Wall clock time and date at job start Mon Mar 30 2020 06:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46970 * 2 1 4 4 C 1.52996 * 109.47064 * 120.00331 * 2 1 3 5 5 C 1.50704 * 109.46978 * 185.00389 * 4 2 1 6 6 H 1.07998 * 119.99713 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99601 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00210 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99521 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46970 * 89.99821 * 9 7 5 11 11 H 1.48501 * 109.46825 * 209.99990 * 9 7 5 12 12 H 1.48504 * 109.47000 * 329.99632 * 9 7 5 13 13 N 1.46900 * 109.46997 * 240.00036 * 2 1 3 14 14 C 1.46905 * 111.00012 * 98.85553 * 13 2 1 15 15 C 1.53002 * 109.46921 * 64.13554 * 14 13 2 16 16 C 1.52999 * 109.47201 * 304.13769 * 14 13 2 17 17 C 1.53000 * 109.47160 * 184.13207 * 14 13 2 18 18 N 1.46896 * 109.46951 * 66.21707 * 17 14 13 19 19 C 1.46836 * 111.00227 * 292.75493 * 18 17 14 20 20 C 1.53033 * 109.52685 * 174.16236 * 19 18 17 21 21 C 1.53126 * 109.28131 * 59.17640 * 20 19 18 22 22 C 1.53121 * 109.15675 * 302.35353 * 21 20 19 23 23 C 1.46853 * 110.99905 * 168.54197 * 18 17 14 24 24 H 1.08999 * 109.47067 * 305.65617 * 1 2 3 25 25 H 1.09006 * 109.47115 * 65.65896 * 1 2 3 26 26 H 1.09001 * 109.47055 * 185.65058 * 1 2 3 27 27 H 1.09004 * 109.46548 * 304.99803 * 4 2 1 28 28 H 1.08999 * 109.47630 * 64.99781 * 4 2 1 29 29 H 0.97004 * 119.99596 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99914 * 222.80982 * 13 2 1 31 31 H 1.09000 * 109.47145 * 184.47851 * 15 14 13 32 32 H 1.09005 * 109.47217 * 304.47855 * 15 14 13 33 33 H 1.08998 * 109.47462 * 64.47184 * 15 14 13 34 34 H 1.09000 * 109.46536 * 298.14338 * 16 14 13 35 35 H 1.08995 * 109.47308 * 58.14320 * 16 14 13 36 36 H 1.09001 * 109.46847 * 178.15419 * 16 14 13 37 37 H 1.08996 * 109.47104 * 306.21567 * 17 14 13 38 38 H 1.08998 * 109.47090 * 186.21901 * 17 14 13 39 39 H 1.09001 * 109.46886 * 54.14333 * 19 18 17 40 40 H 1.09004 * 109.46486 * 294.17358 * 19 18 17 41 41 H 1.09000 * 109.51133 * 179.12119 * 20 19 18 42 42 H 1.09010 * 109.50481 * 299.24109 * 20 19 18 43 43 H 1.09004 * 109.51782 * 62.24966 * 21 20 19 44 44 H 1.08992 * 109.52633 * 182.44464 * 21 20 19 45 45 H 1.08999 * 109.49897 * 297.70343 * 22 21 20 46 46 H 1.09002 * 109.49977 * 177.59245 * 22 21 20 47 47 H 1.08996 * 109.46172 * 305.85806 * 23 18 17 48 48 H 1.09005 * 109.45977 * 65.82543 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3127 6 1 4.0790 -0.0860 0.5392 7 6 4.2303 -1.1927 2.3583 8 7 3.5763 -1.8362 3.3004 9 14 6.0921 -1.0613 2.4366 10 1 6.4708 0.1615 3.1892 11 1 6.6441 -2.2565 3.1238 12 1 6.6414 -0.9847 1.0590 13 7 2.0197 -0.6925 -1.1994 14 6 2.3942 0.2681 -2.2459 15 6 3.5704 1.1180 -1.7607 16 6 1.2022 1.1761 -2.5550 17 6 2.8003 -0.4893 -3.5118 18 7 1.6304 -1.1874 -4.0612 19 6 1.1916 -2.2647 -3.1651 20 6 -0.1094 -2.8723 -3.6944 21 6 0.1256 -3.4201 -5.1049 22 6 0.6281 -2.2888 -6.0061 23 6 1.9077 -1.6982 -5.4098 24 1 -0.3633 0.5990 0.8350 25 1 -0.3634 0.4236 -0.9364 26 1 -0.3633 -1.0227 0.1012 27 1 1.6054 -0.2617 2.1369 28 1 1.7517 -1.7716 1.2056 29 1 4.0607 -2.2430 4.0358 30 1 2.7918 -1.3022 -0.9751 31 1 3.7970 1.8826 -2.5037 32 1 3.3086 1.5952 -0.8163 33 1 4.4434 0.4815 -1.6164 34 1 0.3753 0.5742 -2.9319 35 1 0.8922 1.6908 -1.6457 36 1 1.4901 1.9098 -3.3079 37 1 3.5753 -1.2157 -3.2676 38 1 3.1826 0.2156 -4.2500 39 1 1.0240 -1.8611 -2.1666 40 1 1.9607 -3.0359 -3.1205 41 1 -0.4265 -3.6823 -3.0376 42 1 -0.8829 -2.1049 -3.7264 43 1 0.8711 -4.2145 -5.0676 44 1 -0.8092 -3.8149 -5.5028 45 1 -0.1337 -1.5123 -6.0743 46 1 0.8380 -2.6819 -7.0009 47 1 2.2602 -0.8829 -6.0415 48 1 2.6735 -2.4720 -5.3546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813977.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:56 Heat of formation + Delta-G solvation = -26.235665 kcal Electronic energy + Delta-G solvation = -22706.207087 eV Core-core repulsion = 19794.606021 eV Total energy + Delta-G solvation = -2911.601065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.59307 -38.70110 -35.80124 -34.30542 -32.94176 -31.54742 -29.70398 -29.49263 -27.67174 -27.13030 -24.99686 -23.80062 -23.61785 -21.15044 -20.39688 -19.91058 -18.46586 -17.07437 -16.70043 -16.60547 -15.90330 -15.66918 -15.25372 -15.05842 -14.70599 -14.41241 -14.22547 -13.98981 -13.89430 -13.45975 -13.36858 -13.28965 -13.07108 -12.81755 -12.68753 -12.58296 -12.49771 -12.39951 -12.17041 -12.06129 -11.97132 -11.69909 -11.56396 -11.34818 -11.16326 -11.10941 -10.94969 -10.87934 -10.55103 -9.09316 -8.71239 -8.16883 -6.25470 1.37540 1.38313 1.47744 2.39950 3.13379 3.15826 3.47097 3.95456 4.06569 4.14718 4.16965 4.27227 4.39490 4.45852 4.50033 4.65142 4.67873 4.70792 4.78065 4.79134 4.82223 4.86062 4.88485 4.93016 5.02191 5.11630 5.15516 5.16467 5.19148 5.24708 5.27204 5.32245 5.36720 5.37772 5.50117 5.58165 5.58807 5.63416 5.71322 5.84009 5.92541 6.27546 6.36965 6.45374 6.56669 6.70471 6.91479 7.43132 8.94759 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.005281 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.304335 B = 5300.760919 C = 5346.689335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.095 3.905 3 H 0.042 0.958 4 C 0.023 3.977 5 C -0.526 4.526 6 H 0.066 0.934 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.654 5.654 14 C 0.113 3.887 15 C -0.173 4.173 16 C -0.118 4.118 17 C 0.076 3.924 18 N -0.521 5.521 19 C 0.023 3.977 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.107 4.107 23 C 0.049 3.951 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.042 0.958 27 H -0.011 1.011 28 H -0.006 1.006 29 H 0.260 0.740 30 H 0.336 0.664 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.014 0.986 38 H 0.087 0.913 39 H 0.133 0.867 40 H -0.004 1.004 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.816 2.360 -18.152 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.014 4.014 3 H 0.059 0.941 4 C -0.014 4.014 5 C -0.564 4.564 6 H 0.085 0.915 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.778 3.222 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.285 5.285 14 C 0.022 3.978 15 C -0.232 4.232 16 C -0.176 4.176 17 C -0.052 4.052 18 N -0.245 5.245 19 C -0.105 4.105 20 C -0.149 4.149 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.079 4.079 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.007 0.993 28 H 0.012 0.988 29 H 0.069 0.931 30 H 0.155 0.845 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.032 0.968 38 H 0.105 0.895 39 H 0.150 0.850 40 H 0.015 0.985 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.803 2.498 -18.294 19.354 hybrid contribution 2.673 -0.617 1.264 3.020 sum -3.130 1.881 -17.030 17.417 Atomic orbital electron populations 1.21886 0.94990 1.00870 1.01156 1.21444 0.94644 0.95963 0.89372 0.94060 1.19255 0.94823 0.94526 0.92802 1.21657 0.93243 1.33388 1.08109 0.91543 1.25833 1.02658 0.95195 0.95660 1.70101 1.37231 1.37119 1.12766 0.85644 0.80730 0.77378 0.78458 1.20295 1.21329 1.18861 1.60966 1.38810 1.19764 1.08952 1.21003 0.94340 0.91578 0.90919 1.22485 0.98527 1.00655 1.01570 1.21744 0.97555 0.97963 1.00330 1.22023 0.90854 0.96672 0.95670 1.61911 1.32992 1.27580 1.01997 1.22990 0.94835 0.91510 1.01167 1.21541 0.97615 0.99546 0.96243 1.21592 1.00966 0.97639 0.95580 1.21511 0.96925 0.97812 0.98269 1.22176 0.96876 0.98156 0.90651 0.93774 0.91039 0.93878 0.99309 0.98774 0.93122 0.84489 0.90855 0.93177 0.94137 0.91129 0.93688 0.92104 0.96789 0.89502 0.84988 0.98547 0.92446 0.91721 0.93323 0.91114 0.91278 0.90525 0.90253 0.96590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 9.06 71.98 0.65 -3.86 16 2 C 0.10 3.73 1.75 44.92 0.08 3.81 16 3 H 0.04 1.66 5.04 -2.39 -0.01 1.65 16 4 C 0.02 1.19 4.46 29.85 0.13 1.32 16 5 C -0.53 -28.23 8.13 25.60 0.21 -28.02 16 6 H 0.07 3.38 6.21 -2.91 -0.02 3.36 16 7 C 0.00 0.24 5.46 84.66 0.46 0.71 16 8 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 9 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.65 -23.03 2.42 -448.28 -1.09 -24.11 16 14 C 0.11 3.31 0.64 3.53 0.00 3.32 16 15 C -0.17 -5.28 7.54 71.98 0.54 -4.74 16 16 C -0.12 -3.14 6.98 71.98 0.50 -2.63 16 17 C 0.08 2.05 4.27 86.30 0.37 2.42 16 18 N -0.52 -13.40 3.58 -896.41 -3.21 -16.61 16 19 C 0.02 0.66 5.05 86.33 0.44 1.10 16 20 C -0.11 -2.76 6.09 30.65 0.19 -2.57 16 21 C -0.12 -2.47 6.00 30.68 0.18 -2.29 16 22 C -0.11 -2.03 6.09 30.64 0.19 -1.84 16 23 C 0.05 1.08 5.46 86.32 0.47 1.55 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 2.15 5.65 -2.38 -0.01 2.13 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 27 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.34 13.70 7.35 -89.69 -0.66 13.04 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.73 5.93 -2.38 -0.01 1.71 16 33 H 0.04 1.33 7.83 -2.39 -0.02 1.32 16 34 H 0.07 1.94 7.04 -2.39 -0.02 1.92 16 35 H 0.04 1.25 5.64 -2.39 -0.01 1.24 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.01 0.42 8.11 -2.39 -0.02 0.40 16 38 H 0.09 2.00 7.96 -2.39 -0.02 1.99 16 39 H 0.13 4.39 4.65 -2.44 -0.01 4.38 16 40 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 1.52 8.00 -2.39 -0.02 1.50 16 48 H 0.02 0.38 8.14 -2.38 -0.02 0.36 16 Total: -1.00 -58.43 348.83 2.67 -55.76 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.24 Total: 26.60 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 4.41 Total: -31.72 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -4.01 Total: -96.53 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -58.43 2.67 -55.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813977.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.525 kcal (2) G-P(sol) polarization free energy of solvation -58.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds