Wall clock time and date at job start Mon Mar 30 2020 08:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00232 * 2 1 4 4 H 1.48503 * 109.47106 * 264.86921 * 3 2 1 5 5 H 1.48499 * 109.46822 * 24.86527 * 3 2 1 6 6 H 1.48499 * 109.46993 * 144.86397 * 3 2 1 7 7 C 1.37878 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00515 * 4.76627 * 7 2 1 9 9 C 1.50702 * 119.99838 * 184.77106 * 7 2 1 10 10 H 1.08998 * 109.47051 * 335.00890 * 9 7 2 11 11 C 1.53000 * 109.47264 * 95.01282 * 9 7 2 12 12 N 1.46898 * 109.47183 * 185.27153 * 11 9 7 13 13 C 1.50704 * 109.46909 * 215.01681 * 9 7 2 14 14 C 1.38237 * 120.00335 * 299.99550 * 13 9 7 15 15 C 1.38221 * 120.01101 * 179.97438 * 14 13 9 16 16 C 1.38257 * 120.01917 * 0.02570 * 15 14 13 17 17 C 1.38196 * 120.01313 * 359.97316 * 16 15 14 18 18 C 1.38304 * 120.00644 * 119.72578 * 13 9 7 19 19 Br 1.89098 * 120.00998 * 0.02562 * 18 13 9 20 20 H 0.96999 * 120.00016 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46975 * 305.27310 * 11 9 7 22 22 H 1.08999 * 109.46982 * 65.27307 * 11 9 7 23 23 H 1.00909 * 110.99806 * 56.04419 * 12 11 9 24 24 H 1.00895 * 111.00170 * 180.02562 * 12 11 9 25 25 H 1.08002 * 119.99540 * 359.95746 * 14 13 9 26 26 H 1.08002 * 119.99048 * 180.02562 * 15 14 13 27 27 H 1.07998 * 119.99451 * 179.97438 * 16 15 14 28 28 H 1.07999 * 120.00754 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6051 1.9838 -1.3945 5 1 1.3966 2.6815 0.5887 6 1 3.4882 1.4738 0.8058 7 6 2.0045 -1.1941 -0.0005 8 1 1.4673 -2.1277 -0.0787 9 6 3.5076 -1.1964 0.1080 10 1 3.8998 -0.2481 -0.2593 11 6 3.9130 -1.3835 1.5714 12 7 5.3715 -1.2598 1.6952 13 6 4.0690 -2.3255 -0.7172 14 6 3.7120 -3.6311 -0.4361 15 6 4.2264 -4.6668 -1.1932 16 6 5.0987 -4.3976 -2.2316 17 6 5.4562 -3.0927 -2.5133 18 6 4.9372 -2.0553 -1.7593 19 35 5.4206 -0.2691 -2.1487 20 1 -0.4850 0.8400 0.0004 21 1 3.4305 -0.6207 2.1825 22 1 3.6020 -2.3714 1.9111 23 1 5.6921 -0.3768 1.3266 24 1 5.6646 -1.3800 2.6531 25 1 3.0312 -3.8419 0.3753 26 1 3.9469 -5.6866 -0.9736 27 1 5.5008 -5.2071 -2.8226 28 1 6.1373 -2.8825 -3.3247 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260082249.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:54:42 Heat of formation + Delta-G solvation = -0.638327 kcal Electronic energy + Delta-G solvation = -13378.140543 eV Core-core repulsion = 11052.879900 eV Total energy + Delta-G solvation = -2325.260643 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 269.011 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29479 -36.92240 -34.41965 -33.19246 -32.47361 -30.21873 -29.31198 -25.65098 -24.08374 -22.91106 -21.08340 -19.10658 -17.67597 -16.74427 -16.33976 -16.14967 -15.43683 -15.14441 -14.80037 -14.40800 -14.14972 -14.05739 -13.30365 -13.08223 -12.85606 -12.22844 -12.03153 -11.87197 -11.69418 -11.67705 -11.44802 -10.85091 -10.50960 -9.60317 -9.47955 -9.29438 -8.32956 -6.35724 0.39444 0.63869 0.87523 1.27776 1.32508 1.37862 2.29440 2.90346 3.06074 3.91109 4.02421 4.09022 4.28926 4.48380 4.65409 4.69010 4.69179 4.98085 5.06502 5.20920 5.31906 5.50903 5.54832 5.67304 5.82679 6.10709 6.26041 6.34842 6.66410 6.77399 7.29365 8.83219 Molecular weight = 269.01amu Principal moments of inertia in cm(-1) A = 0.019510 B = 0.011844 C = 0.009530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.802563 B = 2363.591535 C = 2937.238860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.025 3.975 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.245 1.245 7 C -0.502 4.502 8 H 0.042 0.958 9 C 0.032 3.968 10 H 0.059 0.941 11 C 0.078 3.922 12 N -0.845 5.845 13 C -0.007 4.007 14 C -0.128 4.128 15 C -0.103 4.103 16 C -0.133 4.133 17 C -0.096 4.096 18 C -0.113 4.113 19 Br -0.071 7.071 20 H 0.266 0.734 21 H 0.008 0.992 22 H 0.061 0.939 23 H 0.336 0.664 24 H 0.344 0.656 25 H 0.113 0.887 26 H 0.149 0.851 27 H 0.161 0.839 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.024 -4.057 -3.164 14.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.173 4.173 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.169 1.169 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.013 3.987 10 H 0.077 0.923 11 C -0.053 4.053 12 N -0.374 5.374 13 C -0.009 4.009 14 C -0.147 4.147 15 C -0.121 4.121 16 C -0.151 4.151 17 C -0.115 4.115 18 C -0.191 4.191 19 Br 0.014 6.986 20 H 0.075 0.925 21 H 0.026 0.974 22 H 0.080 0.920 23 H 0.147 0.853 24 H 0.157 0.843 25 H 0.131 0.869 26 H 0.167 0.833 27 H 0.178 0.822 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.075 -3.911 -3.784 15.090 hybrid contribution -0.761 1.413 0.860 1.821 sum 13.314 -2.498 -2.924 13.858 Atomic orbital electron populations 1.70011 1.07910 1.27926 1.52322 1.25723 0.95248 1.02133 0.94193 0.86189 0.79774 0.80033 0.80053 1.18715 1.21438 1.16884 1.21076 0.90235 0.93312 1.49439 0.94010 1.18544 0.93853 0.94285 0.92035 0.92336 1.21934 0.86945 0.99428 0.96967 1.58773 1.12141 1.40695 1.25823 1.19923 0.91615 0.96043 0.93314 1.21037 1.00488 0.92136 1.01058 1.21522 0.96175 0.99573 0.94869 1.21348 0.99017 0.96227 0.98547 1.21273 0.99429 0.91983 0.98846 1.21814 1.04823 0.90474 1.02035 1.96485 1.91449 1.16770 1.93875 0.92498 0.97351 0.92034 0.85273 0.84278 0.86904 0.83308 0.82167 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.10 13.96 21.45 0.30 -57.81 15 2 C 0.03 1.44 5.47 84.66 0.46 1.90 15 3 Si 0.92 43.96 26.99 68.60 1.85 45.81 15 4 H -0.26 -12.32 7.11 99.48 0.71 -11.61 15 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 15 6 H -0.25 -10.84 6.82 99.48 0.68 -10.16 15 7 C -0.50 -27.90 8.64 25.60 0.22 -27.67 15 8 H 0.04 2.56 7.64 -2.91 -0.02 2.54 15 9 C 0.03 1.47 1.63 -12.28 -0.02 1.45 15 10 H 0.06 2.66 2.99 -2.39 -0.01 2.65 15 11 C 0.08 3.19 6.05 86.30 0.52 3.72 15 12 N -0.84 -28.13 9.35 -186.72 -1.75 -29.88 15 13 C -0.01 -0.29 4.51 -19.85 -0.09 -0.38 15 14 C -0.13 -4.85 8.54 22.27 0.19 -4.66 15 15 C -0.10 -3.05 10.05 22.27 0.22 -2.82 15 16 C -0.13 -3.51 10.05 22.26 0.22 -3.29 15 17 C -0.10 -2.88 9.79 22.29 0.22 -2.66 15 18 C -0.11 -4.19 6.22 22.31 0.14 -4.05 15 19 Br -0.07 -2.53 31.50 -20.37 -0.64 -3.17 15 20 H 0.27 15.46 8.31 -92.71 -0.77 14.68 15 21 H 0.01 0.36 8.14 -2.39 -0.02 0.34 15 22 H 0.06 2.50 7.22 -2.39 -0.02 2.49 15 23 H 0.34 11.00 8.99 -89.69 -0.81 10.19 15 24 H 0.34 9.40 9.08 -89.70 -0.81 8.58 15 25 H 0.11 4.42 7.47 -2.91 -0.02 4.40 15 26 H 0.15 3.36 8.06 -2.91 -0.02 3.34 15 27 H 0.16 2.90 8.06 -2.91 -0.02 2.88 15 28 H 0.15 3.57 8.06 -2.91 -0.02 3.55 15 Total: -1.00 -64.02 257.78 1.40 -62.63 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -0.46 Total: 20.88 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 2.09 Total: -38.46 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -1.45 Total: -87.68 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.85 Total: 45.81 kcal Atomic # 35 Polarization: -2.53 SS G_CDS: -0.64 Total: -3.17 kcal Total: -64.02 1.40 -62.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082249.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.987 kcal (2) G-P(sol) polarization free energy of solvation -64.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds