Wall clock time and date at job start Mon Mar 30 2020 08:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47410 * 2 1 4 4 C 1.46892 * 110.99917 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47083 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.50244 * 55.00416 * 5 4 3 7 7 C 1.53121 * 109.53664 * 294.90297 * 5 4 3 8 8 C 1.53114 * 109.15992 * 182.38283 * 7 5 4 9 9 C 1.53036 * 109.28047 * 57.65972 * 8 7 5 10 10 N 1.46844 * 109.52085 * 300.81827 * 9 8 7 11 11 C 1.46899 * 111.00001 * 185.83807 * 10 9 8 12 12 C 1.52997 * 109.47023 * 45.79334 * 11 10 9 13 13 C 1.53004 * 109.47164 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47164 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47187 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99781 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00375 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00328 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46763 * 60.00212 * 19 17 15 21 21 H 1.48501 * 109.46937 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47417 * 300.00232 * 19 17 15 23 23 C 1.46847 * 111.19784 * 61.73796 * 10 9 8 24 24 H 1.08995 * 109.47069 * 300.00432 * 1 2 3 25 25 H 1.09010 * 109.46917 * 59.99826 * 1 2 3 26 26 H 1.09003 * 109.47687 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47069 * 239.99568 * 2 1 3 28 28 H 1.08997 * 109.46665 * 120.00119 * 2 1 3 29 29 H 1.00903 * 110.99809 * 56.04599 * 3 2 1 30 30 H 1.09000 * 109.47213 * 60.00342 * 4 3 2 31 31 H 1.08993 * 109.47790 * 300.00144 * 4 3 2 32 32 H 1.08999 * 109.52397 * 302.29366 * 7 5 4 33 33 H 1.09007 * 109.51903 * 62.47515 * 7 5 4 34 34 H 1.09002 * 109.50460 * 297.71044 * 8 7 5 35 35 H 1.09003 * 109.50241 * 177.59784 * 8 7 5 36 36 H 1.08993 * 109.46063 * 180.80377 * 9 8 7 37 37 H 1.08999 * 109.46203 * 60.83239 * 9 8 7 38 38 H 1.09006 * 109.47140 * 165.79193 * 11 10 9 39 39 H 1.08994 * 109.46961 * 285.78895 * 11 10 9 40 40 H 1.08999 * 109.46683 * 299.99832 * 12 11 10 41 41 H 1.08995 * 109.47361 * 59.99470 * 12 11 10 42 42 H 1.09001 * 109.46426 * 299.99901 * 13 12 11 43 43 H 1.08994 * 109.47080 * 59.99401 * 13 12 11 44 44 H 1.08999 * 109.46683 * 299.99599 * 14 13 12 45 45 H 1.08995 * 109.47361 * 59.99238 * 14 13 12 46 46 H 0.96997 * 120.00690 * 180.02562 * 18 17 15 47 47 H 1.08999 * 109.46500 * 178.23954 * 23 10 9 48 48 H 1.09004 * 109.45191 * 58.27467 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4240 0.0006 5 6 3.9596 2.8796 0.0012 6 1 3.5107 3.4072 0.8429 7 6 3.5398 3.5544 -1.3076 8 6 4.0670 4.9918 -1.3235 9 6 5.5885 4.9739 -1.1609 10 7 5.9389 4.3191 0.1059 11 6 7.3828 4.4062 0.3619 12 6 7.8638 5.8329 0.0897 13 6 9.3678 5.9236 0.3557 14 6 9.8489 7.3501 0.0829 15 6 11.3301 7.4395 0.3455 16 1 11.8739 6.5663 0.6744 17 6 11.9911 8.6360 0.1657 18 7 11.3289 9.6995 -0.2344 19 14 13.8271 8.7470 0.4919 20 1 14.5462 7.8024 -0.4001 21 1 14.2940 10.1316 0.2270 22 1 14.1004 8.3955 1.9085 23 6 5.4842 2.9229 0.1255 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6442 1.9012 0.7814 30 1 3.8654 0.9200 -0.8892 31 1 3.8647 0.9202 0.8907 32 1 3.9566 3.0041 -2.1511 33 1 2.4522 3.5644 -1.3797 34 1 3.6197 5.5526 -0.5028 35 1 3.8079 5.4640 -2.2712 36 1 5.9655 5.9966 -1.1575 37 1 6.0359 4.4248 -1.9894 38 1 7.5838 4.1471 1.4014 39 1 7.9104 3.7136 -0.2937 40 1 7.6627 6.0919 -0.9498 41 1 7.3360 6.5255 0.7453 42 1 9.5691 5.6643 1.3951 43 1 9.8951 5.2310 -0.3002 44 1 9.6475 7.6088 -0.9566 45 1 9.3215 8.0430 0.7385 46 1 11.7939 10.5412 -0.3612 47 1 5.7856 2.4559 1.0632 48 1 5.9322 2.3835 -0.7091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385210790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:07 Heat of formation + Delta-G solvation = -33.841132 kcal Electronic energy + Delta-G solvation = -20433.304710 eV Core-core repulsion = 17521.373846 eV Total energy + Delta-G solvation = -2911.930863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.42899 -37.03591 -35.14261 -33.47036 -32.09153 -31.68684 -29.67084 -28.18711 -25.42899 -24.87436 -23.11637 -22.33741 -22.30527 -20.55294 -19.82870 -19.64493 -16.32524 -16.18094 -15.71967 -15.55739 -15.15118 -14.76219 -14.49689 -14.43554 -14.13836 -13.77126 -13.70912 -12.99467 -12.58677 -12.54401 -12.43842 -12.19270 -11.95201 -11.80906 -11.60412 -11.47170 -11.32916 -11.09187 -10.98124 -10.74634 -10.54960 -10.52537 -10.45419 -10.28275 -10.05033 -9.56783 -9.22233 -8.98949 -8.75511 -8.30459 -8.16948 -5.95533 -3.97767 3.35543 3.39654 3.42281 3.70647 4.09556 4.49243 4.60308 4.68667 4.79966 4.84836 4.89350 5.10234 5.15354 5.22614 5.30181 5.39596 5.40188 5.42127 5.44695 5.50757 5.55329 5.57424 5.61349 5.76043 5.78482 5.80554 5.93263 5.95409 6.02227 6.08140 6.19280 6.24549 6.35062 6.38690 6.54280 6.67103 6.84562 6.98719 7.03047 7.14569 7.23883 7.30980 7.73030 7.89371 8.05468 8.48413 9.09454 9.65844 11.15746 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.059058 B = 0.002420 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.992762 B =11569.228102 C =11906.621719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 N -0.688 5.688 4 C 0.064 3.936 5 C -0.081 4.081 6 H 0.077 0.923 7 C -0.104 4.104 8 C -0.119 4.119 9 C 0.047 3.953 10 N -0.538 5.538 11 C 0.057 3.943 12 C -0.120 4.120 13 C -0.109 4.109 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.053 0.947 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.062 3.938 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.340 0.660 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.014 0.986 45 H 0.015 0.985 46 H 0.260 0.740 47 H 0.070 0.930 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.491 -17.793 -0.415 27.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.319 5.319 4 C -0.066 4.066 5 C -0.100 4.100 6 H 0.095 0.905 7 C -0.142 4.142 8 C -0.157 4.157 9 C -0.081 4.081 10 N -0.262 5.262 11 C -0.070 4.070 12 C -0.158 4.158 13 C -0.147 4.147 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.158 0.842 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -20.755 -17.298 -0.769 27.029 hybrid contribution 1.745 -0.607 0.442 1.900 sum -19.009 -17.905 -0.327 26.116 Atomic orbital electron populations 1.21767 0.94943 1.01657 1.02452 1.21913 0.95699 0.89627 1.00391 1.60479 1.08018 1.13356 1.50089 1.21972 0.87460 0.96725 1.00430 1.21160 0.94880 0.94585 0.99363 0.90475 1.21507 1.01217 0.95205 0.96284 1.21630 0.95247 0.97071 1.01725 1.22244 0.95750 1.00387 0.89712 1.61968 1.15774 1.14751 1.33718 1.22221 0.85735 0.98272 1.00791 1.21815 0.97974 0.94599 1.01418 1.21599 0.92215 1.00913 1.00000 1.19081 0.95572 0.90049 0.96845 1.21253 0.94040 0.95532 1.45053 0.92839 1.25034 0.98209 0.95903 0.95399 1.69957 1.35902 1.00656 1.47035 0.86668 0.85681 0.76955 0.78740 1.20307 1.21300 1.20277 1.22035 0.94636 0.89521 1.00533 0.92833 0.91783 0.92287 0.91147 0.95506 0.84181 0.91127 0.95246 0.92808 0.90972 0.91281 0.91762 0.89523 0.95272 0.90982 0.95287 0.92275 0.91639 0.93433 0.93714 0.96775 0.96615 0.93007 0.91192 0.95155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.17 37.16 0.38 -0.48 16 2 C 0.05 0.35 6.40 -3.82 -0.02 0.33 16 3 N -0.69 -5.29 6.01 -113.79 -0.68 -5.98 16 4 C 0.06 0.53 5.08 -3.83 -0.02 0.51 16 5 C -0.08 -0.77 2.49 -90.54 -0.23 -1.00 16 6 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 7 C -0.10 -1.03 5.14 -26.61 -0.14 -1.17 16 8 C -0.12 -1.29 6.09 -26.65 -0.16 -1.46 16 9 C 0.05 0.61 4.85 -3.84 -0.02 0.59 16 10 N -0.54 -7.21 4.81 -234.68 -1.13 -8.34 16 11 C 0.06 0.85 5.27 -3.83 -0.02 0.83 16 12 C -0.12 -2.11 4.46 -26.73 -0.12 -2.23 16 13 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 14 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 15 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 16 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.06 0.69 4.71 -3.84 -0.02 0.67 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.34 2.41 8.73 -39.29 -0.34 2.07 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.22 5.81 -51.93 -0.30 0.92 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 40 H 0.06 1.03 6.21 -51.93 -0.32 0.71 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 48 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -30.10 369.87 -11.37 -41.47 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -9.79 Total: -3.71 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -1.05 Total: -19.31 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -1.08 Total: -41.03 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.10 -11.37 -41.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385210790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.625 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds