Wall clock time and date at job start Mon Mar 30 2020 08:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30538 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48496 * 109.47121 * 269.99894 * 3 2 1 5 5 H 1.48497 * 109.47316 * 30.00212 * 3 2 1 6 6 H 1.48502 * 109.46907 * 150.00168 * 3 2 1 7 7 C 1.40327 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00111 * 180.02562 * 7 2 1 9 9 C 1.41771 * 119.99592 * 359.97438 * 7 2 1 10 10 O 1.21849 * 120.00355 * 0.02562 * 9 7 2 11 11 C 1.47416 * 119.99606 * 180.02562 * 9 7 2 12 12 C 1.39857 * 120.22414 * 5.78836 * 11 9 7 13 13 C 1.37715 * 119.91692 * 179.97438 * 12 11 9 14 14 Br 1.89102 * 119.81981 * 179.97438 * 13 12 11 15 15 C 1.38895 * 120.36542 * 359.72054 * 13 12 11 16 16 C 1.37929 * 120.44705 * 0.55908 * 15 13 12 17 17 C 1.38975 * 120.07510 * 359.44778 * 16 15 13 18 18 N 1.38731 * 120.18147 * 180.25565 * 17 16 15 19 19 H 0.97006 * 119.99907 * 359.97438 * 1 2 3 20 20 H 1.08006 * 120.03702 * 359.95271 * 12 11 9 21 21 H 1.08007 * 119.77611 * 180.27756 * 15 13 12 22 22 H 1.07996 * 119.95974 * 179.71989 * 16 15 13 23 23 H 0.97004 * 120.00036 * 354.57794 * 18 17 16 24 24 H 0.96998 * 120.00080 * 174.58131 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4869 2.0464 -1.4000 5 1 1.4369 2.6527 0.7001 6 1 3.5370 1.4401 0.7000 7 6 2.0070 -1.2153 -0.0005 8 1 3.0870 -1.2153 -0.0001 9 6 1.2981 -2.4430 -0.0005 10 8 0.0796 -2.4430 -0.0005 11 6 2.0352 -3.7197 -0.0005 12 6 3.4284 -3.7282 0.1213 13 6 4.1105 -4.9245 0.1211 14 35 5.9944 -4.9329 0.2853 15 6 3.4220 -6.1254 0.0062 16 6 2.0486 -6.1342 -0.1205 17 6 1.3417 -4.9377 -0.1226 18 7 -0.0403 -4.9443 -0.2447 19 1 -0.4850 0.8401 0.0004 20 1 3.9686 -2.7977 0.2151 21 1 3.9662 -7.0583 0.0116 22 1 1.5217 -7.0723 -0.2139 23 1 -0.5088 -5.7779 -0.4077 24 1 -0.5380 -4.1154 -0.1671 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261352622.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:48:49 Heat of formation + Delta-G solvation = -19.336353 kcal Electronic energy + Delta-G solvation = -12768.011070 eV Core-core repulsion = 10306.106526 eV Total energy + Delta-G solvation = -2461.904545 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 268.979 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.95956 -36.30136 -34.07116 -32.67693 -30.68879 -30.48622 -27.25304 -26.58738 -23.00728 -21.43103 -19.62846 -16.75655 -16.53411 -15.95830 -15.45570 -14.51021 -13.71762 -13.30734 -13.23508 -13.13794 -12.60184 -11.81175 -11.51709 -11.36747 -11.13136 -10.88252 -10.82512 -10.42392 -10.21542 -9.79028 -9.37983 -9.07287 -8.24156 -7.59111 -6.82261 -6.41345 -5.00688 1.78089 2.05246 2.27924 3.01026 3.09587 3.13365 3.94618 3.95174 4.56294 4.70073 5.38057 5.47013 5.68311 5.89532 6.03456 6.32854 6.58277 6.74436 6.83443 6.99959 7.15759 7.41310 7.92666 8.20640 8.50478 8.69450 8.90066 10.18564 10.40302 Molecular weight = 268.98amu Principal moments of inertia in cm(-1) A = 0.021171 B = 0.007602 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.254010 B = 3682.569947 C = 4991.634406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.080 3.920 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.511 4.511 8 H 0.076 0.924 9 C 0.399 3.601 10 O -0.550 6.550 11 C -0.188 4.188 12 C -0.013 4.013 13 C -0.169 4.169 14 Br -0.086 7.086 15 C -0.044 4.044 16 C -0.224 4.224 17 C 0.264 3.736 18 N -0.854 5.854 19 H 0.275 0.725 20 H 0.136 0.864 21 H 0.119 0.881 22 H 0.119 0.881 23 H 0.380 0.620 24 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.771 -8.269 0.030 11.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.542 4.542 8 H 0.094 0.906 9 C 0.299 3.701 10 O -0.442 6.442 11 C -0.195 4.195 12 C -0.034 4.034 13 C -0.250 4.250 14 Br -0.002 7.002 15 C -0.065 4.065 16 C -0.248 4.248 17 C 0.152 3.848 18 N -0.403 5.403 19 H 0.086 0.914 20 H 0.153 0.847 21 H 0.137 0.863 22 H 0.137 0.863 23 H 0.206 0.794 24 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 7.667 -8.110 0.105 11.161 hybrid contribution -0.115 0.575 -0.093 0.594 sum 7.551 -7.535 0.013 10.668 Atomic orbital electron populations 1.69941 1.07553 1.28272 1.30332 1.26010 0.94680 1.01120 0.92545 0.86356 0.80582 0.80698 0.79325 1.19296 1.20113 1.18315 1.20897 0.95105 0.91450 1.46713 0.90564 1.17878 0.87952 0.85753 0.78511 1.90099 1.15271 1.86783 1.52025 1.21249 0.93547 0.95941 1.08760 1.21215 0.93320 0.96252 0.92584 1.21237 0.88382 0.96381 1.18980 1.96505 1.06663 1.99347 1.97710 1.20667 0.93477 0.95921 0.96461 1.20472 0.93898 0.96213 1.14183 1.18252 0.84951 0.92768 0.88822 1.43661 1.04183 1.14465 1.78029 0.91408 0.84660 0.86292 0.86325 0.79390 0.73287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.21 11.73 55.57 0.65 -19.56 14 2 C 0.08 2.09 5.50 -17.32 -0.10 2.00 14 3 Si 0.91 18.88 29.56 -169.99 -5.03 13.85 14 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 14 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 14 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 14 7 C -0.51 -13.66 8.85 -37.45 -0.33 -13.99 14 8 H 0.08 1.88 6.06 -52.49 -0.32 1.56 14 9 C 0.40 10.85 6.89 -34.50 -0.24 10.61 14 10 O -0.55 -16.02 12.20 5.06 0.06 -15.95 14 11 C -0.19 -4.35 5.90 -104.63 -0.62 -4.97 14 12 C -0.01 -0.27 9.15 -39.17 -0.36 -0.63 14 13 C -0.17 -3.06 6.22 -39.53 -0.25 -3.31 14 14 Br -0.09 -1.34 33.68 -68.01 -2.29 -3.63 14 15 C -0.04 -0.74 9.77 -39.45 -0.39 -1.12 14 16 C -0.22 -3.82 9.88 -39.42 -0.39 -4.21 14 17 C 0.26 5.40 6.77 -83.54 -0.57 4.84 14 18 N -0.85 -16.38 8.93 32.59 0.29 -16.09 14 19 H 0.27 6.81 8.29 -40.82 -0.34 6.48 14 20 H 0.14 2.78 6.24 -52.48 -0.33 2.45 14 21 H 0.12 1.64 8.06 -52.48 -0.42 1.22 14 22 H 0.12 1.66 8.06 -52.49 -0.42 1.24 14 23 H 0.38 5.70 8.84 -40.82 -0.36 5.34 14 24 H 0.42 9.31 5.34 -40.92 -0.22 9.09 14 LS Contribution 237.25 15.07 3.58 3.58 Total: -1.00 -29.20 237.25 -7.17 -36.37 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -1.20 Total: 12.23 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.23 Total: -10.79 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.94 Total: -35.65 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.06 Total: -15.95 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 35 Polarization: -1.34 SS G_CDS: -2.29 Total: -3.63 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.20 -7.17 -36.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261352622.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.029 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds