00205 * 10 7 6 40 40 H 0.97008 * 119.99843 * 180.02562 * 14 13 11 41 41 H 1.08999 * 110.66679 * 278.16073 * 20 19 2 42 42 H 1.09004 * 110.66209 * 41.28817 * 20 19 2 43 43 H 1.09001 * 110.72421 * 204.23231 * 21 20 19 44 44 H 1.08998 * 110.88112 * 81.01955 * 21 20 19 45 45 H 1.08999 * 110.31256 * 263.04796 * 22 21 20 46 46 H 1.09000 * 110.30998 * 140.87304 * 22 21 20 47 47 H 1.09002 * 109.91231 * 333.50938 * 23 19 2 48 48 H 1.08997 * 109.92026 * 94.79910 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.0303 -1.5148 -2.3768 7 6 5.5546 -1.6047 -2.2799 8 6 6.1448 -0.1952 -2.2041 9 6 5.9404 -2.3874 -1.0231 10 6 6.1027 -2.3219 -3.5152 11 6 7.6040 -2.4110 -3.4195 12 1 8.1161 -1.9970 -2.5634 13 6 8.3240 -3.0201 -4.4253 14 7 7.7006 -3.5237 -5.4680 15 14 10.1850 -3.1298 -4.3070 16 1 10.5595 -3.8895 -3.0872 17 1 10.7170 -3.8261 -5.5059 18 1 10.7579 -1.7618 -4.2335 19 7 2.0197 -0.6925 1.1994 20 6 3.5033 -0.7628 1.2051 21 6 3.8407 -1.0123 2.6964 22 6 2.7915 -0.1517 3.4370 23 6 1.6462 0.0441 2.4264 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6053 -1.7197 -1.2952 28 1 1.7516 -0.1583 -2.1370 29 1 3.9279 0.0826 -1.0824 30 1 3.6095 -2.5189 -2.4309 31 1 3.7558 -0.9570 -3.2721 32 1 5.7543 0.3155 -1.3239 33 1 7.2308 -0.2592 -2.1356 34 1 5.8699 0.3624 -3.0995 35 1 5.5199 -3.3916 -1.0770 36 1 7.0263 -2.4510 -0.9539 37 1 5.5499 -1.8768 -0.1429 38 1 5.6822 -3.3262 -3.5687 39 1 5.8279 -1.7647 -4.4108 40 1 8.2071 -3.9525 -6.1755 41 1 3.8516 -1.5910 0.5880 42 1 3.9343 0.1791 0.8655 43 1 4.8504 -0.6715 2.9258 44 1 3.7239 -2.0659 2.9502 45 1 3.2198 0.8115 3.7144 46 1 2.4297 -0.6748 4.3221 47 1 1.5266 1.1039 2.2013 48 1 0.7188 -0.3587 2.8335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135145924.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:01 Heat of formation + Delta-G solvation = -18.830378 kcal Electronic energy + Delta-G solvation = -22008.541603 eV Core-core repulsion = 19097.261655 eV Total energy + Delta-G solvation = -2911.279948 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.40413 -38.86114 -36.24595 -34.65459 -33.35224 -30.02087 -29.57395 -28.98538 -27.88570 -27.29659 -25.73529 -23.94818 -22.53040 -21.61575 -21.00050 -19.39438 -18.31127 -17.49792 -16.87725 -16.53634 -16.15027 -15.81855 -15.32789 -14.84630 -14.81286 -14.57274 -14.18790 -13.88617 -13.82073 -13.65060 -13.46069 -13.17987 -12.99456 -12.77296 -12.71914 -12.46323 -12.28475 -12.20906 -12.17245 -12.05552 -11.94087 -11.82112 -11.65361 -11.60406 -11.31509 -11.27105 -10.82534 -10.68815 -10.48785 -9.22372 -8.94468 -8.12745 -6.19770 1.41515 1.43768 1.50970 2.44675 3.15438 3.21237 3.30287 3.83954 3.94223 4.09407 4.17152 4.22512 4.25075 4.32654 4.40664 4.51084 4.56771 4.63719 4.75704 4.78871 4.84487 4.88100 4.90158 4.97218 5.00509 5.05286 5.09401 5.10445 5.16111 5.21173 5.24170 5.28231 5.38361 5.45288 5.53632 5.54800 5.61224 5.65014 5.77472 5.90377 5.94634 6.07826 6.24119 6.32382 6.38371 6.52390 6.95450 7.47593 8.99482 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.030040 B = 0.004091 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.859316 B = 6842.109686 C = 7477.751113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 H 0.037 0.963 4 C 0.063 3.937 5 N -0.668 5.668 6 C 0.079 3.921 7 C -0.052 4.052 8 C -0.121 4.121 9 C -0.109 4.109 10 C 0.040 3.960 11 C -0.514 4.514 12 H 0.066 0.934 13 C -0.004 4.004 14 N -0.939 5.939 15 Si 0.955 3.045 16 H -0.268 1.268 17 H -0.289 1.289 18 H -0.268 1.268 19 N -0.518 5.518 20 C 0.047 3.953 21 C -0.135 4.135 22 C -0.128 4.128 23 C 0.035 3.965 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.340 0.660 30 H 0.054 0.946 31 H 0.015 0.985 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.028 0.972 36 H 0.037 0.963 37 H 0.074 0.926 38 H -0.017 1.017 39 H -0.018 1.018 40 H 0.259 0.741 41 H 0.111 0.889 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.041 0.959 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.626 9.573 15.743 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.030 4.030 3 H 0.055 0.945 4 C -0.066 4.066 5 N -0.300 5.300 6 C -0.050 4.050 7 C -0.052 4.052 8 C -0.178 4.178 9 C -0.166 4.166 10 C 0.003 3.997 11 C -0.552 4.552 12 H 0.084 0.916 13 C -0.201 4.201 14 N -0.580 5.580 15 Si 0.781 3.219 16 H -0.193 1.193 17 H -0.214 1.214 18 H -0.192 1.192 19 N -0.243 5.243 20 C -0.081 4.081 21 C -0.173 4.173 22 C -0.166 4.166 23 C -0.093 4.093 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.160 0.840 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.001 0.999 39 H 0.000 1.000 40 H 0.068 0.932 41 H 0.128 0.872 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.060 0.940 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.856 8.413 15.946 22.143 hybrid contribution 1.180 1.050 -1.424 2.127 sum -11.676 9.463 14.521 20.898 Atomic orbital electron populations 1.21735 0.92924 1.02525 1.02257 1.21800 0.96356 0.94637 0.90217 0.94534 1.22042 0.88111 1.00658 0.95824 1.61353 1.05171 1.25045 1.38450 1.21850 0.94690 0.98043 0.90425 1.20453 0.92773 0.95928 0.96095 1.21671 1.00872 0.95258 0.99999 1.21577 0.99835 0.98359 0.96802 1.18999 0.95008 0.93378 0.92352 1.21597 0.93102 1.35548 1.04949 0.91556 1.25914 1.03181 0.95665 0.95309 1.70107 1.37331 1.40260 1.10316 0.85646 0.80270 0.78568 0.77460 1.19315 1.21429 1.19247 1.64780 1.11220 1.47318 1.01011 1.23608 0.86841 1.02150 0.95458 1.22642 0.98771 1.00086 0.95825 1.22386 0.95667 1.00243 0.98290 1.22895 0.99064 0.96330 0.91026 0.91876 0.91481 0.92246 0.91258 0.94583 0.84029 0.92706 0.96723 0.91517 0.93460 0.94687 0.95291 0.94411 0.90731 0.99912 0.99984 0.93207 0.87171 0.94871 0.91057 0.91874 0.91206 0.90745 0.94021 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.18 71.98 0.66 -1.60 16 2 C 0.08 1.59 2.22 44.92 0.10 1.69 16 3 H 0.04 0.74 7.96 -2.39 -0.02 0.72 16 4 C 0.06 1.48 5.34 86.30 0.46 1.94 16 5 N -0.67 -17.62 2.01 -513.88 -1.03 -18.65 16 6 C 0.08 2.67 4.65 86.30 0.40 3.07 16 7 C -0.05 -2.04 0.60 -52.18 -0.03 -2.07 16 8 C -0.12 -4.28 7.89 71.98 0.57 -3.71 16 9 C -0.11 -4.04 8.06 71.98 0.58 -3.46 16 10 C 0.04 2.09 4.04 29.85 0.12 2.21 16 11 C -0.51 -28.46 7.65 25.60 0.20 -28.27 16 12 H 0.07 3.50 5.68 -2.91 -0.02 3.49 16 13 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 14 N -0.94 -57.78 13.29 21.45 0.28 -57.50 16 15 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 N -0.52 -11.30 5.11 -857.88 -4.38 -15.68 16 20 C 0.05 1.08 4.54 86.65 0.39 1.47 16 21 C -0.13 -2.72 7.06 31.80 0.22 -2.50 16 22 C -0.13 -2.15 6.93 31.47 0.22 -1.94 16 23 C 0.03 0.63 5.55 86.45 0.48 1.10 16 24 H 0.06 0.94 7.35 -2.39 -0.02 0.92 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.34 8.46 5.63 -89.69 -0.50 7.96 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 1.89 6.57 -2.39 -0.02 1.87 16 33 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 34 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.04 1.51 6.62 -2.39 -0.02 1.49 16 37 H 0.07 2.33 5.71 -2.39 -0.01 2.32 16 38 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 39 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 40 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 41 H 0.11 3.01 4.48 -2.39 -0.01 3.00 16 42 H 0.03 0.76 6.90 -2.38 -0.02 0.74 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.04 0.71 7.65 -2.39 -0.02 0.69 16 48 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -61.68 352.03 2.13 -59.56 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.39 Total: 17.54 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 4.83 Total: -31.82 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -5.13 Total: -91.83 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -61.68 2.13 -59.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135145924.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.727 kcal (2) G-P(sol) polarization free energy of solvation -61.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds