Wall clock time and date at job start Mon Mar 30 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47055 * 2 1 4 4 N 1.46899 * 109.47424 * 119.99511 * 2 1 3 5 5 C 1.46906 * 110.99970 * 84.99923 * 4 2 1 6 6 C 1.52993 * 109.47302 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.53217 * 54.90793 * 6 5 4 8 8 C 1.53119 * 109.50889 * 294.80850 * 6 5 4 9 9 C 1.53113 * 109.16462 * 182.40436 * 8 6 5 10 10 C 1.53037 * 109.28034 * 57.64961 * 9 8 6 11 11 N 1.46844 * 109.52650 * 300.82551 * 10 9 8 12 12 C 1.46904 * 111.00262 * 185.83539 * 11 10 9 13 13 H 1.08999 * 109.47092 * 186.73011 * 12 11 10 14 14 C 1.52994 * 109.47119 * 306.73068 * 12 11 10 15 15 C 1.52997 * 109.46940 * 66.73139 * 12 11 10 16 16 C 1.50699 * 109.47265 * 63.87232 * 15 12 11 17 17 H 1.07995 * 120.00049 * 359.97438 * 16 15 12 18 18 C 1.37879 * 119.99909 * 180.02562 * 16 15 12 19 19 N 1.31521 * 120.00232 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00120 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47509 * 59.99035 * 20 18 16 22 22 H 1.48498 * 109.47363 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46896 * 299.99346 * 20 18 16 24 24 C 1.46848 * 111.19952 * 61.73670 * 11 10 9 25 25 H 1.08995 * 109.47148 * 60.00106 * 1 2 3 26 26 H 1.09006 * 109.46559 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46859 * 300.00008 * 1 2 3 28 28 H 1.09002 * 109.47319 * 239.99898 * 2 1 3 29 29 H 1.09002 * 109.47014 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46902 * 299.99689 * 3 2 1 31 31 H 1.09002 * 109.47140 * 59.99789 * 3 2 1 32 32 H 1.00903 * 111.00653 * 208.95567 * 4 2 1 33 33 H 1.09004 * 109.46690 * 60.00206 * 5 4 2 34 34 H 1.08994 * 109.47019 * 300.00837 * 5 4 2 35 35 H 1.09005 * 109.51842 * 302.30686 * 8 6 5 36 36 H 1.08997 * 109.52146 * 62.43449 * 8 6 5 37 37 H 1.09001 * 109.50670 * 177.59461 * 9 8 6 38 38 H 1.09005 * 109.50086 * 297.67435 * 9 8 6 39 39 H 1.08999 * 109.46538 * 180.80826 * 10 9 8 40 40 H 1.09001 * 109.45933 * 60.83708 * 10 9 8 41 41 H 1.08997 * 109.47057 * 180.02562 * 14 12 11 42 42 H 1.08996 * 109.47603 * 59.99707 * 14 12 11 43 43 H 1.09007 * 109.47216 * 299.99783 * 14 12 11 44 44 H 1.08994 * 109.47375 * 183.87437 * 15 12 11 45 45 H 1.09003 * 109.47013 * 303.87311 * 15 12 11 46 46 H 0.96992 * 120.00154 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.46418 * 58.27788 * 24 11 10 48 48 H 1.09001 * 109.46732 * 178.25481 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 -2.1437 0.9808 6 6 2.5964 -2.8287 2.2486 7 1 1.9728 -2.5427 3.0957 8 6 4.0428 -2.4003 2.5110 9 6 4.5687 -3.1360 3.7465 10 6 4.4596 -4.6456 3.5203 11 7 3.0572 -5.0050 3.2745 12 6 2.8941 -6.4625 3.1902 13 1 1.8728 -6.6971 2.8901 14 6 3.8715 -7.0260 2.1568 15 6 3.1805 -7.0876 4.5570 16 6 2.1586 -6.6052 5.5540 17 1 1.3828 -5.9208 5.2440 18 6 2.2148 -7.0367 6.8623 19 7 3.1599 -7.8697 7.2401 20 14 0.9478 -6.4393 8.0981 21 1 -0.4099 -6.8374 7.6469 22 1 1.2258 -7.0460 9.4247 23 1 1.0198 -4.9599 8.2050 24 6 2.5444 -4.3473 2.0658 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 2.9174 -0.3305 1.4848 33 1 2.7589 -2.3575 0.1532 34 1 1.0872 -2.5186 0.7426 35 1 4.6592 -2.6513 1.6477 36 1 4.0784 -1.3247 2.6837 37 1 5.6119 -2.8675 3.9134 38 1 3.9766 -2.8542 4.6173 39 1 4.8200 -5.1723 4.4039 40 1 5.0633 -4.9281 2.6578 41 1 3.7502 -8.1074 2.0939 42 1 4.8928 -6.7914 2.4567 43 1 3.6675 -6.5807 1.1830 44 1 3.1269 -8.1734 4.4783 45 1 4.1772 -6.7960 4.8882 46 1 3.1992 -8.1736 8.1603 47 1 3.1571 -4.6312 1.2102 48 1 1.5137 -4.6571 1.8931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:11 Heat of formation + Delta-G solvation = -21.783111 kcal Electronic energy + Delta-G solvation = -21693.928355 eV Core-core repulsion = 18782.520367 eV Total energy + Delta-G solvation = -2911.407988 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.24004 -37.41329 -34.98248 -32.62575 -31.97448 -30.14135 -29.04919 -27.46875 -27.24699 -24.94102 -23.81065 -22.53659 -21.73011 -20.65936 -19.44127 -18.53132 -16.12155 -16.01498 -15.62754 -15.42462 -14.63991 -14.39281 -14.25448 -13.96137 -13.62220 -13.51677 -13.08098 -12.77759 -12.65499 -12.32197 -12.13390 -12.06476 -11.84846 -11.70634 -11.41125 -11.38215 -11.35711 -10.97335 -10.95055 -10.74590 -10.53372 -10.41751 -10.29701 -10.08792 -9.89752 -9.70689 -9.09989 -8.91838 -8.50989 -8.20427 -7.37223 -5.83902 -3.81235 3.45064 3.48273 3.52698 3.98230 4.58808 4.62185 4.72837 4.83557 4.98172 5.12512 5.13035 5.20386 5.43772 5.49592 5.51994 5.55914 5.60795 5.63235 5.68025 5.75298 5.77563 5.83639 5.86757 5.91920 5.94209 5.94945 6.04195 6.12089 6.13554 6.15776 6.27992 6.38351 6.52523 6.55406 6.66506 6.76168 6.81364 7.00582 7.04942 7.31218 7.60897 7.75394 8.00014 8.10099 8.18278 8.64088 9.24692 9.80229 11.28190 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.004305 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.005145 B = 6503.171070 C = 7072.851662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.077 3.923 3 C -0.154 4.154 4 N -0.685 5.685 5 C 0.067 3.933 6 C -0.082 4.082 7 H 0.089 0.911 8 C -0.112 4.112 9 C -0.115 4.115 10 C 0.057 3.943 11 N -0.508 5.508 12 C 0.087 3.913 13 H 0.068 0.932 14 C -0.183 4.183 15 C 0.031 3.969 16 C -0.488 4.488 17 H 0.060 0.940 18 C 0.050 3.950 19 N -0.906 5.906 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.062 3.938 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.340 0.660 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.021 0.979 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.038 0.962 44 H 0.017 0.983 45 H 0.018 0.982 46 H 0.257 0.743 47 H 0.021 0.979 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.567 14.151 -15.107 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.212 4.212 4 N -0.318 5.318 5 C -0.063 4.063 6 C -0.101 4.101 7 H 0.107 0.893 8 C -0.150 4.150 9 C -0.153 4.153 10 C -0.071 4.071 11 N -0.231 5.231 12 C -0.021 4.021 13 H 0.086 0.914 14 C -0.242 4.242 15 C -0.006 4.006 16 C -0.526 4.526 17 H 0.078 0.922 18 C -0.149 4.149 19 N -0.547 5.547 20 Si 0.718 3.282 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.067 4.067 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.067 0.933 47 H 0.039 0.961 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.272 14.203 -14.255 20.125 hybrid contribution 0.631 -0.131 -0.557 0.852 sum 0.359 14.072 -14.813 20.435 Atomic orbital electron populations 1.21792 0.94585 1.01938 1.01472 1.21499 0.96178 0.94098 0.91500 1.21977 1.00659 0.96034 1.02508 1.60537 1.33480 1.03873 1.33898 1.22007 1.00380 0.87376 0.96507 1.21187 0.96642 0.94490 0.97828 0.89270 1.21608 0.95866 0.99314 0.98184 1.21559 1.00093 0.95375 0.98263 1.22067 0.89269 0.95244 1.00515 1.61978 1.18251 1.08643 1.34191 1.21909 0.97374 0.85369 0.97442 0.91400 1.22518 1.01214 1.01343 0.99125 1.19183 0.97395 0.94926 0.89102 1.21139 1.12282 1.25719 0.93498 0.92157 1.25000 0.95847 0.95544 0.98506 1.69955 1.33446 1.33887 1.17401 0.86700 0.82026 0.79033 0.80434 1.20537 1.21728 1.20343 1.22019 0.99694 0.93255 0.91742 0.92931 0.92735 0.91948 0.94263 0.92909 0.92105 0.91665 0.84052 0.95758 0.91062 0.93230 0.92428 0.92443 0.90826 0.89601 0.96142 0.92649 0.92876 0.94334 0.96474 0.96348 0.93331 0.96125 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.42 37.16 0.35 -0.93 16 2 C 0.08 0.71 3.22 -67.71 -0.22 0.49 16 3 C -0.15 -1.18 9.18 37.16 0.34 -0.83 16 4 N -0.68 -7.37 6.31 -106.72 -0.67 -8.04 16 5 C 0.07 0.78 4.94 -3.82 -0.02 0.76 16 6 C -0.08 -1.13 2.56 -90.54 -0.23 -1.36 16 7 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 8 C -0.11 -1.44 5.00 -26.61 -0.13 -1.57 16 9 C -0.12 -1.74 6.09 -26.65 -0.16 -1.91 16 10 C 0.06 1.01 4.52 -3.84 -0.02 1.00 16 11 N -0.51 -9.67 4.28 -226.69 -0.97 -10.64 16 12 C 0.09 1.79 2.26 -67.72 -0.15 1.64 16 13 H 0.07 1.43 7.97 -51.93 -0.41 1.01 16 14 C -0.18 -3.20 8.43 37.15 0.31 -2.89 16 15 C 0.03 0.79 4.37 -27.89 -0.12 0.67 16 16 C -0.49 -13.79 8.81 -34.44 -0.30 -14.09 16 17 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 18 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 19 N -0.91 -27.54 13.29 55.43 0.74 -26.81 16 20 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 24 C 0.06 0.97 4.43 -3.83 -0.02 0.96 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.53 7.45 -51.93 -0.39 0.15 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.37 7.80 -51.93 -0.40 -0.04 16 29 H 0.05 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.34 3.44 6.66 -39.29 -0.26 3.17 16 33 H 0.02 0.28 8.06 -51.93 -0.42 -0.14 16 34 H 0.07 0.85 7.43 -51.93 -0.39 0.47 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.66 6.80 -51.93 -0.35 0.31 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.77 6.18 -51.93 -0.32 1.45 16 40 H 0.02 0.34 6.57 -51.93 -0.34 0.00 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.93 6.45 -51.93 -0.34 0.59 16 43 H 0.04 0.60 6.85 -51.93 -0.36 0.25 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.50 6.30 -51.93 -0.33 0.17 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.02 0.31 6.91 -51.93 -0.36 -0.04 16 48 H 0.07 1.07 8.01 -51.93 -0.42 0.65 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -29.57 358.48 -10.27 -39.84 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -9.27 Total: -0.36 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -0.47 Total: -16.72 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.91 Total: -45.49 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.57 -10.27 -39.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.057 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds