Wall clock time and date at job start Mon Mar 30 2020 08:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00232 * 2 1 4 4 H 1.48503 * 109.47106 * 264.86921 * 3 2 1 5 5 H 1.48499 * 109.46822 * 24.86527 * 3 2 1 6 6 H 1.48499 * 109.46993 * 144.86397 * 3 2 1 7 7 C 1.37878 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00515 * 4.76627 * 7 2 1 9 9 C 1.50702 * 119.99838 * 184.77106 * 7 2 1 10 10 H 1.08998 * 109.47051 * 335.00890 * 9 7 2 11 11 C 1.53000 * 109.47264 * 95.01282 * 9 7 2 12 12 N 1.46898 * 109.47183 * 185.27153 * 11 9 7 13 13 C 1.50704 * 109.46909 * 215.01681 * 9 7 2 14 14 C 1.38237 * 120.00335 * 299.99550 * 13 9 7 15 15 C 1.38221 * 120.01101 * 179.97438 * 14 13 9 16 16 C 1.38257 * 120.01917 * 0.02570 * 15 14 13 17 17 C 1.38196 * 120.01313 * 359.97316 * 16 15 14 18 18 C 1.38304 * 120.00644 * 119.72578 * 13 9 7 19 19 Br 1.89098 * 120.00998 * 0.02562 * 18 13 9 20 20 H 0.96999 * 120.00016 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46975 * 305.27310 * 11 9 7 22 22 H 1.08999 * 109.46982 * 65.27307 * 11 9 7 23 23 H 1.00909 * 110.99806 * 56.04419 * 12 11 9 24 24 H 1.00895 * 111.00170 * 180.02562 * 12 11 9 25 25 H 1.08002 * 119.99540 * 359.95746 * 14 13 9 26 26 H 1.08002 * 119.99048 * 180.02562 * 15 14 13 27 27 H 1.07998 * 119.99451 * 179.97438 * 16 15 14 28 28 H 1.07999 * 120.00754 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6051 1.9838 -1.3945 5 1 1.3966 2.6815 0.5887 6 1 3.4882 1.4738 0.8058 7 6 2.0045 -1.1941 -0.0005 8 1 1.4673 -2.1277 -0.0787 9 6 3.5076 -1.1964 0.1080 10 1 3.8998 -0.2481 -0.2593 11 6 3.9130 -1.3835 1.5714 12 7 5.3715 -1.2598 1.6952 13 6 4.0690 -2.3255 -0.7172 14 6 3.7120 -3.6311 -0.4361 15 6 4.2264 -4.6668 -1.1932 16 6 5.0987 -4.3976 -2.2316 17 6 5.4562 -3.0927 -2.5133 18 6 4.9372 -2.0553 -1.7593 19 35 5.4206 -0.2691 -2.1487 20 1 -0.4850 0.8400 0.0004 21 1 3.4305 -0.6207 2.1825 22 1 3.6020 -2.3714 1.9111 23 1 5.6921 -0.3768 1.3266 24 1 5.6646 -1.3800 2.6531 25 1 3.0312 -3.8419 0.3753 26 1 3.9469 -5.6866 -0.9736 27 1 5.5008 -5.2071 -2.8226 28 1 6.1373 -2.8825 -3.3247 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260082249.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:54:42 Heat of formation + Delta-G solvation = 18.550437 kcal Electronic energy + Delta-G solvation = -13377.308455 eV Core-core repulsion = 11052.879900 eV Total energy + Delta-G solvation = -2324.428556 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 269.011 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -38.86880 -35.30119 -32.43367 -31.77562 -30.94719 -28.77369 -27.67844 -23.75460 -22.61001 -21.51124 -19.45969 -17.11078 -16.23068 -15.01121 -14.86707 -14.63143 -13.90306 -13.50493 -13.10310 -12.76986 -12.72797 -12.37355 -11.82975 -11.30905 -11.02579 -10.69817 -10.42912 -10.28900 -10.12327 -9.90690 -9.63271 -9.01893 -8.57482 -8.21659 -8.00104 -7.84633 -6.17631 -4.18143 1.76631 2.01420 2.30731 3.24366 3.31277 3.34266 4.30793 4.34855 5.08357 5.34802 5.41401 5.44399 5.58634 5.87080 6.03343 6.21497 6.28529 6.45809 6.62744 6.72798 6.84339 6.88179 7.09334 7.38559 7.44840 7.56578 7.84064 8.04390 8.40617 8.87440 9.44293 10.94734 Molecular weight = 269.01amu Principal moments of inertia in cm(-1) A = 0.019510 B = 0.011844 C = 0.009530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.802563 B = 2363.591535 C = 2937.238860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.079 3.921 3 Si 0.866 3.134 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.078 0.922 9 C 0.031 3.969 10 H 0.060 0.940 11 C 0.069 3.931 12 N -0.854 5.854 13 C 0.024 3.976 14 C -0.106 4.106 15 C -0.109 4.109 16 C -0.146 4.146 17 C -0.095 4.095 18 C -0.094 4.094 19 Br -0.071 7.071 20 H 0.266 0.734 21 H 0.023 0.977 22 H 0.063 0.937 23 H 0.332 0.668 24 H 0.325 0.675 25 H 0.126 0.874 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.582 -3.233 -2.433 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.124 4.124 3 Si 0.692 3.308 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.546 4.546 8 H 0.097 0.903 9 C 0.012 3.988 10 H 0.078 0.922 11 C -0.062 4.062 12 N -0.382 5.382 13 C 0.022 3.978 14 C -0.125 4.125 15 C -0.127 4.127 16 C -0.165 4.165 17 C -0.115 4.115 18 C -0.173 4.173 19 Br 0.015 6.985 20 H 0.076 0.924 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.143 0.857 24 H 0.136 0.864 25 H 0.144 0.856 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.596 -3.076 -3.068 12.384 hybrid contribution -0.039 1.328 0.665 1.485 sum 11.557 -1.749 -2.403 11.933 Atomic orbital electron populations 1.69878 1.06226 1.27162 1.49685 1.24995 0.94651 0.98771 0.93970 0.87007 0.80197 0.83959 0.79590 1.19200 1.21531 1.19016 1.20841 0.87656 0.94936 1.51160 0.90348 1.18662 0.96778 0.93124 0.90243 0.92226 1.22248 0.85128 1.00033 0.98747 1.58919 1.14496 1.40498 1.24249 1.20058 0.89510 0.96113 0.92110 1.20961 0.99750 0.91592 1.00211 1.21153 0.97066 0.98873 0.95612 1.20837 1.00674 0.95616 0.99367 1.20879 0.99679 0.92062 0.98888 1.21616 1.04279 0.89615 1.01786 1.96510 1.91595 1.16464 1.93980 0.92438 0.95851 0.91825 0.85669 0.86399 0.85609 0.86533 0.86434 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.96 55.43 0.77 -25.83 15 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 15 3 Si 0.87 21.26 26.99 -169.99 -4.59 16.67 15 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.27 -6.17 6.82 56.52 0.39 -5.79 15 7 C -0.51 -13.71 8.64 -34.44 -0.30 -14.01 15 8 H 0.08 2.28 7.64 -52.49 -0.40 1.88 15 9 C 0.03 0.72 1.63 -92.92 -0.15 0.57 15 10 H 0.06 1.38 2.99 -51.93 -0.16 1.22 15 11 C 0.07 1.41 6.05 -3.82 -0.02 1.39 15 12 N -0.85 -14.94 9.35 -10.37 -0.10 -15.04 15 13 C 0.02 0.51 4.51 -104.60 -0.47 0.04 15 14 C -0.11 -2.05 8.54 -39.59 -0.34 -2.39 15 15 C -0.11 -1.77 10.05 -39.58 -0.40 -2.16 15 16 C -0.15 -2.25 10.05 -39.59 -0.40 -2.65 15 17 C -0.10 -1.60 9.79 -39.55 -0.39 -1.99 15 18 C -0.09 -1.84 6.22 -39.52 -0.25 -2.08 15 19 Br -0.07 -1.32 31.50 -68.01 -2.14 -3.47 15 20 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 21 H 0.02 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.06 1.28 7.22 -51.93 -0.37 0.91 15 23 H 0.33 5.78 8.99 -39.29 -0.35 5.43 15 24 H 0.33 4.79 9.08 -39.29 -0.36 4.43 15 25 H 0.13 2.40 7.47 -52.49 -0.39 2.01 15 26 H 0.12 1.55 8.06 -52.49 -0.42 1.12 15 27 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 28 H 0.12 1.72 8.06 -52.49 -0.42 1.30 15 LS Contribution 257.78 15.07 3.88 3.88 Total: -1.00 -29.12 257.78 -7.85 -36.97 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.88 Total: 7.95 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.81 Total: -21.15 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.68 Total: -40.86 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.59 Total: 16.67 kcal Atomic # 35 Polarization: -1.32 SS G_CDS: -2.14 Total: -3.47 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.12 -7.85 -36.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082249.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.523 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds