Wall clock time and date at job start Mon Mar 30 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47055 * 2 1 4 4 N 1.46899 * 109.47424 * 119.99511 * 2 1 3 5 5 C 1.46906 * 110.99970 * 84.99923 * 4 2 1 6 6 C 1.52993 * 109.47302 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.53217 * 54.90793 * 6 5 4 8 8 C 1.53119 * 109.50889 * 294.80850 * 6 5 4 9 9 C 1.53113 * 109.16462 * 182.40436 * 8 6 5 10 10 C 1.53037 * 109.28034 * 57.64961 * 9 8 6 11 11 N 1.46844 * 109.52650 * 300.82551 * 10 9 8 12 12 C 1.46904 * 111.00262 * 185.83539 * 11 10 9 13 13 H 1.08999 * 109.47092 * 186.73011 * 12 11 10 14 14 C 1.52994 * 109.47119 * 306.73068 * 12 11 10 15 15 C 1.52997 * 109.46940 * 66.73139 * 12 11 10 16 16 C 1.50699 * 109.47265 * 63.87232 * 15 12 11 17 17 H 1.07995 * 120.00049 * 359.97438 * 16 15 12 18 18 C 1.37879 * 119.99909 * 180.02562 * 16 15 12 19 19 N 1.31521 * 120.00232 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00120 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47509 * 59.99035 * 20 18 16 22 22 H 1.48498 * 109.47363 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46896 * 299.99346 * 20 18 16 24 24 C 1.46848 * 111.19952 * 61.73670 * 11 10 9 25 25 H 1.08995 * 109.47148 * 60.00106 * 1 2 3 26 26 H 1.09006 * 109.46559 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46859 * 300.00008 * 1 2 3 28 28 H 1.09002 * 109.47319 * 239.99898 * 2 1 3 29 29 H 1.09002 * 109.47014 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46902 * 299.99689 * 3 2 1 31 31 H 1.09002 * 109.47140 * 59.99789 * 3 2 1 32 32 H 1.00903 * 111.00653 * 208.95567 * 4 2 1 33 33 H 1.09004 * 109.46690 * 60.00206 * 5 4 2 34 34 H 1.08994 * 109.47019 * 300.00837 * 5 4 2 35 35 H 1.09005 * 109.51842 * 302.30686 * 8 6 5 36 36 H 1.08997 * 109.52146 * 62.43449 * 8 6 5 37 37 H 1.09001 * 109.50670 * 177.59461 * 9 8 6 38 38 H 1.09005 * 109.50086 * 297.67435 * 9 8 6 39 39 H 1.08999 * 109.46538 * 180.80826 * 10 9 8 40 40 H 1.09001 * 109.45933 * 60.83708 * 10 9 8 41 41 H 1.08997 * 109.47057 * 180.02562 * 14 12 11 42 42 H 1.08996 * 109.47603 * 59.99707 * 14 12 11 43 43 H 1.09007 * 109.47216 * 299.99783 * 14 12 11 44 44 H 1.08994 * 109.47375 * 183.87437 * 15 12 11 45 45 H 1.09003 * 109.47013 * 303.87311 * 15 12 11 46 46 H 0.96992 * 120.00154 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.46418 * 58.27788 * 24 11 10 48 48 H 1.09001 * 109.46732 * 178.25481 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 -2.1437 0.9808 6 6 2.5964 -2.8287 2.2486 7 1 1.9728 -2.5427 3.0957 8 6 4.0428 -2.4003 2.5110 9 6 4.5687 -3.1360 3.7465 10 6 4.4596 -4.6456 3.5203 11 7 3.0572 -5.0050 3.2745 12 6 2.8941 -6.4625 3.1902 13 1 1.8728 -6.6971 2.8901 14 6 3.8715 -7.0260 2.1568 15 6 3.1805 -7.0876 4.5570 16 6 2.1586 -6.6052 5.5540 17 1 1.3828 -5.9208 5.2440 18 6 2.2148 -7.0367 6.8623 19 7 3.1599 -7.8697 7.2401 20 14 0.9478 -6.4393 8.0981 21 1 -0.4099 -6.8374 7.6469 22 1 1.2258 -7.0460 9.4247 23 1 1.0198 -4.9599 8.2050 24 6 2.5444 -4.3473 2.0658 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 2.9174 -0.3305 1.4848 33 1 2.7589 -2.3575 0.1532 34 1 1.0872 -2.5186 0.7426 35 1 4.6592 -2.6513 1.6477 36 1 4.0784 -1.3247 2.6837 37 1 5.6119 -2.8675 3.9134 38 1 3.9766 -2.8542 4.6173 39 1 4.8200 -5.1723 4.4039 40 1 5.0633 -4.9281 2.6578 41 1 3.7502 -8.1074 2.0939 42 1 4.8928 -6.7914 2.4567 43 1 3.6675 -6.5807 1.1830 44 1 3.1269 -8.1734 4.4783 45 1 4.1772 -6.7960 4.8882 46 1 3.1992 -8.1736 8.1603 47 1 3.1571 -4.6312 1.2102 48 1 1.5137 -4.6571 1.8931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:10 Heat of formation + Delta-G solvation = -40.092662 kcal Electronic energy + Delta-G solvation = -21694.722317 eV Core-core repulsion = 18782.520367 eV Total energy + Delta-G solvation = -2912.201950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.54390 -38.38062 -36.33021 -34.57688 -33.18976 -31.54858 -30.24640 -29.12100 -28.12317 -26.06288 -25.45853 -24.18908 -23.01642 -21.39670 -20.71108 -20.03231 -18.32931 -17.07770 -16.76096 -16.57411 -16.35134 -15.62448 -15.42446 -15.17303 -14.93007 -14.72191 -14.44935 -14.10365 -13.74548 -13.62917 -13.38263 -13.14156 -13.09236 -12.97349 -12.86180 -12.77749 -12.60483 -12.41269 -12.22940 -12.10857 -11.88961 -11.82091 -11.70183 -11.48313 -11.36092 -11.08279 -11.01787 -10.80366 -10.45559 -9.31564 -8.83520 -8.08812 -6.13232 1.41785 1.44673 1.52180 2.48320 3.01026 3.24998 3.39638 3.85300 3.94613 4.03632 4.09016 4.19313 4.21826 4.40487 4.45278 4.45926 4.51122 4.53136 4.56847 4.63019 4.69378 4.74725 4.83924 4.85725 4.93117 4.98702 4.99873 5.00962 5.04753 5.13343 5.16703 5.23452 5.24767 5.30420 5.34272 5.41514 5.44175 5.53727 5.60271 5.72597 5.91309 6.18499 6.35790 6.52458 6.55302 6.60257 7.00360 7.52353 9.03163 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.004305 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.005145 B = 6503.171070 C = 7072.851662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 C -0.150 4.150 4 N -0.694 5.694 5 C 0.078 3.922 6 C -0.075 4.075 7 H 0.063 0.937 8 C -0.103 4.103 9 C -0.111 4.111 10 C 0.060 3.940 11 N -0.530 5.530 12 C 0.094 3.906 13 H 0.061 0.939 14 C -0.172 4.172 15 C 0.038 3.962 16 C -0.498 4.498 17 H 0.056 0.944 18 C -0.004 4.004 19 N -0.941 5.941 20 Si 0.955 3.045 21 H -0.270 1.270 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.065 3.935 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.345 0.655 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.064 0.936 44 H -0.010 1.010 45 H -0.004 1.004 46 H 0.258 0.742 47 H 0.036 0.964 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 16.102 -16.807 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C -0.207 4.207 4 N -0.328 5.328 5 C -0.052 4.052 6 C -0.094 4.094 7 H 0.081 0.919 8 C -0.140 4.140 9 C -0.149 4.149 10 C -0.067 4.067 11 N -0.254 5.254 12 C -0.014 4.014 13 H 0.080 0.920 14 C -0.231 4.231 15 C 0.001 3.999 16 C -0.536 4.536 17 H 0.074 0.926 18 C -0.200 4.200 19 N -0.583 5.583 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.064 4.064 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.165 0.835 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.008 0.992 45 H 0.014 0.986 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.473 16.169 -15.971 22.732 hybrid contribution 0.693 -0.745 -0.032 1.018 sum 0.220 15.423 -16.003 22.227 Atomic orbital electron populations 1.21793 0.94755 1.01348 1.01824 1.21564 0.96045 0.94932 0.90873 1.21939 1.01059 0.94869 1.02862 1.60510 1.33919 1.03385 1.34985 1.21821 1.00179 0.87842 0.95339 1.21071 0.97054 0.93209 0.98059 0.91893 1.21547 0.95064 1.00088 0.97314 1.21530 1.01096 0.93638 0.98671 1.21995 0.88744 0.96693 0.99310 1.61859 1.19251 1.07664 1.36644 1.21604 0.97847 0.86744 0.95234 0.92035 1.22366 1.00053 1.01420 0.99219 1.19030 0.95583 0.93470 0.91852 1.21447 1.12528 1.25288 0.94367 0.92601 1.25834 0.97859 0.95743 1.00595 1.70085 1.35228 1.35168 1.17853 0.85653 0.79717 0.78556 0.77977 1.19528 1.21209 1.19849 1.22053 0.99436 0.94281 0.90614 0.91342 0.93779 0.92857 0.93949 0.92245 0.90873 0.92205 0.83523 0.94649 0.91591 0.91690 0.90464 0.90504 0.93171 0.93525 0.94635 0.92553 0.93040 0.91680 0.99169 0.98608 0.93289 0.94631 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.42 71.98 0.68 -1.62 16 2 C 0.08 1.21 3.22 44.92 0.14 1.35 16 3 C -0.15 -1.89 9.18 71.98 0.66 -1.23 16 4 N -0.69 -13.37 6.31 -491.56 -3.10 -16.47 16 5 C 0.08 1.63 4.94 86.30 0.43 2.06 16 6 C -0.07 -1.93 2.56 -10.74 -0.03 -1.96 16 7 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 8 C -0.10 -2.38 5.00 30.67 0.15 -2.22 16 9 C -0.11 -3.27 6.09 30.64 0.19 -3.08 16 10 C 0.06 2.15 4.52 86.33 0.39 2.54 16 11 N -0.53 -20.22 4.28 -871.12 -3.73 -23.95 16 12 C 0.09 3.92 2.26 44.91 0.10 4.02 16 13 H 0.06 2.61 7.97 -2.39 -0.02 2.59 16 14 C -0.17 -5.86 8.43 71.98 0.61 -5.25 16 15 C 0.04 2.01 4.37 29.85 0.13 2.14 16 16 C -0.50 -28.94 8.81 25.60 0.23 -28.72 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 19 N -0.94 -58.75 13.29 21.45 0.28 -58.47 16 20 Si 0.95 46.50 29.54 68.60 2.03 48.53 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 24 C 0.06 1.94 4.43 86.33 0.38 2.32 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.04 0.80 7.45 -2.38 -0.02 0.79 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 28 H 0.04 0.67 7.80 -2.39 -0.02 0.65 16 29 H 0.06 0.67 8.12 -2.39 -0.02 0.66 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.34 6.00 6.66 -89.69 -0.60 5.40 16 33 H 0.04 0.68 8.06 -2.38 -0.02 0.66 16 34 H 0.07 1.46 7.43 -2.39 -0.02 1.44 16 35 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 1.53 6.80 -2.39 -0.02 1.51 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.05 2.00 6.18 -2.39 -0.01 1.99 16 40 H 0.04 1.15 6.57 -2.39 -0.02 1.13 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.76 6.45 -2.39 -0.02 1.74 16 43 H 0.06 1.87 6.85 -2.38 -0.02 1.86 16 44 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H 0.00 -0.25 6.30 -2.39 -0.02 -0.26 16 46 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.04 0.97 6.91 -2.39 -0.02 0.96 16 48 H 0.06 1.94 8.01 -2.39 -0.02 1.92 16 Total: -1.00 -64.99 358.48 0.30 -64.69 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.29 Total: 15.12 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 4.52 Total: -29.45 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -6.55 Total: -98.88 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -64.99 0.30 -64.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.596 kcal (2) G-P(sol) polarization free energy of solvation -64.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds