Wall clock time and date at job start Mon Mar 30 2020 06:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46979 * 2 1 4 4 C 1.52992 * 109.47676 * 120.00111 * 2 1 3 5 5 N 1.46899 * 109.47129 * 64.58994 * 4 2 1 6 6 C 1.46895 * 111.00141 * 215.06490 * 5 4 2 7 7 C 1.53001 * 109.47300 * 75.87210 * 6 5 4 8 8 H 1.09005 * 109.87761 * 295.10485 * 7 6 5 9 9 C 1.54318 * 109.89070 * 174.07420 * 7 6 5 10 10 C 1.55403 * 102.89593 * 218.40662 * 9 7 6 11 11 C 1.54900 * 101.74541 * 35.47858 * 10 9 7 12 12 N 1.47440 * 109.89033 * 56.13214 * 7 6 5 13 13 C 1.46897 * 110.99863 * 91.11049 * 5 4 2 14 14 H 1.09003 * 109.47136 * 179.68928 * 13 5 4 15 15 C 1.52997 * 109.47279 * 59.69254 * 13 5 4 16 16 C 1.53004 * 109.47251 * 299.69139 * 13 5 4 17 17 C 1.50707 * 109.46629 * 297.61904 * 16 13 5 18 18 H 1.07999 * 120.00400 * 359.97438 * 17 16 13 19 19 C 1.37877 * 119.99697 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00145 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 119.99923 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47008 * 90.00235 * 21 19 17 23 23 H 1.48498 * 109.46925 * 210.00242 * 21 19 17 24 24 H 1.48498 * 109.47104 * 330.00112 * 21 19 17 25 25 H 1.08998 * 109.47104 * 294.92647 * 1 2 3 26 26 H 1.09002 * 109.47044 * 174.92725 * 1 2 3 27 27 H 1.09003 * 109.47492 * 54.92647 * 1 2 3 28 28 H 1.09003 * 109.47253 * 240.00466 * 2 1 3 29 29 H 1.08995 * 109.47026 * 60.00233 * 3 2 1 30 30 H 1.08998 * 109.47102 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46753 * 300.00115 * 3 2 1 32 32 H 1.08998 * 109.47578 * 184.59362 * 4 2 1 33 33 H 1.09008 * 109.47095 * 304.59339 * 4 2 1 34 34 H 1.09009 * 109.47246 * 195.87103 * 6 5 4 35 35 H 1.08998 * 109.47302 * 315.86922 * 6 5 4 36 36 H 1.09001 * 110.70260 * 336.68459 * 9 7 6 37 37 H 1.09001 * 110.71053 * 99.92721 * 9 7 6 38 38 H 1.08995 * 110.87324 * 277.38588 * 10 9 7 39 39 H 1.09003 * 111.01905 * 153.63442 * 10 9 7 40 40 H 1.08995 * 110.37602 * 204.18731 * 11 10 9 41 41 H 1.09004 * 110.37265 * 81.84505 * 11 10 9 42 42 H 1.00904 * 110.99945 * 356.15332 * 12 7 6 43 43 H 1.08999 * 109.47526 * 179.97438 * 15 13 5 44 44 H 1.09003 * 109.46770 * 299.99898 * 15 13 5 45 45 H 1.08997 * 109.47455 * 59.99610 * 15 13 5 46 46 H 1.08995 * 109.47063 * 57.61272 * 16 13 5 47 47 H 1.09001 * 109.47252 * 177.62598 * 16 13 5 48 48 H 0.97000 * 120.00269 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6431 -2.1345 1.1950 6 6 1.3341 -2.6463 2.5368 7 6 -0.0357 -2.1267 2.9779 8 1 -0.0039 -1.0424 3.0852 9 6 -0.4362 -2.7755 4.3196 10 6 -1.9617 -3.0162 4.1469 11 6 -2.0562 -3.3730 2.6425 12 7 -1.0585 -2.5026 1.9846 13 6 2.6804 -2.9482 0.5472 14 1 2.3633 -3.9909 0.5253 15 6 3.9873 -2.8291 1.3336 16 6 2.8989 -2.4515 -0.8834 17 6 1.6277 -2.6233 -1.6744 18 1 0.7518 -3.0450 -1.2041 19 6 1.5834 -2.2430 -2.9990 20 7 0.4743 -2.3934 -3.6895 21 14 3.0987 -1.5142 -3.8128 22 1 3.9119 -2.6037 -4.4104 23 1 2.6815 -0.5668 -4.8774 24 1 3.9073 -0.7929 -2.7974 25 1 -0.3633 0.4331 0.9319 26 1 -0.3633 -1.0237 -0.0909 27 1 -0.3634 0.5905 -0.8411 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 3.1269 -0.6505 1.2912 33 1 1.6111 -0.2571 2.1373 34 1 1.3197 -3.7361 2.5156 35 1 2.0950 -2.3066 3.2394 36 1 0.0887 -3.7200 4.4628 37 1 -0.2422 -2.0958 5.1495 38 1 -2.5254 -2.1103 4.3695 39 1 -2.2991 -3.8466 4.7671 40 1 -3.0555 -3.1585 2.2637 41 1 -1.8069 -4.4224 2.4850 42 1 -0.6399 -2.9669 1.1926 43 1 4.7569 -3.4332 0.8532 44 1 4.3044 -1.7864 1.3555 45 1 3.8317 -3.1829 2.3528 46 1 3.1749 -1.3972 -0.8637 47 1 3.6979 -3.0277 -1.3501 48 1 0.4429 -2.1255 -4.6212 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695841891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:12 Heat of formation + Delta-G solvation = -15.895044 kcal Electronic energy + Delta-G solvation = -23088.349767 eV Core-core repulsion = 20177.197104 eV Total energy + Delta-G solvation = -2911.152662 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51234 -38.72692 -35.51389 -34.83338 -32.91214 -30.80207 -30.17308 -29.33677 -27.64629 -26.85240 -25.27646 -23.82944 -21.87084 -21.14486 -20.86903 -19.97073 -18.65403 -17.32511 -16.97972 -16.68112 -16.23729 -15.50082 -15.32478 -14.88471 -14.66076 -14.35174 -14.05917 -13.97507 -13.76959 -13.61035 -13.42961 -13.13525 -13.01772 -12.84552 -12.67526 -12.51833 -12.36581 -12.29294 -12.12209 -11.90662 -11.75719 -11.63459 -11.49899 -11.41887 -11.27359 -11.13009 -10.94944 -10.59525 -10.54335 -9.09676 -8.70246 -8.05277 -5.99250 1.37043 1.41037 1.48336 2.47806 3.06785 3.32658 3.68667 3.89357 3.93759 4.04284 4.15883 4.31313 4.34194 4.41275 4.44822 4.55213 4.57513 4.64501 4.69175 4.73961 4.77977 4.80703 4.86811 4.99635 5.00648 5.02419 5.08809 5.14034 5.16503 5.18004 5.24092 5.24825 5.28185 5.32366 5.44181 5.50277 5.55240 5.67853 5.84802 5.99366 6.09046 6.30370 6.50653 6.57402 6.67651 6.71845 7.08449 7.58581 9.11420 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.006656 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.790390 B = 4205.606933 C = 4359.554573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.114 4.114 3 C -0.141 4.141 4 C 0.076 3.924 5 N -0.519 5.519 6 C 0.044 3.956 7 C 0.089 3.911 8 H 0.067 0.933 9 C -0.132 4.132 10 C -0.119 4.119 11 C 0.038 3.962 12 N -0.683 5.683 13 C 0.100 3.900 14 H 0.058 0.942 15 C -0.179 4.179 16 C -0.014 4.014 17 C -0.456 4.456 18 H 0.046 0.954 19 C 0.010 3.990 20 N -0.952 5.952 21 Si 0.916 3.084 22 H -0.278 1.278 23 H -0.297 1.297 24 H -0.249 1.249 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.011 0.989 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.033 0.967 42 H 0.344 0.656 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.030 0.970 47 H 0.007 0.993 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 1.529 17.326 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.133 4.133 3 C -0.199 4.199 4 C -0.051 4.051 5 N -0.241 5.241 6 C -0.085 4.085 7 C -0.021 4.021 8 H 0.085 0.915 9 C -0.171 4.171 10 C -0.157 4.157 11 C -0.091 4.091 12 N -0.315 5.315 13 C -0.008 4.008 14 H 0.076 0.924 15 C -0.237 4.237 16 C -0.051 4.051 17 C -0.495 4.495 18 H 0.064 0.936 19 C -0.185 4.185 20 N -0.596 5.596 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.224 1.224 24 H -0.172 1.172 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.163 0.837 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.025 0.975 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.665 2.118 16.925 17.139 hybrid contribution 1.514 -0.537 -0.766 1.780 sum 3.179 1.580 16.159 16.544 Atomic orbital electron populations 1.21316 0.95355 1.01311 0.97798 1.21524 0.96426 0.95021 1.00282 1.21804 1.00390 0.96451 1.01265 1.22045 0.97679 0.88143 0.97258 1.61829 1.42199 1.02054 1.18046 1.22623 0.96955 0.99033 0.89921 1.22212 0.89700 0.99398 0.90815 0.91530 1.22871 0.96146 1.01160 0.96880 1.22674 0.96071 1.02078 0.94873 1.22892 0.96804 0.94640 0.94762 1.61888 1.15544 1.44813 1.09212 1.21517 0.89164 0.96323 0.93839 0.92355 1.22451 0.98745 1.02037 1.00495 1.19881 0.95427 0.96702 0.93132 1.21052 0.97340 1.37254 0.93833 0.93601 1.25634 0.97417 0.97113 0.98369 1.70050 1.28568 1.51746 1.09198 0.86182 0.81747 0.78919 0.78870 1.20359 1.22365 1.17242 0.93936 0.92640 0.96960 0.89845 0.91923 0.92997 0.93980 0.94037 0.91601 0.91952 0.93500 0.91010 0.89696 0.91015 0.89598 0.91504 0.94853 0.83679 0.92195 0.92330 0.91826 0.95237 0.97457 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.02 9.02 71.98 0.65 -3.37 16 2 C -0.11 -4.28 2.38 -10.79 -0.03 -4.31 16 3 C -0.14 -4.47 9.19 71.99 0.66 -3.81 16 4 C 0.08 2.45 3.60 86.30 0.31 2.76 16 5 N -0.52 -17.27 2.73 -870.99 -2.38 -19.65 16 6 C 0.04 1.17 3.31 86.30 0.29 1.46 16 7 C 0.09 2.32 3.50 45.26 0.16 2.47 16 8 H 0.07 1.86 7.05 -2.38 -0.02 1.85 16 9 C -0.13 -2.60 6.49 31.87 0.21 -2.39 16 10 C -0.12 -2.36 7.08 32.07 0.23 -2.13 16 11 C 0.04 0.99 7.58 86.77 0.66 1.65 16 12 N -0.68 -21.30 6.86 -482.37 -3.31 -24.61 16 13 C 0.10 3.58 2.27 44.92 0.10 3.68 16 14 H 0.06 2.22 7.97 -2.39 -0.02 2.20 16 15 C -0.18 -5.04 8.66 71.98 0.62 -4.41 16 16 C -0.01 -0.62 2.97 29.85 0.09 -0.53 16 17 C -0.46 -24.50 7.61 25.60 0.19 -24.31 16 18 H 0.05 2.76 7.97 -2.91 -0.02 2.74 16 19 C 0.01 0.55 5.40 84.66 0.46 1.00 16 20 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 21 Si 0.92 44.45 27.47 68.60 1.88 46.33 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 2.53 7.27 -2.39 -0.02 2.52 16 27 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.08 3.82 3.55 -2.39 -0.01 3.81 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.04 1.29 5.31 -2.39 -0.01 1.27 16 33 H 0.07 1.91 6.56 -2.38 -0.02 1.90 16 34 H 0.06 1.70 7.73 -2.38 -0.02 1.68 16 35 H 0.05 1.11 7.36 -2.39 -0.02 1.09 16 36 H 0.07 1.33 7.79 -2.39 -0.02 1.31 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.34 12.82 7.47 -89.69 -0.67 12.15 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.63 5.96 -2.39 -0.01 1.61 16 45 H 0.06 1.54 6.98 -2.39 -0.02 1.52 16 46 H 0.03 1.31 4.28 -2.39 -0.01 1.30 16 47 H 0.01 0.32 7.57 -2.39 -0.02 0.30 16 48 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -60.94 349.53 1.28 -59.67 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.18 Total: 29.64 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 4.60 Total: -32.24 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -5.39 Total: -103.40 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -60.94 1.28 -59.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.771 kcal (2) G-P(sol) polarization free energy of solvation -60.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds