Wall clock time and date at job start Mon Mar 30 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46979 * 2 1 4 4 C 1.52992 * 109.47676 * 120.00111 * 2 1 3 5 5 N 1.46899 * 109.47129 * 64.58994 * 4 2 1 6 6 C 1.46895 * 111.00141 * 215.06490 * 5 4 2 7 7 C 1.53001 * 109.47300 * 75.87210 * 6 5 4 8 8 H 1.09005 * 109.87761 * 295.10485 * 7 6 5 9 9 C 1.54318 * 109.89070 * 174.07420 * 7 6 5 10 10 C 1.55403 * 102.89593 * 218.40662 * 9 7 6 11 11 C 1.54900 * 101.74541 * 35.47858 * 10 9 7 12 12 N 1.47440 * 109.89033 * 56.13214 * 7 6 5 13 13 C 1.46897 * 110.99863 * 91.11049 * 5 4 2 14 14 H 1.09003 * 109.47136 * 179.68928 * 13 5 4 15 15 C 1.52997 * 109.47279 * 59.69254 * 13 5 4 16 16 C 1.53004 * 109.47251 * 299.69139 * 13 5 4 17 17 C 1.50707 * 109.46629 * 297.61904 * 16 13 5 18 18 H 1.07999 * 120.00400 * 359.97438 * 17 16 13 19 19 C 1.37877 * 119.99697 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00145 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 119.99923 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47008 * 90.00235 * 21 19 17 23 23 H 1.48498 * 109.46925 * 210.00242 * 21 19 17 24 24 H 1.48498 * 109.47104 * 330.00112 * 21 19 17 25 25 H 1.08998 * 109.47104 * 294.92647 * 1 2 3 26 26 H 1.09002 * 109.47044 * 174.92725 * 1 2 3 27 27 H 1.09003 * 109.47492 * 54.92647 * 1 2 3 28 28 H 1.09003 * 109.47253 * 240.00466 * 2 1 3 29 29 H 1.08995 * 109.47026 * 60.00233 * 3 2 1 30 30 H 1.08998 * 109.47102 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46753 * 300.00115 * 3 2 1 32 32 H 1.08998 * 109.47578 * 184.59362 * 4 2 1 33 33 H 1.09008 * 109.47095 * 304.59339 * 4 2 1 34 34 H 1.09009 * 109.47246 * 195.87103 * 6 5 4 35 35 H 1.08998 * 109.47302 * 315.86922 * 6 5 4 36 36 H 1.09001 * 110.70260 * 336.68459 * 9 7 6 37 37 H 1.09001 * 110.71053 * 99.92721 * 9 7 6 38 38 H 1.08995 * 110.87324 * 277.38588 * 10 9 7 39 39 H 1.09003 * 111.01905 * 153.63442 * 10 9 7 40 40 H 1.08995 * 110.37602 * 204.18731 * 11 10 9 41 41 H 1.09004 * 110.37265 * 81.84505 * 11 10 9 42 42 H 1.00904 * 110.99945 * 356.15332 * 12 7 6 43 43 H 1.08999 * 109.47526 * 179.97438 * 15 13 5 44 44 H 1.09003 * 109.46770 * 299.99898 * 15 13 5 45 45 H 1.08997 * 109.47455 * 59.99610 * 15 13 5 46 46 H 1.08995 * 109.47063 * 57.61272 * 16 13 5 47 47 H 1.09001 * 109.47252 * 177.62598 * 16 13 5 48 48 H 0.97000 * 120.00269 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6431 -2.1345 1.1950 6 6 1.3341 -2.6463 2.5368 7 6 -0.0357 -2.1267 2.9779 8 1 -0.0039 -1.0424 3.0852 9 6 -0.4362 -2.7755 4.3196 10 6 -1.9617 -3.0162 4.1469 11 6 -2.0562 -3.3730 2.6425 12 7 -1.0585 -2.5026 1.9846 13 6 2.6804 -2.9482 0.5472 14 1 2.3633 -3.9909 0.5253 15 6 3.9873 -2.8291 1.3336 16 6 2.8989 -2.4515 -0.8834 17 6 1.6277 -2.6233 -1.6744 18 1 0.7518 -3.0450 -1.2041 19 6 1.5834 -2.2430 -2.9990 20 7 0.4743 -2.3934 -3.6895 21 14 3.0987 -1.5142 -3.8128 22 1 3.9119 -2.6037 -4.4104 23 1 2.6815 -0.5668 -4.8774 24 1 3.9073 -0.7929 -2.7974 25 1 -0.3633 0.4331 0.9319 26 1 -0.3633 -1.0237 -0.0909 27 1 -0.3634 0.5905 -0.8411 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 3.1269 -0.6505 1.2912 33 1 1.6111 -0.2571 2.1373 34 1 1.3197 -3.7361 2.5156 35 1 2.0950 -2.3066 3.2394 36 1 0.0887 -3.7200 4.4628 37 1 -0.2422 -2.0958 5.1495 38 1 -2.5254 -2.1103 4.3695 39 1 -2.2991 -3.8466 4.7671 40 1 -3.0555 -3.1585 2.2637 41 1 -1.8069 -4.4224 2.4850 42 1 -0.6399 -2.9669 1.1926 43 1 4.7569 -3.4332 0.8532 44 1 4.3044 -1.7864 1.3555 45 1 3.8317 -3.1829 2.3528 46 1 3.1749 -1.3972 -0.8637 47 1 3.6979 -3.0277 -1.3501 48 1 0.4429 -2.1255 -4.6212 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695841891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:13 Heat of formation + Delta-G solvation = 0.288771 kcal Electronic energy + Delta-G solvation = -23087.647984 eV Core-core repulsion = 20177.197104 eV Total energy + Delta-G solvation = -2910.450880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.23285 -37.51203 -34.04106 -32.91796 -31.35069 -29.76580 -28.78153 -27.80003 -26.14008 -25.55068 -23.82496 -22.16642 -20.88122 -19.92553 -19.40834 -18.50698 -16.56942 -16.01182 -15.84522 -15.51537 -14.44418 -14.04954 -13.95823 -13.47555 -13.11132 -13.01977 -12.75610 -12.46126 -12.36063 -12.10850 -11.92347 -11.81420 -11.60982 -11.53320 -11.43724 -11.11968 -10.99602 -10.83561 -10.76935 -10.65774 -10.49784 -10.26644 -9.96067 -9.86810 -9.63346 -9.44918 -9.05549 -8.93243 -8.39483 -7.91161 -7.41315 -5.88091 -3.80673 3.35896 3.44874 3.46723 4.31795 4.55699 4.80974 4.85923 4.94911 5.13670 5.40573 5.45836 5.53092 5.60106 5.65080 5.68996 5.75155 5.78535 5.83803 5.85947 5.89107 5.97526 6.00645 6.07507 6.09625 6.16130 6.19413 6.25693 6.39008 6.46145 6.53526 6.57992 6.65244 6.74728 6.79908 6.91682 7.11217 7.13218 7.32718 7.41235 7.66150 7.72181 7.85816 7.92499 7.99514 8.04335 8.74759 9.25804 9.74726 11.25318 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.006656 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.790390 B = 4205.606933 C = 4359.554573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.111 4.111 3 C -0.146 4.146 4 C 0.069 3.931 5 N -0.501 5.501 6 C 0.037 3.963 7 C 0.088 3.912 8 H 0.076 0.924 9 C -0.140 4.140 10 C -0.127 4.127 11 C 0.043 3.957 12 N -0.664 5.664 13 C 0.096 3.904 14 H 0.071 0.929 15 C -0.189 4.189 16 C -0.017 4.017 17 C -0.481 4.481 18 H 0.082 0.918 19 C 0.067 3.933 20 N -0.902 5.902 21 Si 0.860 3.140 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.268 1.268 25 H 0.025 0.975 26 H 0.083 0.917 27 H 0.029 0.971 28 H 0.122 0.878 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.029 0.971 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.363 0.637 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.042 0.958 46 H 0.027 0.973 47 H 0.009 0.991 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 0.920 14.573 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.129 4.129 3 C -0.204 4.204 4 C -0.058 4.058 5 N -0.224 5.224 6 C -0.093 4.093 7 C -0.022 4.022 8 H 0.094 0.906 9 C -0.179 4.179 10 C -0.166 4.166 11 C -0.086 4.086 12 N -0.298 5.298 13 C -0.012 4.012 14 H 0.089 0.911 15 C -0.248 4.248 16 C -0.054 4.054 17 C -0.519 4.519 18 H 0.100 0.900 19 C -0.133 4.133 20 N -0.542 5.542 21 Si 0.689 3.311 22 H -0.208 1.208 23 H -0.217 1.217 24 H -0.192 1.192 25 H 0.044 0.956 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.139 0.861 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.184 0.816 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.045 0.955 47 H 0.027 0.973 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.090 1.508 14.133 14.213 hybrid contribution 2.158 -0.312 0.060 2.182 sum 2.069 1.196 14.193 14.392 Atomic orbital electron populations 1.21484 0.94402 1.03416 0.97828 1.21598 0.97315 0.93348 1.00687 1.21870 0.99763 0.98216 1.00541 1.22134 0.97333 0.88431 0.97952 1.61963 1.42364 1.01970 1.16076 1.22644 0.96224 0.99202 0.91236 1.22204 0.90390 0.99824 0.89820 0.90579 1.22907 0.96231 1.00659 0.98068 1.22704 0.96000 1.01264 0.96583 1.22822 0.97699 0.94991 0.93106 1.61905 1.14649 1.44328 1.08915 1.21730 0.87001 0.97093 0.95384 0.91070 1.22593 1.00734 1.01594 0.99893 1.19932 0.97873 0.96501 0.91068 1.20934 0.97004 1.39933 0.94066 0.89978 1.24938 0.94982 0.95977 0.97393 1.69889 1.26176 1.49131 1.09005 0.87101 0.84759 0.79585 0.79690 1.20791 1.21663 1.19234 0.95572 0.89805 0.95191 0.86086 0.94085 0.94067 0.93208 0.94783 0.93196 0.91778 0.95270 0.91774 0.91478 0.91120 0.91656 0.90933 0.94754 0.81631 0.92694 0.92672 0.93931 0.95515 0.97301 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 9.02 37.16 0.34 -1.92 16 2 C -0.11 -2.13 2.38 -90.62 -0.22 -2.35 16 3 C -0.15 -2.46 9.19 37.16 0.34 -2.11 16 4 C 0.07 1.18 3.60 -3.83 -0.01 1.17 16 5 N -0.50 -8.62 2.73 -226.65 -0.62 -9.24 16 6 C 0.04 0.53 3.31 -3.83 -0.01 0.52 16 7 C 0.09 1.22 3.50 -66.73 -0.23 0.99 16 8 H 0.08 1.15 7.05 -51.93 -0.37 0.78 16 9 C -0.14 -1.59 6.49 -24.77 -0.16 -1.75 16 10 C -0.13 -1.41 7.08 -24.45 -0.17 -1.59 16 11 C 0.04 0.57 7.58 -2.30 -0.02 0.55 16 12 N -0.66 -10.35 6.86 -103.82 -0.71 -11.06 16 13 C 0.10 1.78 2.27 -67.71 -0.15 1.62 16 14 H 0.07 1.37 7.97 -51.93 -0.41 0.95 16 15 C -0.19 -2.97 8.66 37.16 0.32 -2.65 16 16 C -0.02 -0.37 2.97 -27.88 -0.08 -0.45 16 17 C -0.48 -12.57 7.61 -34.44 -0.26 -12.83 16 18 H 0.08 2.35 7.97 -52.49 -0.42 1.93 16 19 C 0.07 1.87 5.40 -17.82 -0.10 1.77 16 20 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 21 Si 0.86 21.31 27.47 -169.99 -4.67 16.64 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 1.85 7.27 -51.93 -0.38 1.47 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.12 2.77 3.55 -51.93 -0.18 2.58 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.58 5.31 -51.93 -0.28 0.31 16 33 H 0.05 0.80 6.56 -51.92 -0.34 0.46 16 34 H 0.06 0.93 7.73 -51.92 -0.40 0.53 16 35 H 0.03 0.40 7.36 -51.93 -0.38 0.02 16 36 H 0.06 0.70 7.79 -51.93 -0.40 0.30 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.36 6.50 7.47 -39.29 -0.29 6.20 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.87 5.96 -51.93 -0.31 0.56 16 45 H 0.04 0.60 6.98 -51.93 -0.36 0.23 16 46 H 0.03 0.61 4.28 -51.93 -0.22 0.39 16 47 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -27.27 349.53 -9.35 -36.62 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.96 Total: 7.01 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -0.42 Total: -19.03 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.56 Total: -46.50 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.27 -9.35 -36.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.904 kcal (2) G-P(sol) polarization free energy of solvation -27.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds