Wall clock time and date at job start Mon Mar 30 2020 06:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46720 * 2 1 4 4 N 1.46900 * 109.47176 * 240.00102 * 2 1 3 5 5 C 1.46904 * 110.99798 * 204.99804 * 4 2 1 6 6 C 1.52991 * 109.47194 * 179.97438 * 5 4 2 7 7 C 1.53122 * 109.52450 * 294.68512 * 6 5 4 8 8 C 1.53039 * 109.27922 * 182.44439 * 7 6 5 9 9 N 1.46841 * 109.52769 * 59.17274 * 8 7 6 10 10 C 1.46897 * 111.00181 * 174.16059 * 9 8 7 11 11 H 1.09005 * 109.47243 * 312.95638 * 10 9 8 12 12 C 1.53003 * 109.47232 * 72.95707 * 10 9 8 13 13 C 1.53001 * 109.47390 * 192.95944 * 10 9 8 14 14 C 1.50700 * 109.47016 * 63.54465 * 13 10 9 15 15 H 1.07994 * 120.00178 * 5.07089 * 14 13 10 16 16 C 1.37877 * 119.99679 * 185.07140 * 14 13 10 17 17 N 1.31514 * 119.99912 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00146 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47059 * 90.00092 * 18 16 14 20 20 H 1.48507 * 109.46895 * 210.00344 * 18 16 14 21 21 H 1.48501 * 109.46879 * 329.99953 * 18 16 14 22 22 C 1.46847 * 111.20030 * 298.26311 * 9 8 7 23 23 C 1.53036 * 109.52479 * 61.74107 * 22 9 8 24 24 H 1.09005 * 109.47421 * 60.00141 * 1 2 3 25 25 H 1.09003 * 109.47361 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47615 * 300.00219 * 1 2 3 27 27 H 1.09001 * 109.46932 * 119.99827 * 2 1 3 28 28 H 1.09008 * 109.46885 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47277 * 299.99616 * 3 2 1 30 30 H 1.08997 * 109.47363 * 60.00292 * 3 2 1 31 31 H 1.00896 * 111.00362 * 81.04966 * 4 2 1 32 32 H 1.09002 * 109.46967 * 300.00139 * 5 4 2 33 33 H 1.09002 * 109.47031 * 59.99643 * 5 4 2 34 34 H 1.09003 * 109.52466 * 54.87396 * 6 5 4 35 35 H 1.09004 * 109.49911 * 302.38151 * 7 6 5 36 36 H 1.08999 * 109.50323 * 62.49690 * 7 6 5 37 37 H 1.09003 * 109.45716 * 299.15701 * 8 7 6 38 38 H 1.09001 * 109.46144 * 179.19916 * 8 7 6 39 39 H 1.08998 * 109.46835 * 60.00124 * 12 10 9 40 40 H 1.08999 * 109.47332 * 180.02562 * 12 10 9 41 41 H 1.09001 * 109.46584 * 300.00441 * 12 10 9 42 42 H 1.09003 * 109.47315 * 183.54527 * 13 10 9 43 43 H 1.08998 * 109.46675 * 303.54223 * 13 10 9 44 44 H 0.97005 * 120.00255 * 180.02562 * 17 16 14 45 45 H 1.09000 * 109.46048 * 301.72193 * 22 9 8 46 46 H 1.09002 * 109.45901 * 181.75710 * 22 9 8 47 47 H 1.09000 * 109.50298 * 180.88018 * 23 22 9 48 48 H 1.08996 * 109.50661 * 60.75920 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 3.3670 -1.2354 -0.9806 6 6 3.8418 -1.9481 -2.2484 7 6 2.9579 -3.1709 -2.5095 8 6 3.4749 -3.9138 -3.7436 9 7 4.8647 -4.3311 -3.5189 10 6 5.3491 -5.1665 -4.6258 11 1 4.6050 -5.9282 -4.8588 12 6 5.5871 -4.2920 -5.8585 13 6 6.6602 -5.8421 -4.2190 14 6 6.4081 -6.7705 -3.0589 15 1 5.4005 -6.9314 -2.7052 16 6 7.4639 -7.4143 -2.4492 17 7 7.2438 -8.2248 -1.4372 18 14 9.2067 -7.1365 -3.0615 19 1 9.8096 -5.9901 -2.3353 20 1 10.0169 -8.3573 -2.8194 21 1 9.1789 -6.8414 -4.5166 22 6 5.7408 -3.1707 -3.3128 23 6 5.2916 -2.4057 -2.0658 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.0020 -0.0816 -2.0022 32 1 4.0523 -0.4218 -0.7425 33 1 3.3431 -1.9443 -0.1530 34 1 3.7794 -1.2649 -3.0955 35 1 2.9902 -3.8344 -1.6453 36 1 1.9314 -2.8477 -2.6827 37 1 3.4293 -3.2541 -4.6101 38 1 2.8562 -4.7930 -3.9238 39 1 6.3312 -3.5304 -5.6255 40 1 5.9461 -4.9120 -6.6800 41 1 4.6530 -3.8107 -6.1482 42 1 7.0522 -6.4118 -5.0616 43 1 7.3846 -5.0824 -3.9256 44 1 7.9866 -8.6776 -1.0079 45 1 5.6847 -2.5145 -4.1814 46 1 6.7680 -3.5103 -3.1802 47 1 5.9324 -1.5357 -1.9221 48 1 5.3605 -3.0571 -1.1947 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695902385.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:36 Heat of formation + Delta-G solvation = -18.492183 kcal Electronic energy + Delta-G solvation = -21639.358162 eV Core-core repulsion = 18728.092879 eV Total energy + Delta-G solvation = -2911.265283 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.19676 -37.53025 -35.13347 -32.61436 -31.43428 -30.48201 -29.23611 -27.71602 -27.35199 -25.38462 -22.92303 -22.72027 -21.50065 -20.99967 -19.58950 -18.58241 -16.51708 -15.88061 -15.51994 -15.15497 -14.75341 -14.49982 -14.04358 -13.88373 -13.76633 -13.43824 -13.31851 -12.64389 -12.52418 -12.48342 -12.31767 -12.15729 -11.99470 -11.70169 -11.59303 -11.51685 -11.34029 -11.17320 -11.03923 -10.84817 -10.50881 -10.38660 -10.19135 -10.00429 -9.78990 -9.60846 -9.44058 -8.95694 -8.46228 -8.37460 -7.38067 -5.86291 -3.79496 3.37920 3.45655 3.48411 4.03501 4.57323 4.59214 4.67570 4.88401 4.96411 5.07389 5.12169 5.24552 5.37271 5.46892 5.50884 5.59090 5.59707 5.61981 5.69726 5.72791 5.75580 5.78168 5.86459 5.88522 5.92974 5.96905 6.00766 6.09728 6.12043 6.24404 6.31578 6.38416 6.47005 6.55779 6.60544 6.66535 6.79272 6.87575 6.98984 7.20649 7.30422 7.37831 7.88996 7.95538 8.06003 8.77315 9.26440 9.76941 11.27947 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.025478 B = 0.004017 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.732406 B = 6968.062799 C = 7326.960795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.077 3.923 3 C -0.182 4.182 4 N -0.682 5.682 5 C 0.065 3.935 6 C -0.082 4.082 7 C -0.098 4.098 8 C 0.054 3.946 9 N -0.506 5.506 10 C 0.096 3.904 11 H 0.073 0.927 12 C -0.186 4.186 13 C -0.005 4.005 14 C -0.486 4.486 15 H 0.078 0.922 16 C 0.061 3.939 17 N -0.909 5.909 18 Si 0.872 3.128 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.269 1.269 22 C 0.060 3.940 23 C -0.111 4.111 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.337 0.663 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.019 0.981 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.259 0.741 45 H 0.021 0.979 46 H 0.079 0.921 47 H 0.055 0.945 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 18.313 -1.067 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.241 4.241 4 N -0.312 5.312 5 C -0.064 4.064 6 C -0.101 4.101 7 C -0.136 4.136 8 C -0.074 4.074 9 N -0.230 5.230 10 C -0.013 4.013 11 H 0.091 0.909 12 C -0.245 4.245 13 C -0.042 4.042 14 C -0.524 4.524 15 H 0.096 0.904 16 C -0.138 4.138 17 N -0.549 5.549 18 Si 0.700 3.300 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.194 1.194 22 C -0.068 4.068 23 C -0.149 4.149 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.037 0.963 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.068 0.932 45 H 0.040 0.960 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.035 17.305 -0.353 20.007 hybrid contribution 1.635 1.468 -0.985 2.408 sum -8.400 18.773 -1.338 20.610 Atomic orbital electron populations 1.21758 0.94525 1.02333 1.01056 1.21557 0.95760 0.92146 0.93879 1.22518 1.01272 0.98153 1.02187 1.60599 1.25055 1.40226 1.05344 1.22068 0.88018 0.97593 0.98764 1.21173 0.95592 0.96982 0.96321 1.21490 0.98070 0.95533 0.98511 1.22100 0.91051 0.98270 0.96003 1.61970 1.00350 1.18165 1.42492 1.21676 0.99448 0.93629 0.86504 0.90868 1.22554 1.00535 1.01015 1.00366 1.19661 0.91915 0.95482 0.97188 1.21030 0.95722 1.22804 1.12837 0.90418 1.24999 0.98424 0.95384 0.95005 1.69914 1.31251 1.30546 1.23232 0.86913 0.85962 0.77434 0.79682 1.20632 1.21700 1.19401 1.22012 0.98315 0.91096 0.95416 1.21610 0.94523 0.99037 0.99763 0.92912 0.91897 0.92797 0.90572 0.92822 0.92580 0.92224 0.84513 0.95632 0.90776 0.92329 0.91246 0.91373 0.96273 0.91390 0.92912 0.92675 0.93873 0.96732 0.96992 0.93151 0.96049 0.90256 0.92644 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.52 37.16 0.35 -0.78 16 2 C 0.08 0.68 3.20 -67.71 -0.22 0.46 16 3 C -0.18 -1.40 9.16 37.16 0.34 -1.06 16 4 N -0.68 -6.88 5.77 -106.73 -0.62 -7.49 16 5 C 0.06 0.73 4.88 -3.83 -0.02 0.71 16 6 C -0.08 -1.05 2.40 -90.50 -0.22 -1.26 16 7 C -0.10 -1.41 5.24 -26.65 -0.14 -1.55 16 8 C 0.05 0.87 5.18 -3.84 -0.02 0.85 16 9 N -0.51 -9.62 4.26 -226.69 -0.97 -10.59 16 10 C 0.10 1.91 2.26 -67.71 -0.15 1.76 16 11 H 0.07 1.51 7.93 -51.93 -0.41 1.10 16 12 C -0.19 -3.07 8.40 37.16 0.31 -2.76 16 13 C -0.01 -0.12 3.47 -27.88 -0.10 -0.22 16 14 C -0.49 -13.89 9.35 -34.44 -0.32 -14.21 16 15 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 16 C 0.06 1.80 5.47 -17.82 -0.10 1.71 16 17 N -0.91 -28.59 13.96 55.43 0.77 -27.82 16 18 Si 0.87 22.11 27.37 -169.99 -4.65 17.45 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.27 -6.55 6.69 56.52 0.38 -6.18 16 22 C 0.06 1.03 4.47 -3.83 -0.02 1.01 16 23 C -0.11 -1.65 5.38 -26.65 -0.14 -1.79 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.73 7.80 -51.93 -0.40 0.32 16 28 H 0.05 0.44 7.45 -51.92 -0.39 0.05 16 29 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.34 3.14 8.47 -39.29 -0.33 2.81 16 32 H 0.03 0.28 7.44 -51.93 -0.39 -0.11 16 33 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 0.90 7.84 -51.93 -0.41 0.50 16 37 H 0.02 0.29 6.98 -51.93 -0.36 -0.07 16 38 H 0.07 1.11 7.98 -51.93 -0.41 0.70 16 39 H 0.05 0.85 6.44 -51.93 -0.33 0.52 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.64 6.93 -51.93 -0.36 0.28 16 42 H 0.01 0.35 7.55 -51.93 -0.39 -0.04 16 43 H 0.01 0.29 5.54 -51.93 -0.29 0.00 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.02 0.34 6.57 -51.93 -0.34 0.00 16 46 H 0.08 1.53 6.28 -51.93 -0.33 1.20 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -30.23 357.60 -9.88 -40.10 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -9.37 Total: 0.08 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -0.43 Total: -17.13 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.81 Total: -45.90 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.65 Total: 17.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.23 -9.88 -40.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695902385.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.612 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds