Wall clock time and date at job start Mon Mar 30 2020 06:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 N 1.46905 * 109.46579 * 185.00135 * 4 2 1 6 6 C 1.46845 * 110.99863 * 294.20589 * 5 4 2 7 7 C 1.53035 * 109.52480 * 174.16803 * 6 5 4 8 8 C 1.53119 * 109.27990 * 59.17570 * 7 6 5 9 9 C 1.53115 * 109.16243 * 302.34852 * 8 7 6 10 10 C 1.46850 * 110.99602 * 170.00121 * 5 4 2 11 11 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 12 12 C 1.46894 * 111.00220 * 274.99988 * 11 2 1 13 13 C 1.53001 * 109.47508 * 179.97438 * 12 11 2 14 14 C 1.52996 * 109.47238 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46949 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47069 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00030 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99671 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00623 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99784 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46783 * 89.99939 * 20 18 16 22 22 H 1.48500 * 109.47105 * 210.00165 * 20 18 16 23 23 H 1.48500 * 109.47097 * 330.00338 * 20 18 16 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 28 28 H 1.08997 * 109.47298 * 65.00333 * 4 2 1 29 29 H 1.09005 * 109.46286 * 294.18079 * 6 5 4 30 30 H 1.08997 * 109.46422 * 54.14867 * 6 5 4 31 31 H 1.09003 * 109.49771 * 299.24069 * 7 6 5 32 32 H 1.08995 * 109.50835 * 179.12362 * 7 6 5 33 33 H 1.09002 * 109.51880 * 182.44327 * 8 7 6 34 34 H 1.08997 * 109.52175 * 62.25694 * 8 7 6 35 35 H 1.09003 * 109.50692 * 297.71558 * 9 8 7 36 36 H 1.09001 * 109.50489 * 177.59542 * 9 8 7 37 37 H 1.08997 * 109.46114 * 305.84939 * 10 5 4 38 38 H 1.09001 * 109.46691 * 65.81912 * 10 5 4 39 39 H 1.00900 * 110.99934 * 38.95495 * 11 2 1 40 40 H 1.08998 * 109.47346 * 299.99916 * 12 11 2 41 41 H 1.09007 * 109.47035 * 60.00148 * 12 11 2 42 42 H 1.08998 * 109.46853 * 300.00345 * 13 12 11 43 43 H 1.09007 * 109.46934 * 59.99579 * 13 12 11 44 44 H 1.08998 * 109.47509 * 299.99978 * 14 13 12 45 45 H 1.08999 * 109.47418 * 60.00588 * 14 13 12 46 46 H 1.08996 * 109.47657 * 300.00574 * 15 14 13 47 47 H 1.09007 * 109.46720 * 60.00328 * 15 14 13 48 48 H 0.96989 * 120.00324 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.1305 0.4993 -1.2659 7 6 5.6404 0.3642 -1.0561 8 6 6.2200 -0.5568 -2.1333 9 6 5.5168 -1.9152 -2.0646 10 6 4.0105 -1.7140 -2.2452 11 7 2.0197 -0.6925 1.1994 12 6 2.0825 0.2225 2.3468 13 6 2.5951 -0.5332 3.5745 14 6 2.6611 0.4200 4.7694 15 6 3.1731 -0.3360 5.9971 16 6 3.2387 0.6031 7.1740 17 1 2.9443 1.6356 7.0580 18 6 3.6747 0.1440 8.3987 19 7 4.0337 -1.1133 8.5400 20 14 3.7554 1.3078 9.8577 21 1 2.4616 1.2789 10.5860 22 1 4.8468 0.8825 10.7704 23 1 4.0218 2.6872 9.3765 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.6053 -1.7197 -1.2952 28 1 1.7516 -0.1583 -2.1370 29 1 3.9376 0.9369 -2.2454 30 1 3.7125 1.1431 -0.4920 31 1 5.8343 -0.0606 -0.0712 32 1 6.1071 1.3466 -1.1276 33 1 7.2882 -0.6905 -1.9619 34 1 6.0606 -0.1133 -3.1161 35 1 5.7088 -2.3759 -1.0955 36 1 5.8952 -2.5614 -2.8567 37 1 3.5053 -2.6778 -2.1825 38 1 3.8182 -1.2661 -3.2201 39 1 1.4496 -1.4979 1.4100 40 1 2.7589 1.0461 2.1182 41 1 1.0870 0.6162 2.5525 42 1 1.9184 -1.3566 3.8029 43 1 3.5904 -0.9273 3.3690 44 1 3.3380 1.2431 4.5406 45 1 1.6660 0.8144 4.9750 46 1 2.4959 -1.1589 6.2257 47 1 4.1682 -0.7307 5.7918 48 1 4.3408 -1.4362 9.4015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385285672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:46 Heat of formation + Delta-G solvation = -50.670766 kcal Electronic energy + Delta-G solvation = -20877.588829 eV Core-core repulsion = 17964.928178 eV Total energy + Delta-G solvation = -2912.660651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.08518 -38.20864 -36.39084 -34.76723 -33.64626 -31.73263 -31.54610 -29.03723 -27.24269 -25.97940 -24.20785 -23.72936 -22.87617 -21.92550 -21.06217 -20.50502 -18.42231 -17.18404 -16.65806 -16.48507 -16.36264 -15.85890 -15.49690 -15.22115 -15.06431 -14.55635 -14.44257 -14.26005 -14.08908 -13.76938 -13.54572 -13.28743 -13.15745 -13.02240 -12.80637 -12.71501 -12.46035 -12.21097 -12.11628 -12.07271 -12.04852 -11.82358 -11.55741 -11.35365 -11.29067 -11.19335 -11.07224 -10.91540 -10.54725 -9.08611 -8.98309 -8.18936 -6.30702 1.39554 1.41643 1.52856 2.41503 3.01143 3.13435 3.33142 3.87450 3.96361 4.06116 4.10906 4.18011 4.20736 4.33693 4.36625 4.42431 4.53828 4.57700 4.61725 4.65942 4.69132 4.73770 4.76732 4.83706 4.89969 4.93738 4.97845 5.01481 5.08202 5.11420 5.12772 5.25819 5.28779 5.30756 5.30926 5.36638 5.40050 5.53802 5.57100 5.79727 5.88000 6.21125 6.27014 6.36087 6.38792 6.66406 6.86875 7.38532 8.93026 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.003157 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.872475 B = 8867.222672 C = 9611.907223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.073 3.927 5 N -0.532 5.532 6 C 0.063 3.937 7 C -0.117 4.117 8 C -0.117 4.117 9 C -0.115 4.115 10 C 0.058 3.942 11 N -0.671 5.671 12 C 0.078 3.922 13 C -0.101 4.101 14 C -0.096 4.096 15 C 0.024 3.976 16 C -0.545 4.545 17 H 0.060 0.940 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.263 1.263 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.030 0.970 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.339 0.661 40 H 0.061 0.939 41 H 0.027 0.973 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.049 0.951 46 H -0.011 1.011 47 H -0.013 1.013 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 1.713 -25.959 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.022 4.022 3 H 0.086 0.914 4 C -0.055 4.055 5 N -0.257 5.257 6 C -0.065 4.065 7 C -0.155 4.155 8 C -0.155 4.155 9 C -0.153 4.153 10 C -0.070 4.070 11 N -0.301 5.301 12 C -0.051 4.051 13 C -0.140 4.140 14 C -0.134 4.134 15 C -0.013 4.013 16 C -0.583 4.583 17 H 0.078 0.922 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.187 1.187 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.157 0.843 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.007 0.993 47 H 0.006 0.994 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.126 1.469 -25.569 25.699 hybrid contribution -0.955 0.662 0.638 1.326 sum -3.081 2.131 -24.930 25.210 Atomic orbital electron populations 1.22421 0.96057 1.02670 1.02457 1.21585 0.92753 0.97397 0.90493 0.91412 1.22063 0.87463 1.00618 0.95383 1.61733 1.05193 1.11486 1.47242 1.21996 0.95012 0.90343 0.99153 1.21558 0.94776 0.99884 0.99319 1.21548 0.99739 0.95549 0.98621 1.21564 0.94361 0.97389 1.02006 1.22084 0.96011 0.96982 0.91939 1.60411 1.57563 1.09167 1.02962 1.21771 0.98544 0.95078 0.89727 1.21415 1.00818 0.97994 0.93723 1.21390 0.99811 0.97890 0.94303 1.19015 0.94312 0.94898 0.93122 1.21746 1.43664 0.97042 0.95846 0.92223 1.26036 0.94841 0.96916 1.02294 1.70107 1.45497 1.16495 1.25395 0.85422 0.78015 0.79082 0.78377 1.19652 1.20647 1.18686 0.90982 0.91768 0.93135 0.90648 0.94150 0.95165 0.91803 0.92979 0.91148 0.91584 0.91713 0.92668 0.90384 0.90834 0.94987 0.84294 0.92004 0.95441 0.93067 0.93090 0.93352 0.93204 0.99259 0.99419 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.16 71.98 0.66 -2.19 16 2 C 0.09 1.72 2.37 44.92 0.11 1.82 16 3 H 0.07 1.42 6.32 -2.39 -0.02 1.41 16 4 C 0.07 1.31 4.66 86.30 0.40 1.71 16 5 N -0.53 -11.00 4.38 -896.35 -3.93 -14.93 16 6 C 0.06 1.27 5.29 86.33 0.46 1.72 16 7 C -0.12 -2.34 6.09 30.65 0.19 -2.16 16 8 C -0.12 -1.96 6.00 30.67 0.18 -1.78 16 9 C -0.12 -1.99 6.09 30.65 0.19 -1.81 16 10 C 0.06 1.01 5.46 86.33 0.47 1.48 16 11 N -0.67 -16.46 5.97 -491.58 -2.94 -19.40 16 12 C 0.08 2.21 5.48 86.30 0.47 2.69 16 13 C -0.10 -3.63 5.47 30.59 0.17 -3.46 16 14 C -0.10 -4.12 5.15 30.59 0.16 -3.96 16 15 C 0.02 1.31 4.97 29.85 0.15 1.46 16 16 C -0.55 -32.28 9.11 25.60 0.23 -32.04 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.93 -58.69 13.29 21.45 0.28 -58.41 16 20 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 26 H 0.05 0.91 7.45 -2.39 -0.02 0.89 16 27 H 0.08 1.30 7.99 -2.39 -0.02 1.28 16 28 H 0.04 0.64 8.12 -2.39 -0.02 0.62 16 29 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.06 1.42 6.32 -2.39 -0.02 1.40 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.24 8.02 -2.39 -0.02 1.22 16 38 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.34 8.01 8.47 -89.69 -0.76 7.25 16 40 H 0.06 1.80 8.06 -2.39 -0.02 1.78 16 41 H 0.03 0.75 7.44 -2.38 -0.02 0.73 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 43 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 46 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 47 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 48 H 0.26 15.47 8.31 -92.72 -0.77 14.69 16 Total: -1.00 -65.61 369.77 -0.14 -65.75 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.11 Total: 15.89 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 4.30 Total: -36.26 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -6.58 Total: -92.74 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -65.61 -0.14 -65.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385285672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.081 kcal (2) G-P(sol) polarization free energy of solvation -65.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds