Wall clock time and date at job start Mon Mar 30 2020 07:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47346 * 2 1 4 4 C 1.46898 * 110.99482 * 66.04580 * 3 2 1 5 5 C 1.53008 * 109.46673 * 199.83532 * 4 3 2 6 6 C 1.46898 * 111.00110 * 189.99766 * 3 2 1 7 7 H 1.08995 * 110.87696 * 189.67648 * 6 3 2 8 8 C 1.55142 * 110.98843 * 65.83609 * 6 3 2 9 9 C 1.54318 * 103.01958 * 206.21511 * 8 6 3 10 10 N 1.47437 * 107.23176 * 22.28622 * 9 8 6 11 11 C 1.46894 * 111.00227 * 123.25757 * 10 9 8 12 12 C 1.53004 * 109.47369 * 69.87186 * 11 10 9 13 13 C 1.52992 * 109.47429 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47429 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47272 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00240 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99714 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99829 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00085 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47350 * 90.00337 * 19 17 15 21 21 H 1.48506 * 109.47115 * 210.00199 * 19 17 15 22 22 H 1.48501 * 109.47083 * 329.99825 * 19 17 15 23 23 C 1.47849 * 108.56780 * 0.98809 * 10 9 8 24 24 H 1.08998 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47002 * 299.99950 * 1 2 3 26 26 H 1.08998 * 109.46913 * 59.99794 * 1 2 3 27 27 H 1.09003 * 109.47002 * 240.00050 * 2 1 3 28 28 H 1.08998 * 109.46913 * 120.00205 * 2 1 3 29 29 H 1.08995 * 109.47536 * 319.83354 * 4 3 2 30 30 H 1.09002 * 109.47196 * 79.84253 * 4 3 2 31 31 H 1.09004 * 109.47053 * 184.79656 * 5 4 3 32 32 H 1.08998 * 109.47171 * 304.79869 * 5 4 3 33 33 H 1.09006 * 109.46959 * 64.80098 * 5 4 3 34 34 H 1.09008 * 110.70348 * 87.83639 * 8 6 3 35 35 H 1.08994 * 110.70872 * 324.60344 * 8 6 3 36 36 H 1.08999 * 109.88846 * 262.88001 * 9 8 6 37 37 H 1.08997 * 109.88569 * 141.69258 * 9 8 6 38 38 H 1.08998 * 109.47196 * 309.87150 * 11 10 9 39 39 H 1.09001 * 109.47859 * 189.87271 * 11 10 9 40 40 H 1.08998 * 109.46990 * 59.99838 * 12 11 10 41 41 H 1.09001 * 109.47160 * 300.00527 * 12 11 10 42 42 H 1.09001 * 109.47114 * 300.00229 * 13 12 11 43 43 H 1.08998 * 109.47433 * 59.99783 * 13 12 11 44 44 H 1.09001 * 109.47160 * 300.00201 * 14 13 12 45 45 H 1.08998 * 109.46731 * 59.99997 * 14 13 12 46 46 H 0.96996 * 120.00024 * 180.02562 * 18 17 15 47 47 H 1.09000 * 110.37165 * 94.73378 * 23 10 9 48 48 H 1.09004 * 110.37264 * 217.07694 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0668 1.2533 5 6 1.7356 3.5813 1.0453 6 6 3.4685 1.4311 -0.2381 7 1 3.8580 2.4351 -0.0700 8 6 3.8131 0.9334 -1.6665 9 6 5.2578 0.4128 -1.5143 10 7 5.4642 0.1084 -0.0865 11 6 5.8746 -1.2897 0.0997 12 6 7.2951 -1.4799 -0.4360 13 6 7.7224 -2.9362 -0.2426 14 6 9.1427 -3.1266 -0.7788 15 6 9.5637 -4.5609 -0.5877 16 1 8.8864 -5.2661 -0.1293 17 6 10.8143 -4.9726 -0.9973 18 7 11.1819 -6.2242 -0.8301 19 14 11.9867 -3.7524 -1.7883 20 1 12.8156 -3.1096 -0.7371 21 1 12.8688 -4.4642 -2.7478 22 1 11.2079 -2.7135 -2.5089 23 6 4.2096 0.3938 0.6418 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.6606 1.7843 1.5514 30 1 2.3740 1.7765 2.0334 31 1 1.5599 4.0864 1.9952 32 1 2.7203 3.8537 0.6656 33 1 0.9730 3.8826 0.3271 34 1 3.7730 1.7555 -2.3812 35 1 3.1427 0.1279 -1.9662 36 1 5.9637 1.1785 -1.8360 37 1 5.3909 -0.4908 -2.1091 38 1 5.1915 -1.9441 -0.4417 39 1 5.8504 -1.5373 1.1610 40 1 7.9783 -0.8255 0.1054 41 1 7.3195 -1.2324 -1.4972 42 1 7.6980 -3.1842 0.8186 43 1 7.0392 -3.5904 -0.7842 44 1 9.1667 -2.8788 -1.8400 45 1 9.8261 -2.4725 -0.2374 46 1 12.0618 -6.5138 -1.1178 47 1 3.6140 -0.5136 0.7418 48 1 4.4279 0.8155 1.6230 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395326604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:51 Heat of formation + Delta-G solvation = -7.788337 kcal Electronic energy + Delta-G solvation = -20963.283892 eV Core-core repulsion = 18052.482763 eV Total energy + Delta-G solvation = -2910.801129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.09137 -37.29684 -34.81553 -32.67708 -32.15127 -31.28213 -29.57451 -28.71562 -26.89576 -24.61958 -23.47634 -22.56040 -22.02979 -20.27386 -20.00933 -19.36795 -16.70821 -16.61699 -16.48462 -15.43682 -15.08506 -14.84906 -14.49499 -14.24058 -14.06620 -13.67901 -13.39658 -13.00867 -12.75759 -12.60420 -12.51970 -12.15847 -11.98389 -11.87268 -11.74810 -11.67152 -11.60332 -11.37705 -11.31427 -10.99686 -10.83232 -10.71788 -10.59837 -10.44071 -9.85320 -9.64578 -9.47119 -9.12411 -8.57410 -8.50018 -8.29561 -6.00876 -3.98334 3.33905 3.40775 3.42559 3.45654 4.06611 4.41384 4.48963 4.49115 4.61326 4.76522 4.86711 4.92066 5.05452 5.13054 5.17859 5.22301 5.27372 5.30962 5.33964 5.36702 5.43293 5.53131 5.57738 5.63307 5.67509 5.75039 5.80972 5.83414 5.86346 5.88703 5.95111 6.02612 6.08952 6.13897 6.41222 6.68572 6.74209 6.79686 6.80813 6.94276 6.99912 7.15181 7.37525 7.50535 7.84560 8.58552 9.04397 9.62254 11.12783 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.037890 B = 0.002904 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.799740 B = 9638.712264 C = 9931.911307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 N -0.526 5.526 4 C 0.043 3.957 5 C -0.145 4.145 6 C 0.075 3.925 7 H 0.097 0.903 8 C -0.133 4.133 9 C 0.040 3.960 10 N -0.526 5.526 11 C 0.053 3.947 12 C -0.115 4.115 13 C -0.101 4.101 14 C -0.013 4.013 15 C -0.519 4.519 16 H 0.070 0.930 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.265 1.265 23 C 0.008 3.992 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.014 0.986 45 H 0.011 0.989 46 H 0.262 0.738 47 H 0.052 0.948 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.598 18.506 1.870 28.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 N -0.250 5.250 4 C -0.084 4.084 5 C -0.203 4.203 6 C -0.034 4.034 7 H 0.115 0.885 8 C -0.172 4.172 9 C -0.089 4.089 10 N -0.251 5.251 11 C -0.075 4.075 12 C -0.152 4.152 13 C -0.140 4.140 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.088 0.912 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.122 4.122 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.032 0.968 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.297 18.938 1.655 28.548 hybrid contribution 0.555 -0.541 -0.014 0.775 sum -20.742 18.397 1.641 27.774 Atomic orbital electron populations 1.21827 0.94841 1.01594 1.02361 1.22196 0.95870 0.89376 1.01173 1.62195 1.12564 1.15611 1.34622 1.22167 1.00951 0.95077 0.90230 1.21758 1.02399 0.94704 1.01456 1.22917 0.86313 0.99363 0.94820 0.88455 1.22851 0.96474 1.01228 0.96631 1.22875 0.95647 1.00958 0.89372 1.63531 1.29676 1.23097 1.08756 1.22385 0.97362 0.86777 1.00979 1.21673 0.94373 0.98652 1.00550 1.21426 0.98808 0.93059 1.00675 1.19562 0.92318 0.97382 0.95814 1.21193 1.00681 0.93933 1.39938 0.91166 1.25054 0.98069 0.95081 0.95465 1.69923 1.20541 1.15881 1.48199 0.86754 0.81007 0.81707 0.79682 1.20307 1.21464 1.18982 1.23720 0.90808 0.98908 0.98758 0.92270 0.92666 0.91885 0.90496 0.94389 0.90604 0.94459 0.92508 0.92571 0.92127 0.90439 0.91105 0.90431 0.92117 0.94961 0.91189 0.91719 0.92625 0.92933 0.93137 0.96776 0.97092 0.92814 0.92990 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.88 37.16 0.37 -0.68 16 2 C 0.04 0.35 4.52 -3.82 -0.02 0.33 16 3 N -0.53 -4.55 4.44 -224.10 -1.00 -5.55 16 4 C 0.04 0.33 5.50 -3.82 -0.02 0.31 16 5 C -0.15 -1.00 10.08 37.16 0.37 -0.62 16 6 C 0.08 0.71 2.95 -65.58 -0.19 0.52 16 7 H 0.10 0.94 6.63 -51.93 -0.34 0.60 16 8 C -0.13 -1.29 6.47 -24.91 -0.16 -1.45 16 9 C 0.04 0.45 6.21 -2.84 -0.02 0.44 16 10 N -0.53 -6.74 5.16 -231.26 -1.19 -7.93 16 11 C 0.05 0.75 4.54 -3.83 -0.02 0.73 16 12 C -0.11 -1.91 5.24 -26.73 -0.14 -2.05 16 13 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 14 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 15 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 16 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 18 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 19 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 23 C 0.01 0.08 5.43 -2.30 -0.01 0.07 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.36 6.25 -51.93 -0.32 0.04 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.69 6.04 -51.93 -0.31 0.38 16 28 H 0.04 0.34 6.48 -51.93 -0.34 0.00 16 29 H 0.08 0.53 5.88 -51.93 -0.31 0.22 16 30 H 0.04 0.30 7.34 -51.93 -0.38 -0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.41 6.71 -51.93 -0.35 0.07 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.07 0.69 6.10 -51.93 -0.32 0.38 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.74 6.91 -51.93 -0.36 0.38 16 38 H 0.03 0.45 7.96 -51.93 -0.41 0.04 16 39 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.92 7.14 -51.93 -0.37 0.55 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 45 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 47 H 0.05 0.57 5.23 -51.93 -0.27 0.30 16 48 H 0.07 0.82 7.93 -51.93 -0.41 0.41 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -30.73 355.95 -10.31 -41.04 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -9.07 Total: -3.98 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -0.52 Total: -18.79 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -1.41 Total: -41.25 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.73 -10.31 -41.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395326604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.255 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds