Wall clock time and date at job start Mon Mar 30 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46905 * 109.46579 * 185.00135 * 4 2 1 6 6 C 1.46845 * 110.99863 * 294.20589 * 5 4 2 7 7 C 1.53035 * 109.52480 * 174.16803 * 6 5 4 8 8 C 1.53119 * 109.27990 * 59.17570 * 7 6 5 9 9 C 1.53115 * 109.16243 * 302.34852 * 8 7 6 10 10 C 1.46850 * 110.99602 * 170.00121 * 5 4 2 11 11 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 12 12 C 1.46894 * 111.00220 * 274.99988 * 11 2 1 13 13 C 1.53001 * 109.47508 * 179.97438 * 12 11 2 14 14 C 1.52996 * 109.47238 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46949 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47069 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00030 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99671 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00623 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99784 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46783 * 89.99939 * 20 18 16 22 22 H 1.48500 * 109.47105 * 210.00165 * 20 18 16 23 23 H 1.48500 * 109.47097 * 330.00338 * 20 18 16 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 28 28 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 29 29 H 1.09005 * 109.46286 * 294.18079 * 6 5 4 30 30 H 1.08997 * 109.46422 * 54.14867 * 6 5 4 31 31 H 1.09003 * 109.49771 * 299.24069 * 7 6 5 32 32 H 1.08995 * 109.50835 * 179.12362 * 7 6 5 33 33 H 1.09002 * 109.51880 * 182.44327 * 8 7 6 34 34 H 1.08997 * 109.52175 * 62.25694 * 8 7 6 35 35 H 1.09003 * 109.50692 * 297.71558 * 9 8 7 36 36 H 1.09001 * 109.50489 * 177.59542 * 9 8 7 37 37 H 1.08997 * 109.46114 * 305.84939 * 10 5 4 38 38 H 1.09001 * 109.46691 * 65.81912 * 10 5 4 39 39 H 1.00900 * 110.99934 * 38.95495 * 11 2 1 40 40 H 1.08998 * 109.47346 * 299.99916 * 12 11 2 41 41 H 1.09007 * 109.47035 * 60.00148 * 12 11 2 42 42 H 1.08998 * 109.46853 * 300.00345 * 13 12 11 43 43 H 1.09007 * 109.46934 * 59.99579 * 13 12 11 44 44 H 1.08998 * 109.47509 * 299.99978 * 14 13 12 45 45 H 1.08999 * 109.47418 * 60.00588 * 14 13 12 46 46 H 1.08996 * 109.47657 * 300.00574 * 15 14 13 47 47 H 1.09007 * 109.46720 * 60.00328 * 15 14 13 48 48 H 0.96989 * 120.00324 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.1305 0.4993 -1.2659 7 6 5.6404 0.3642 -1.0561 8 6 6.2200 -0.5568 -2.1333 9 6 5.5168 -1.9152 -2.0646 10 6 4.0105 -1.7140 -2.2452 11 7 2.0197 -0.6925 1.1994 12 6 2.0825 0.2225 2.3468 13 6 2.5951 -0.5332 3.5745 14 6 2.6611 0.4200 4.7694 15 6 3.1731 -0.3360 5.9971 16 6 3.2387 0.6031 7.1740 17 1 2.9443 1.6356 7.0580 18 6 3.6747 0.1440 8.3987 19 7 4.0337 -1.1133 8.5400 20 14 3.7554 1.3078 9.8577 21 1 2.4616 1.2789 10.5860 22 1 4.8468 0.8825 10.7704 23 1 4.0218 2.6872 9.3765 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.6053 -1.7197 -1.2952 28 1 1.7516 -0.1583 -2.1370 29 1 3.9376 0.9369 -2.2454 30 1 3.7125 1.1431 -0.4920 31 1 5.8343 -0.0606 -0.0712 32 1 6.1071 1.3466 -1.1276 33 1 7.2882 -0.6905 -1.9619 34 1 6.0606 -0.1133 -3.1161 35 1 5.7088 -2.3759 -1.0955 36 1 5.8952 -2.5614 -2.8567 37 1 3.5053 -2.6778 -2.1825 38 1 3.8182 -1.2661 -3.2201 39 1 1.4496 -1.4979 1.4100 40 1 2.7589 1.0461 2.1182 41 1 1.0870 0.6162 2.5525 42 1 1.9184 -1.3566 3.8029 43 1 3.5904 -0.9273 3.3690 44 1 3.3380 1.2431 4.5406 45 1 1.6660 0.8144 4.9750 46 1 2.4959 -1.1589 6.2257 47 1 4.1682 -0.7307 5.7918 48 1 4.3408 -1.4362 9.4015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385285672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:47 Heat of formation + Delta-G solvation = -32.379906 kcal Electronic energy + Delta-G solvation = -20876.795678 eV Core-core repulsion = 17964.928178 eV Total energy + Delta-G solvation = -2911.867500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.28136 -37.18306 -34.79721 -33.27832 -32.18313 -30.90192 -30.25363 -27.40653 -26.47250 -24.20035 -23.37709 -22.91441 -21.31057 -20.61276 -19.80558 -19.66539 -16.39179 -16.12026 -15.61944 -15.18264 -15.00115 -14.66728 -14.41408 -14.23828 -14.03485 -13.63065 -13.33937 -13.13898 -12.68399 -12.46102 -12.45048 -12.14346 -11.99299 -11.75289 -11.53782 -11.27096 -11.16632 -11.04509 -10.93025 -10.78039 -10.49504 -10.44902 -10.40647 -10.33943 -10.26608 -9.54729 -9.18523 -8.93632 -8.27853 -8.20848 -8.07306 -5.92861 -3.94885 3.35782 3.41691 3.45408 3.79003 4.30876 4.51986 4.65863 4.72265 4.82923 4.88574 5.02120 5.13271 5.19472 5.30870 5.32119 5.41816 5.42439 5.48092 5.50483 5.52510 5.62679 5.64674 5.68012 5.75756 5.83587 5.87003 5.88516 5.97455 6.06440 6.08229 6.11844 6.28118 6.32479 6.39363 6.62292 6.93700 7.05508 7.09003 7.13136 7.21429 7.39146 7.64343 7.77242 7.94292 8.09089 8.51877 9.12842 9.68637 11.18504 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.003157 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.872475 B = 8867.222672 C = 9611.907223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.074 0.926 4 C 0.070 3.930 5 N -0.513 5.513 6 C 0.060 3.940 7 C -0.117 4.117 8 C -0.120 4.120 9 C -0.116 4.116 10 C 0.057 3.943 11 N -0.664 5.664 12 C 0.063 3.937 13 C -0.113 4.113 14 C -0.108 4.108 15 C 0.021 3.979 16 C -0.519 4.519 17 H 0.053 0.947 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.021 0.979 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.023 0.977 39 H 0.336 0.664 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.014 0.986 47 H 0.016 0.984 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 0.601 -24.843 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.025 4.025 3 H 0.092 0.908 4 C -0.059 4.059 5 N -0.237 5.237 6 C -0.068 4.068 7 C -0.155 4.155 8 C -0.158 4.158 9 C -0.154 4.154 10 C -0.071 4.071 11 N -0.293 5.293 12 C -0.066 4.066 13 C -0.151 4.151 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.041 0.959 39 H 0.154 0.846 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.032 0.968 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.443 0.353 -24.430 24.475 hybrid contribution -1.183 1.057 0.312 1.617 sum -2.626 1.410 -24.118 24.301 Atomic orbital electron populations 1.22503 0.97436 1.02182 1.02161 1.21563 0.91721 0.97910 0.91326 0.90806 1.22085 0.87990 1.00341 0.95475 1.61739 1.04505 1.11177 1.46238 1.22050 0.95086 0.90475 0.99154 1.21571 0.94515 0.99253 1.00172 1.21565 0.99611 0.95938 0.98652 1.21568 0.94254 0.97100 1.02489 1.22065 0.95979 0.97088 0.91960 1.60470 1.56736 1.09179 1.02965 1.22053 0.98547 0.95505 0.90504 1.21600 1.01415 0.98562 0.93530 1.21582 0.99918 0.97869 0.95284 1.19090 0.96264 0.95327 0.90906 1.21303 1.43331 0.96412 0.94697 0.92826 1.25034 0.95571 0.95079 0.98872 1.69968 1.44878 1.14394 1.24336 0.86622 0.77609 0.81268 0.82663 1.20749 1.21246 1.19914 0.92470 0.92345 0.92277 0.91011 0.95384 0.96068 0.90641 0.90492 0.91998 0.92000 0.92821 0.90713 0.92053 0.91074 0.95866 0.84604 0.91717 0.96172 0.92972 0.91613 0.93572 0.93879 0.96792 0.96598 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.16 37.16 0.34 -1.32 16 2 C 0.09 0.90 2.37 -67.71 -0.16 0.74 16 3 H 0.07 0.82 6.32 -51.93 -0.33 0.49 16 4 C 0.07 0.69 4.66 -3.82 -0.02 0.67 16 5 N -0.51 -5.58 4.38 -234.67 -1.03 -6.61 16 6 C 0.06 0.63 5.29 -3.84 -0.02 0.61 16 7 C -0.12 -1.19 6.09 -26.65 -0.16 -1.36 16 8 C -0.12 -1.08 6.00 -26.61 -0.16 -1.24 16 9 C -0.12 -1.07 6.09 -26.65 -0.16 -1.23 16 10 C 0.06 0.54 5.46 -3.83 -0.02 0.52 16 11 N -0.66 -8.42 5.97 -106.73 -0.64 -9.06 16 12 C 0.06 0.91 5.48 -3.83 -0.02 0.89 16 13 C -0.11 -2.01 5.47 -26.73 -0.15 -2.15 16 14 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16 20 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 26 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 27 H 0.07 0.69 7.99 -51.93 -0.41 0.27 16 28 H 0.03 0.26 8.12 -51.93 -0.42 -0.17 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.86 6.32 -51.93 -0.33 0.53 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.65 8.02 -51.93 -0.42 0.24 16 38 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.34 4.14 8.47 -39.29 -0.33 3.80 16 40 H 0.06 0.96 8.06 -51.93 -0.42 0.55 16 41 H 0.02 0.29 7.44 -51.93 -0.39 -0.10 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -30.45 369.77 -11.33 -41.79 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -9.74 Total: -2.03 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -1.22 Total: -19.85 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.93 Total: -42.58 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.45 -11.33 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385285672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.409 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds