Wall clock time and date at job start Mon Mar 30 2020 06:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46970 * 2 1 4 4 C 1.52996 * 109.47064 * 120.00331 * 2 1 3 5 5 C 1.50704 * 109.46978 * 185.00389 * 4 2 1 6 6 H 1.07998 * 119.99713 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99601 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00210 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99521 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46970 * 89.99821 * 9 7 5 11 11 H 1.48501 * 109.46825 * 209.99990 * 9 7 5 12 12 H 1.48504 * 109.47000 * 329.99632 * 9 7 5 13 13 N 1.46900 * 109.46997 * 240.00036 * 2 1 3 14 14 C 1.46905 * 111.00012 * 98.85553 * 13 2 1 15 15 C 1.53002 * 109.46921 * 64.13554 * 14 13 2 16 16 C 1.52999 * 109.47201 * 304.13769 * 14 13 2 17 17 C 1.53000 * 109.47160 * 184.13207 * 14 13 2 18 18 N 1.46896 * 109.46951 * 66.21707 * 17 14 13 19 19 C 1.46836 * 111.00227 * 292.75493 * 18 17 14 20 20 C 1.53033 * 109.52685 * 174.16236 * 19 18 17 21 21 C 1.53126 * 109.28131 * 59.17640 * 20 19 18 22 22 C 1.53121 * 109.15675 * 302.35353 * 21 20 19 23 23 C 1.46853 * 110.99905 * 168.54197 * 18 17 14 24 24 H 1.08999 * 109.47067 * 305.65617 * 1 2 3 25 25 H 1.09006 * 109.47115 * 65.65896 * 1 2 3 26 26 H 1.09001 * 109.47055 * 185.65058 * 1 2 3 27 27 H 1.09004 * 109.46548 * 304.99803 * 4 2 1 28 28 H 1.08999 * 109.47630 * 64.99781 * 4 2 1 29 29 H 0.97004 * 119.99596 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99914 * 222.80982 * 13 2 1 31 31 H 1.09000 * 109.47145 * 184.47851 * 15 14 13 32 32 H 1.09005 * 109.47217 * 304.47855 * 15 14 13 33 33 H 1.08998 * 109.47462 * 64.47184 * 15 14 13 34 34 H 1.09000 * 109.46536 * 298.14338 * 16 14 13 35 35 H 1.08995 * 109.47308 * 58.14320 * 16 14 13 36 36 H 1.09001 * 109.46847 * 178.15419 * 16 14 13 37 37 H 1.08996 * 109.47104 * 306.21567 * 17 14 13 38 38 H 1.08998 * 109.47090 * 186.21901 * 17 14 13 39 39 H 1.09001 * 109.46886 * 54.14333 * 19 18 17 40 40 H 1.09004 * 109.46486 * 294.17358 * 19 18 17 41 41 H 1.09000 * 109.51133 * 179.12119 * 20 19 18 42 42 H 1.09010 * 109.50481 * 299.24109 * 20 19 18 43 43 H 1.09004 * 109.51782 * 62.24966 * 21 20 19 44 44 H 1.08992 * 109.52633 * 182.44464 * 21 20 19 45 45 H 1.08999 * 109.49897 * 297.70343 * 22 21 20 46 46 H 1.09002 * 109.49977 * 177.59245 * 22 21 20 47 47 H 1.08996 * 109.46172 * 305.85806 * 23 18 17 48 48 H 1.09005 * 109.45977 * 65.82543 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3127 6 1 4.0790 -0.0860 0.5392 7 6 4.2303 -1.1927 2.3583 8 7 3.5763 -1.8362 3.3004 9 14 6.0921 -1.0613 2.4366 10 1 6.4708 0.1615 3.1892 11 1 6.6441 -2.2565 3.1238 12 1 6.6414 -0.9847 1.0590 13 7 2.0197 -0.6925 -1.1994 14 6 2.3942 0.2681 -2.2459 15 6 3.5704 1.1180 -1.7607 16 6 1.2022 1.1761 -2.5550 17 6 2.8003 -0.4893 -3.5118 18 7 1.6304 -1.1874 -4.0612 19 6 1.1916 -2.2647 -3.1651 20 6 -0.1094 -2.8723 -3.6944 21 6 0.1256 -3.4201 -5.1049 22 6 0.6281 -2.2888 -6.0061 23 6 1.9077 -1.6982 -5.4098 24 1 -0.3633 0.5990 0.8350 25 1 -0.3634 0.4236 -0.9364 26 1 -0.3633 -1.0227 0.1012 27 1 1.6054 -0.2617 2.1369 28 1 1.7517 -1.7716 1.2056 29 1 4.0607 -2.2430 4.0358 30 1 2.7918 -1.3022 -0.9751 31 1 3.7970 1.8826 -2.5037 32 1 3.3086 1.5952 -0.8163 33 1 4.4434 0.4815 -1.6164 34 1 0.3753 0.5742 -2.9319 35 1 0.8922 1.6908 -1.6457 36 1 1.4901 1.9098 -3.3079 37 1 3.5753 -1.2157 -3.2676 38 1 3.1826 0.2156 -4.2500 39 1 1.0240 -1.8611 -2.1666 40 1 1.9607 -3.0359 -3.1205 41 1 -0.4265 -3.6823 -3.0376 42 1 -0.8829 -2.1049 -3.7264 43 1 0.8711 -4.2145 -5.0676 44 1 -0.8092 -3.8149 -5.5028 45 1 -0.1337 -1.5123 -6.0743 46 1 0.8380 -2.6819 -7.0009 47 1 2.2602 -0.8829 -6.0415 48 1 2.6735 -2.4720 -5.3546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:56 Heat of formation + Delta-G solvation = -12.383511 kcal Electronic energy + Delta-G solvation = -22705.606412 eV Core-core repulsion = 19794.606021 eV Total energy + Delta-G solvation = -2911.000391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.37636 -37.45605 -34.23737 -32.58373 -31.56937 -30.52684 -28.32828 -27.65900 -26.29531 -26.00032 -23.13291 -22.67176 -22.52765 -19.69243 -19.29433 -18.57069 -16.39699 -15.89598 -15.30168 -14.94184 -14.58856 -14.28314 -14.10704 -13.95008 -13.36745 -13.18621 -12.95093 -12.51591 -12.49511 -12.05185 -12.00270 -11.85684 -11.53684 -11.36414 -11.24197 -11.21781 -10.97732 -10.93640 -10.77201 -10.66102 -10.52394 -10.44502 -10.28626 -10.14490 -9.99159 -9.85024 -9.12213 -9.03410 -8.40277 -7.94293 -7.31066 -6.03225 -4.05881 3.27708 3.35112 3.36480 4.22340 4.41944 4.84732 4.95675 5.03663 5.11707 5.26048 5.33401 5.46900 5.52629 5.62356 5.71039 5.73715 5.84102 5.85115 5.89509 5.97557 6.03719 6.07265 6.11917 6.17110 6.17507 6.21454 6.29050 6.30997 6.33161 6.44235 6.51044 6.60162 6.64596 6.71336 6.88078 6.97715 7.04714 7.10365 7.51721 7.52655 7.61475 7.66210 7.97672 8.09947 8.27908 8.37960 9.01609 9.58679 11.07654 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.005281 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.304335 B = 5300.760919 C = 5346.689335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.044 0.956 4 C 0.015 3.985 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.662 5.662 14 C 0.114 3.886 15 C -0.178 4.178 16 C -0.127 4.127 17 C 0.072 3.928 18 N -0.523 5.523 19 C 0.019 3.981 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.112 4.112 23 C 0.052 3.948 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.019 0.981 28 H 0.022 0.978 29 H 0.260 0.740 30 H 0.352 0.648 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.029 0.971 38 H 0.067 0.933 39 H 0.152 0.848 40 H 0.015 0.985 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 1.412 -15.637 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.062 0.938 4 C -0.022 4.022 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.294 5.294 14 C 0.022 3.978 15 C -0.237 4.237 16 C -0.184 4.184 17 C -0.056 4.056 18 N -0.247 5.247 19 C -0.108 4.108 20 C -0.152 4.152 21 C -0.160 4.160 22 C -0.150 4.150 23 C -0.076 4.076 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.173 0.827 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.169 0.831 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.999 1.533 -15.753 16.926 hybrid contribution 2.757 -0.321 0.502 2.820 sum -3.242 1.212 -15.251 15.639 Atomic orbital electron populations 1.21977 0.96815 1.01051 0.99943 1.21684 0.93279 0.96978 0.90797 0.93781 1.19386 0.95419 0.95967 0.91425 1.21289 0.92245 1.34323 1.08344 0.92455 1.24986 0.97959 0.95307 0.95821 1.69963 1.35383 1.35722 1.11930 0.86696 0.86290 0.77510 0.78081 1.20795 1.21301 1.20022 1.60828 1.39439 1.19611 1.09556 1.20877 0.93900 0.91764 0.91229 1.22551 0.99059 1.00342 1.01771 1.21829 0.98375 0.98072 1.00159 1.22066 0.91039 0.96699 0.95842 1.61885 1.33378 1.28009 1.01428 1.23151 0.94371 0.91748 1.01552 1.21580 0.98829 0.99672 0.95093 1.21608 1.00264 0.97545 0.96585 1.21523 0.97735 0.98114 0.97620 1.22072 0.96217 0.97778 0.91564 0.93975 0.93169 0.93172 0.96283 0.95950 0.93042 0.82729 0.93455 0.91185 0.92654 0.90808 0.92993 0.93994 0.95245 0.91490 0.83106 0.96646 0.92208 0.91717 0.92821 0.92676 0.91421 0.92487 0.91729 0.95797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.06 37.16 0.34 -2.08 16 2 C 0.08 1.58 1.75 -67.71 -0.12 1.46 16 3 H 0.04 0.89 5.04 -51.93 -0.26 0.63 16 4 C 0.02 0.38 4.46 -27.88 -0.12 0.25 16 5 C -0.52 -13.78 8.13 -34.44 -0.28 -14.06 16 6 H 0.06 1.45 6.21 -52.49 -0.33 1.13 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.66 -11.59 2.42 -93.04 -0.23 -11.81 16 14 C 0.11 1.75 0.64 -131.60 -0.08 1.66 16 15 C -0.18 -2.84 7.54 37.16 0.28 -2.56 16 16 C -0.13 -1.83 6.98 37.16 0.26 -1.57 16 17 C 0.07 1.03 4.27 -3.83 -0.02 1.01 16 18 N -0.52 -7.18 3.58 -234.69 -0.84 -8.02 16 19 C 0.02 0.28 5.05 -3.84 -0.02 0.26 16 20 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 21 C -0.12 -1.39 6.00 -26.60 -0.16 -1.55 16 22 C -0.11 -1.22 6.09 -26.65 -0.16 -1.38 16 23 C 0.05 0.63 5.46 -3.84 -0.02 0.61 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.79 5.65 -51.93 -0.29 0.49 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.35 6.99 7.35 -39.29 -0.29 6.70 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.24 5.93 -51.93 -0.31 0.93 16 33 H 0.05 0.94 7.83 -51.93 -0.41 0.53 16 34 H 0.07 1.11 7.04 -51.93 -0.37 0.74 16 35 H 0.05 0.78 5.64 -51.93 -0.29 0.49 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.03 0.45 8.11 -51.93 -0.42 0.03 16 38 H 0.07 0.88 7.96 -51.93 -0.41 0.46 16 39 H 0.15 2.50 4.65 -51.96 -0.24 2.26 16 40 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.73 8.00 -51.93 -0.42 0.31 16 48 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 348.83 15.07 5.26 5.26 Total: -1.00 -26.82 348.83 -9.55 -36.37 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -9.09 Total: 5.39 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -0.37 Total: -17.98 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.33 Total: -45.19 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.82 -9.55 -36.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.987 kcal (2) G-P(sol) polarization free energy of solvation -26.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds