Wall clock time and date at job start Mon Mar 30 2020 08:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30539 * 1 3 3 Si 1.86802 * 120.00119 * 2 1 4 4 H 1.48500 * 109.46910 * 274.99775 * 3 2 1 5 5 H 1.48501 * 109.46952 * 34.99525 * 3 2 1 6 6 H 1.48498 * 109.47372 * 154.99555 * 3 2 1 7 7 C 1.40323 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00418 * 174.94872 * 7 2 1 9 9 C 1.41786 * 120.00311 * 354.95489 * 7 2 1 10 10 O 1.21845 * 119.99517 * 5.05194 * 9 7 2 11 11 C 1.47422 * 120.00436 * 185.05433 * 9 7 2 12 12 C 1.39882 * 120.21753 * 354.19694 * 11 9 7 13 13 C 1.37636 * 119.93586 * 180.27498 * 12 11 9 14 14 C 1.38795 * 120.39292 * 0.02562 * 13 12 11 15 15 C 1.38006 * 120.45320 * 359.97438 * 14 13 12 16 16 Br 1.89101 * 119.97498 * 179.97438 * 15 14 13 17 17 C 1.39061 * 120.04536 * 0.02562 * 15 14 13 18 18 N 1.38751 * 120.18995 * 180.02562 * 17 15 14 19 19 H 0.96995 * 120.00141 * 0.02562 * 1 2 3 20 20 H 1.07994 * 120.02995 * 0.27551 * 12 11 9 21 21 H 1.08005 * 119.80271 * 179.97438 * 13 12 11 22 22 H 1.08008 * 119.77496 * 180.02562 * 14 13 12 23 23 H 0.96992 * 120.00443 * 335.07570 * 18 17 15 24 24 H 0.97000 * 119.99380 * 155.08252 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.3813 2.1074 -1.3948 5 1 1.4936 2.6199 0.8030 6 1 3.5858 1.4120 0.5918 7 6 2.0070 -1.2152 0.0005 8 1 3.0839 -1.2171 -0.0818 9 6 1.3023 -2.4408 0.1091 10 8 0.0839 -2.4448 0.1091 11 6 2.0437 -3.7100 0.2219 12 6 3.4372 -3.7245 0.1009 13 6 4.1230 -4.9135 0.2016 14 6 3.4402 -6.1015 0.4223 15 6 2.0655 -6.1059 0.5442 16 35 1.1488 -7.7324 0.8441 17 6 1.3540 -4.9152 0.4456 18 7 -0.0281 -4.9160 0.5682 19 1 -0.4850 0.8400 -0.0004 20 1 3.9743 -2.8036 -0.0713 21 1 5.1989 -4.9223 0.1074 22 1 3.9884 -7.0289 0.5001 23 1 -0.5327 -5.7186 0.3633 24 1 -0.4896 -4.1139 0.8587 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261337477.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:48:52 Heat of formation + Delta-G solvation = -17.298064 kcal Electronic energy + Delta-G solvation = -12814.295119 eV Core-core repulsion = 10352.478961 eV Total energy + Delta-G solvation = -2461.816158 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 268.979 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.93580 -36.23894 -33.94714 -32.67239 -31.52561 -29.43255 -27.64751 -26.61910 -22.87901 -21.25108 -19.75072 -16.68863 -16.50292 -15.95298 -15.47661 -14.50440 -13.90395 -13.37935 -13.17458 -12.98511 -12.59178 -11.83774 -11.51135 -11.38340 -11.08423 -10.80763 -10.42793 -10.29196 -10.20730 -9.94274 -9.78042 -9.04288 -8.05983 -7.53800 -6.90337 -6.38244 -4.97263 1.69337 2.09986 2.15388 3.00343 3.09334 3.12927 3.94684 3.96599 4.56823 4.70693 5.37341 5.67541 5.70856 5.86828 6.02512 6.26431 6.54602 6.75288 6.87157 7.14083 7.22965 7.46847 7.95358 8.22873 8.54653 8.72085 8.86077 10.21950 10.43581 Molecular weight = 268.98amu Principal moments of inertia in cm(-1) A = 0.047334 B = 0.005831 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.404575 B = 4800.480930 C = 5369.706810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.080 3.920 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.514 4.514 8 H 0.075 0.925 9 C 0.397 3.603 10 O -0.546 6.546 11 C -0.175 4.175 12 C -0.037 4.037 13 C -0.191 4.191 14 C -0.056 4.056 15 C -0.184 4.184 16 Br -0.080 7.080 17 C 0.270 3.730 18 N -0.853 5.853 19 H 0.274 0.726 20 H 0.132 0.868 21 H 0.118 0.882 22 H 0.119 0.881 23 H 0.385 0.615 24 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -10.316 1.361 11.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.545 4.545 8 H 0.093 0.907 9 C 0.295 3.705 10 O -0.436 6.436 11 C -0.182 4.182 12 C -0.057 4.057 13 C -0.212 4.212 14 C -0.076 4.076 15 C -0.268 4.268 16 Br 0.004 6.996 17 C 0.158 3.842 18 N -0.400 5.400 19 H 0.085 0.915 20 H 0.150 0.850 21 H 0.136 0.864 22 H 0.137 0.863 23 H 0.214 0.786 24 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.402 -10.813 1.493 11.434 hybrid contribution 0.516 0.994 -0.086 1.123 sum 3.918 -9.819 1.407 10.665 Atomic orbital electron populations 1.69949 1.07535 1.28166 1.30569 1.26002 0.94661 1.01060 0.92641 0.86351 0.80631 0.80928 0.79047 1.19464 1.20105 1.18381 1.20890 0.95276 0.91569 1.46786 0.90670 1.17910 0.88178 0.85523 0.78870 1.90290 1.15093 1.87326 1.50927 1.21523 0.94602 0.96016 1.06046 1.21444 0.93347 0.97727 0.93146 1.20789 0.99299 0.92296 1.08812 1.20752 0.91416 0.98301 0.97144 1.21292 0.94800 0.89704 1.20989 1.96478 1.77841 1.29201 1.96035 1.17760 0.85204 0.91287 0.89980 1.43045 1.03420 1.18680 1.74855 0.91482 0.84983 0.86357 0.86322 0.78649 0.74181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.31 11.75 55.57 0.65 -19.65 14 2 C 0.08 2.07 5.50 -17.32 -0.10 1.98 14 3 Si 0.91 18.68 29.56 -169.99 -5.03 13.66 14 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 14 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 14 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 14 7 C -0.51 -13.61 8.85 -37.44 -0.33 -13.94 14 8 H 0.08 1.80 6.05 -52.49 -0.32 1.49 14 9 C 0.40 10.77 6.88 -34.49 -0.24 10.53 14 10 O -0.55 -16.03 12.40 5.06 0.06 -15.97 14 11 C -0.18 -4.04 5.90 -104.63 -0.62 -4.66 14 12 C -0.04 -0.73 9.43 -39.19 -0.37 -1.10 14 13 C -0.19 -3.19 10.02 -39.60 -0.40 -3.58 14 14 C -0.06 -0.92 9.77 -39.46 -0.39 -1.31 14 15 C -0.18 -3.37 6.24 -39.36 -0.25 -3.61 14 16 Br -0.08 -1.22 32.30 -68.01 -2.20 -3.42 14 17 C 0.27 5.71 6.76 -83.52 -0.56 5.15 14 18 N -0.85 -17.40 8.27 32.60 0.27 -17.13 14 19 H 0.27 6.82 8.29 -40.82 -0.34 6.49 14 20 H 0.13 2.46 6.23 -52.49 -0.33 2.14 14 21 H 0.12 1.59 8.06 -52.48 -0.42 1.17 14 22 H 0.12 1.64 8.06 -52.48 -0.42 1.22 14 23 H 0.39 6.83 7.64 -40.82 -0.31 6.51 14 24 H 0.42 9.41 6.15 -40.82 -0.25 9.16 14 LS Contribution 235.42 15.07 3.55 3.55 Total: -1.00 -29.24 235.42 -7.12 -36.36 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -1.19 Total: 13.15 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -3.24 Total: -10.55 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.92 Total: -36.78 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.06 Total: -15.97 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 35 Polarization: -1.22 SS G_CDS: -2.20 Total: -3.42 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.24 -7.12 -36.36 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261337477.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.062 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds