Wall clock time and date at job start Mon Mar 30 2020 07:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47346 * 2 1 4 4 C 1.46898 * 110.99482 * 66.04580 * 3 2 1 5 5 C 1.53008 * 109.46673 * 199.83532 * 4 3 2 6 6 C 1.46898 * 111.00110 * 189.99766 * 3 2 1 7 7 H 1.08995 * 110.87696 * 189.67648 * 6 3 2 8 8 C 1.55142 * 110.98843 * 65.83609 * 6 3 2 9 9 C 1.54318 * 103.01958 * 206.21511 * 8 6 3 10 10 N 1.47437 * 107.23176 * 22.28622 * 9 8 6 11 11 C 1.46894 * 111.00227 * 123.25757 * 10 9 8 12 12 C 1.53004 * 109.47369 * 69.87186 * 11 10 9 13 13 C 1.52992 * 109.47429 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47429 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47272 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00240 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99714 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99829 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00085 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47350 * 90.00337 * 19 17 15 21 21 H 1.48506 * 109.47115 * 210.00199 * 19 17 15 22 22 H 1.48501 * 109.47083 * 329.99825 * 19 17 15 23 23 C 1.47849 * 108.56780 * 0.98809 * 10 9 8 24 24 H 1.08998 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47002 * 299.99950 * 1 2 3 26 26 H 1.08998 * 109.46913 * 59.99794 * 1 2 3 27 27 H 1.09003 * 109.47002 * 240.00050 * 2 1 3 28 28 H 1.08998 * 109.46913 * 120.00205 * 2 1 3 29 29 H 1.08995 * 109.47536 * 319.83354 * 4 3 2 30 30 H 1.09002 * 109.47196 * 79.84253 * 4 3 2 31 31 H 1.09004 * 109.47053 * 184.79656 * 5 4 3 32 32 H 1.08998 * 109.47171 * 304.79869 * 5 4 3 33 33 H 1.09006 * 109.46959 * 64.80098 * 5 4 3 34 34 H 1.09008 * 110.70348 * 87.83639 * 8 6 3 35 35 H 1.08994 * 110.70872 * 324.60344 * 8 6 3 36 36 H 1.08999 * 109.88846 * 262.88001 * 9 8 6 37 37 H 1.08997 * 109.88569 * 141.69258 * 9 8 6 38 38 H 1.08998 * 109.47196 * 309.87150 * 11 10 9 39 39 H 1.09001 * 109.47859 * 189.87271 * 11 10 9 40 40 H 1.08998 * 109.46990 * 59.99838 * 12 11 10 41 41 H 1.09001 * 109.47160 * 300.00527 * 12 11 10 42 42 H 1.09001 * 109.47114 * 300.00229 * 13 12 11 43 43 H 1.08998 * 109.47433 * 59.99783 * 13 12 11 44 44 H 1.09001 * 109.47160 * 300.00201 * 14 13 12 45 45 H 1.08998 * 109.46731 * 59.99997 * 14 13 12 46 46 H 0.96996 * 120.00024 * 180.02562 * 18 17 15 47 47 H 1.09000 * 110.37165 * 94.73378 * 23 10 9 48 48 H 1.09004 * 110.37264 * 217.07694 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0668 1.2533 5 6 1.7356 3.5813 1.0453 6 6 3.4685 1.4311 -0.2381 7 1 3.8580 2.4351 -0.0700 8 6 3.8131 0.9334 -1.6665 9 6 5.2578 0.4128 -1.5143 10 7 5.4642 0.1084 -0.0865 11 6 5.8746 -1.2897 0.0997 12 6 7.2951 -1.4799 -0.4360 13 6 7.7224 -2.9362 -0.2426 14 6 9.1427 -3.1266 -0.7788 15 6 9.5637 -4.5609 -0.5877 16 1 8.8864 -5.2661 -0.1293 17 6 10.8143 -4.9726 -0.9973 18 7 11.1819 -6.2242 -0.8301 19 14 11.9867 -3.7524 -1.7883 20 1 12.8156 -3.1096 -0.7371 21 1 12.8688 -4.4642 -2.7478 22 1 11.2079 -2.7135 -2.5089 23 6 4.2096 0.3938 0.6418 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.6606 1.7843 1.5514 30 1 2.3740 1.7765 2.0334 31 1 1.5599 4.0864 1.9952 32 1 2.7203 3.8537 0.6656 33 1 0.9730 3.8826 0.3271 34 1 3.7730 1.7555 -2.3812 35 1 3.1427 0.1279 -1.9662 36 1 5.9637 1.1785 -1.8360 37 1 5.3909 -0.4908 -2.1091 38 1 5.1915 -1.9441 -0.4417 39 1 5.8504 -1.5373 1.1610 40 1 7.9783 -0.8255 0.1054 41 1 7.3195 -1.2324 -1.4972 42 1 7.6980 -3.1842 0.8186 43 1 7.0392 -3.5904 -0.7842 44 1 9.1667 -2.8788 -1.8400 45 1 9.8261 -2.4725 -0.2374 46 1 12.0618 -6.5138 -1.1178 47 1 3.6140 -0.5136 0.7418 48 1 4.4279 0.8155 1.6230 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395326604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:49 Heat of formation + Delta-G solvation = -27.349139 kcal Electronic energy + Delta-G solvation = -20964.132112 eV Core-core repulsion = 18052.482763 eV Total energy + Delta-G solvation = -2911.649349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.90849 -38.19546 -36.39676 -34.54806 -32.73308 -32.65769 -30.36754 -30.14285 -27.89073 -26.11272 -24.12469 -23.58134 -23.11986 -21.87106 -21.24093 -20.13193 -18.85026 -17.54038 -17.29246 -16.39958 -16.33611 -15.94895 -15.79747 -15.28129 -14.94265 -14.84585 -14.64960 -14.37841 -14.10202 -13.74972 -13.34201 -13.25209 -13.17957 -12.91004 -12.70775 -12.62212 -12.53713 -12.37178 -12.35472 -12.24111 -12.06638 -11.82536 -11.75394 -11.44422 -11.40921 -11.35543 -11.30400 -11.18432 -10.77216 -9.34130 -9.21622 -8.30621 -6.34806 1.35440 1.37119 1.49867 2.35877 2.68089 3.04667 3.14640 3.61073 3.69040 3.95759 4.02909 4.08707 4.14461 4.21585 4.29263 4.30729 4.40975 4.48262 4.52290 4.54553 4.57677 4.65769 4.69087 4.74261 4.79176 4.86430 4.89228 4.95690 5.02575 5.04519 5.12378 5.12731 5.15334 5.16308 5.23521 5.27055 5.33289 5.40572 5.55384 5.62659 5.67233 5.95010 6.05833 6.13150 6.18503 6.28190 6.73282 7.30047 8.86395 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.037890 B = 0.002904 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.799740 B = 9638.712264 C = 9931.911307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 N -0.527 5.527 4 C 0.042 3.958 5 C -0.141 4.141 6 C 0.083 3.917 7 H 0.098 0.902 8 C -0.126 4.126 9 C 0.038 3.962 10 N -0.536 5.536 11 C 0.061 3.939 12 C -0.102 4.102 13 C -0.094 4.094 14 C -0.011 4.011 15 C -0.535 4.535 16 H 0.029 0.971 17 C 0.001 3.999 18 N -0.953 5.953 19 Si 0.954 3.046 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.246 1.246 23 C 0.010 3.990 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.018 0.982 45 H 0.017 0.983 46 H 0.266 0.734 47 H 0.050 0.950 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.205 20.940 1.348 30.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 N -0.251 5.251 4 C -0.086 4.086 5 C -0.199 4.199 6 C -0.027 4.027 7 H 0.116 0.884 8 C -0.165 4.165 9 C -0.090 4.090 10 N -0.260 5.260 11 C -0.067 4.067 12 C -0.140 4.140 13 C -0.133 4.133 14 C -0.049 4.049 15 C -0.573 4.573 16 H 0.048 0.952 17 C -0.196 4.196 18 N -0.594 5.594 19 Si 0.777 3.223 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.170 1.170 23 C -0.119 4.119 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.932 21.386 1.140 30.654 hybrid contribution 0.686 -1.378 0.203 1.553 sum -21.245 20.008 1.343 29.214 Atomic orbital electron populations 1.21787 0.93727 1.02097 1.02509 1.22205 0.96782 0.89125 1.00544 1.62241 1.11800 1.15781 1.35269 1.22230 1.01256 0.95472 0.89591 1.21727 1.01996 0.94165 1.02024 1.22835 0.86752 0.98836 0.94284 0.88372 1.22794 0.95210 1.01479 0.97003 1.22905 0.96917 1.00744 0.88445 1.63486 1.30955 1.21776 1.09802 1.22189 0.95827 0.87935 1.00728 1.21484 0.95832 0.95663 1.00976 1.21293 0.96347 0.95681 0.99941 1.19528 0.94839 0.94201 0.96299 1.21559 1.00380 0.95839 1.39532 0.95214 1.26081 1.00187 0.97191 0.96103 1.70077 1.21421 1.18262 1.49632 0.85600 0.78465 0.79258 0.78981 1.19104 1.20831 1.16984 1.23722 0.90141 0.99298 0.98775 0.91643 0.92082 0.92099 0.91195 0.94950 0.89799 0.94890 0.91394 0.93143 0.92223 0.89350 0.91219 0.90158 0.92873 0.94944 0.91267 0.91850 0.92187 0.93489 0.93613 0.96324 0.96479 0.92480 0.93144 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.88 71.98 0.71 -1.07 16 2 C 0.04 0.63 4.52 86.30 0.39 1.02 16 3 N -0.53 -8.26 4.44 -862.92 -3.83 -12.09 16 4 C 0.04 0.56 5.50 86.31 0.47 1.04 16 5 C -0.14 -1.68 10.08 71.98 0.73 -0.95 16 6 C 0.08 1.43 2.95 46.30 0.14 1.56 16 7 H 0.10 1.72 6.63 -2.39 -0.02 1.70 16 8 C -0.13 -2.22 6.47 31.78 0.21 -2.01 16 9 C 0.04 0.81 6.21 86.65 0.54 1.34 16 10 N -0.54 -12.92 5.16 -885.58 -4.57 -17.48 16 11 C 0.06 1.67 4.54 86.31 0.39 2.06 16 12 C -0.10 -3.24 5.24 30.59 0.16 -3.08 16 13 C -0.09 -3.78 5.15 30.59 0.16 -3.62 16 14 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 15 C -0.54 -31.99 9.66 25.60 0.25 -31.74 16 16 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 17 C 0.00 0.05 5.47 84.65 0.46 0.51 16 18 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 19 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 23 C 0.01 0.20 5.43 86.77 0.47 0.68 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.68 6.25 -2.39 -0.01 0.67 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 1.18 6.04 -2.39 -0.01 1.16 16 28 H 0.03 0.54 6.48 -2.39 -0.02 0.52 16 29 H 0.08 1.00 5.88 -2.39 -0.01 0.98 16 30 H 0.03 0.48 7.34 -2.39 -0.02 0.46 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.05 0.66 6.71 -2.39 -0.02 0.64 16 33 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.07 1.25 6.10 -2.39 -0.01 1.24 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.21 6.91 -2.39 -0.02 1.20 16 38 H 0.03 0.88 7.96 -2.39 -0.02 0.86 16 39 H 0.07 1.89 8.07 -2.39 -0.02 1.87 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 1.87 7.14 -2.39 -0.02 1.85 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 45 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 46 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 47 H 0.05 1.05 5.23 -2.39 -0.01 1.04 16 48 H 0.07 1.51 7.93 -2.39 -0.02 1.49 16 Total: -1.00 -65.87 355.95 -0.19 -66.05 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.83 Total: 11.87 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 5.19 Total: -34.69 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -8.10 Total: -90.51 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -65.87 -0.19 -66.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395326604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.706 kcal (2) G-P(sol) polarization free energy of solvation -65.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds