Wall clock time and date at job start Mon Mar 30 2020 08:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47410 * 2 1 4 4 C 1.46892 * 110.99917 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47083 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.50244 * 55.00416 * 5 4 3 7 7 C 1.53121 * 109.53664 * 294.90297 * 5 4 3 8 8 C 1.53114 * 109.15992 * 182.38283 * 7 5 4 9 9 C 1.53036 * 109.28047 * 57.65972 * 8 7 5 10 10 N 1.46844 * 109.52085 * 300.81827 * 9 8 7 11 11 C 1.46899 * 111.00001 * 185.83807 * 10 9 8 12 12 C 1.52997 * 109.47023 * 45.79334 * 11 10 9 13 13 C 1.53004 * 109.47164 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47164 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47187 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99781 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00375 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00328 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46763 * 60.00212 * 19 17 15 21 21 H 1.48501 * 109.46937 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47417 * 300.00232 * 19 17 15 23 23 C 1.46847 * 111.19784 * 61.73796 * 10 9 8 24 24 H 1.08995 * 109.47069 * 300.00432 * 1 2 3 25 25 H 1.09010 * 109.46917 * 59.99826 * 1 2 3 26 26 H 1.09003 * 109.47687 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47069 * 239.99568 * 2 1 3 28 28 H 1.08997 * 109.46665 * 120.00119 * 2 1 3 29 29 H 1.00903 * 110.99809 * 56.04599 * 3 2 1 30 30 H 1.09000 * 109.47213 * 60.00342 * 4 3 2 31 31 H 1.08993 * 109.47790 * 300.00144 * 4 3 2 32 32 H 1.08999 * 109.52397 * 302.29366 * 7 5 4 33 33 H 1.09007 * 109.51903 * 62.47515 * 7 5 4 34 34 H 1.09002 * 109.50460 * 297.71044 * 8 7 5 35 35 H 1.09003 * 109.50241 * 177.59784 * 8 7 5 36 36 H 1.08993 * 109.46063 * 180.80377 * 9 8 7 37 37 H 1.08999 * 109.46203 * 60.83239 * 9 8 7 38 38 H 1.09006 * 109.47140 * 165.79193 * 11 10 9 39 39 H 1.08994 * 109.46961 * 285.78895 * 11 10 9 40 40 H 1.08999 * 109.46683 * 299.99832 * 12 11 10 41 41 H 1.08995 * 109.47361 * 59.99470 * 12 11 10 42 42 H 1.09001 * 109.46426 * 299.99901 * 13 12 11 43 43 H 1.08994 * 109.47080 * 59.99401 * 13 12 11 44 44 H 1.08999 * 109.46683 * 299.99599 * 14 13 12 45 45 H 1.08995 * 109.47361 * 59.99238 * 14 13 12 46 46 H 0.96997 * 120.00690 * 180.02562 * 18 17 15 47 47 H 1.08999 * 109.46500 * 178.23954 * 23 10 9 48 48 H 1.09004 * 109.45191 * 58.27467 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4240 0.0006 5 6 3.9596 2.8796 0.0012 6 1 3.5107 3.4072 0.8429 7 6 3.5398 3.5544 -1.3076 8 6 4.0670 4.9918 -1.3235 9 6 5.5885 4.9739 -1.1609 10 7 5.9389 4.3191 0.1059 11 6 7.3828 4.4062 0.3619 12 6 7.8638 5.8329 0.0897 13 6 9.3678 5.9236 0.3557 14 6 9.8489 7.3501 0.0829 15 6 11.3301 7.4395 0.3455 16 1 11.8739 6.5663 0.6744 17 6 11.9911 8.6360 0.1657 18 7 11.3289 9.6995 -0.2344 19 14 13.8271 8.7470 0.4919 20 1 14.5462 7.8024 -0.4001 21 1 14.2940 10.1316 0.2270 22 1 14.1004 8.3955 1.9085 23 6 5.4842 2.9229 0.1255 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6442 1.9012 0.7814 30 1 3.8654 0.9200 -0.8892 31 1 3.8647 0.9202 0.8907 32 1 3.9566 3.0041 -2.1511 33 1 2.4522 3.5644 -1.3797 34 1 3.6197 5.5526 -0.5028 35 1 3.8079 5.4640 -2.2712 36 1 5.9655 5.9966 -1.1575 37 1 6.0359 4.4248 -1.9894 38 1 7.5838 4.1471 1.4014 39 1 7.9104 3.7136 -0.2937 40 1 7.6627 6.0919 -0.9498 41 1 7.3360 6.5255 0.7453 42 1 9.5691 5.6643 1.3951 43 1 9.8951 5.2310 -0.3002 44 1 9.6475 7.6088 -0.9566 45 1 9.3215 8.0430 0.7385 46 1 11.7939 10.5412 -0.3612 47 1 5.7856 2.4559 1.0632 48 1 5.9322 2.3835 -0.7091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385210790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:06 Heat of formation + Delta-G solvation = -52.034689 kcal Electronic energy + Delta-G solvation = -20434.093641 eV Core-core repulsion = 17521.373846 eV Total energy + Delta-G solvation = -2912.719795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.37820 -37.84086 -36.53124 -35.06045 -33.55369 -32.74175 -30.58909 -29.66979 -26.81914 -25.97958 -24.42368 -23.34446 -22.89894 -22.14390 -21.13763 -20.59256 -18.41625 -17.11058 -16.62342 -16.50599 -16.42042 -16.31750 -15.56505 -15.38455 -15.02002 -14.81569 -14.66586 -14.38335 -13.98739 -13.82428 -13.44513 -13.27106 -13.18438 -12.97458 -12.81366 -12.49643 -12.47939 -12.30071 -12.24463 -12.05354 -11.97155 -11.94005 -11.54073 -11.43803 -11.34141 -11.19366 -11.07206 -10.87742 -10.55149 -9.34534 -9.23272 -8.19841 -6.31558 1.39086 1.42665 1.50642 2.40674 2.85158 3.12528 3.32243 3.82520 3.89154 3.98488 4.10333 4.13356 4.21495 4.33727 4.35681 4.45096 4.49734 4.52310 4.58820 4.62962 4.63070 4.68772 4.74894 4.83099 4.85557 4.86474 4.97739 5.00548 5.08328 5.13710 5.17458 5.22142 5.23502 5.28048 5.32684 5.35046 5.44491 5.53108 5.54584 5.76820 5.86099 6.07015 6.14189 6.22679 6.26735 6.48167 6.85549 7.37588 8.91764 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.059058 B = 0.002420 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.992762 B =11569.228102 C =11906.621719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.694 5.694 4 C 0.072 3.928 5 C -0.073 4.073 6 H 0.073 0.927 7 C -0.098 4.098 8 C -0.114 4.114 9 C 0.046 3.954 10 N -0.545 5.545 11 C 0.066 3.934 12 C -0.109 4.109 13 C -0.097 4.097 14 C 0.024 3.976 15 C -0.546 4.546 16 H 0.060 0.940 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.266 1.266 23 C 0.061 3.939 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.344 0.656 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.049 0.951 44 H -0.012 1.012 45 H -0.011 1.011 46 H 0.264 0.736 47 H 0.077 0.923 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.556 -19.385 0.017 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.326 5.326 4 C -0.058 4.058 5 C -0.092 4.092 6 H 0.092 0.908 7 C -0.135 4.135 8 C -0.152 4.152 9 C -0.082 4.082 10 N -0.269 5.269 11 C -0.061 4.061 12 C -0.146 4.146 13 C -0.135 4.135 14 C -0.013 4.013 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.067 4.067 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.163 0.837 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.007 0.993 45 H 0.008 0.992 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -20.836 -18.911 -0.335 28.140 hybrid contribution 1.723 -0.087 0.291 1.750 sum -19.113 -18.998 -0.044 26.949 Atomic orbital electron populations 1.21734 0.94174 1.02269 1.02237 1.21939 0.96317 0.89019 1.00377 1.60472 1.07581 1.14096 1.50426 1.21845 0.87925 0.95564 1.00489 1.21072 0.93642 0.95489 0.98972 0.90844 1.21444 1.01383 0.94325 0.96369 1.21600 0.93617 0.97957 1.02047 1.22241 0.97181 0.99309 0.89481 1.61976 1.14603 1.16368 1.33980 1.22040 0.86869 0.95986 1.01234 1.21632 0.95409 0.96589 1.01007 1.21406 0.94544 0.97227 1.00305 1.19007 0.94847 0.92917 0.94559 1.21712 0.95335 0.96069 1.45293 0.92183 1.26033 1.03751 0.95422 0.94886 1.70098 1.38157 1.01306 1.47823 0.85477 0.79001 0.77280 0.79144 1.19141 1.20747 1.19118 1.22107 0.95685 0.88019 1.00900 0.92537 0.92460 0.91300 0.91436 0.95207 0.83748 0.91401 0.94841 0.93025 0.90451 0.91690 0.90873 0.91212 0.95571 0.90353 0.94962 0.92607 0.92551 0.92931 0.93264 0.99312 0.99224 0.92770 0.90486 0.95161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.17 71.98 0.73 -0.69 16 2 C 0.05 0.62 6.40 86.30 0.55 1.17 16 3 N -0.69 -9.49 6.01 -513.92 -3.09 -12.58 16 4 C 0.07 1.05 5.08 86.31 0.44 1.49 16 5 C -0.07 -1.27 2.49 -10.74 -0.03 -1.30 16 6 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 7 C -0.10 -1.78 5.14 30.67 0.16 -1.62 16 8 C -0.11 -2.39 6.09 30.64 0.19 -2.20 16 9 C 0.05 1.16 4.85 86.33 0.42 1.58 16 10 N -0.54 -14.09 4.81 -896.39 -4.31 -18.40 16 11 C 0.07 1.90 5.27 86.30 0.46 2.36 16 12 C -0.11 -3.83 4.46 30.59 0.14 -3.69 16 13 C -0.10 -4.09 5.15 30.59 0.16 -3.94 16 14 C 0.02 1.30 4.97 29.85 0.15 1.45 16 15 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 17 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 18 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 19 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 C 0.06 1.27 4.71 86.32 0.41 1.68 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.34 4.27 8.73 -89.69 -0.78 3.49 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.03 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.36 7.83 -2.38 -0.02 1.34 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.99 5.81 -2.39 -0.01 1.98 16 37 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 40 H 0.06 1.99 6.21 -2.39 -0.01 1.98 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 44 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 45 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 46 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 47 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 48 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -64.22 369.87 -0.54 -64.76 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.09 Total: 12.27 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 4.46 Total: -35.25 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -7.11 Total: -88.86 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.22 -0.54 -64.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385210790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.722 kcal (2) G-P(sol) polarization free energy of solvation -64.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds