Wall clock time and date at job start Mon Mar 30 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46720 * 2 1 4 4 N 1.46900 * 109.47176 * 240.00102 * 2 1 3 5 5 C 1.46904 * 110.99798 * 204.99804 * 4 2 1 6 6 C 1.52991 * 109.47194 * 179.97438 * 5 4 2 7 7 C 1.53122 * 109.52450 * 294.68512 * 6 5 4 8 8 C 1.53039 * 109.27922 * 182.44439 * 7 6 5 9 9 N 1.46841 * 109.52769 * 59.17274 * 8 7 6 10 10 C 1.46897 * 111.00181 * 174.16059 * 9 8 7 11 11 H 1.09005 * 109.47243 * 312.95638 * 10 9 8 12 12 C 1.53003 * 109.47232 * 72.95707 * 10 9 8 13 13 C 1.53001 * 109.47390 * 192.95944 * 10 9 8 14 14 C 1.50700 * 109.47016 * 63.54465 * 13 10 9 15 15 H 1.07994 * 120.00178 * 5.07089 * 14 13 10 16 16 C 1.37877 * 119.99679 * 185.07140 * 14 13 10 17 17 N 1.31514 * 119.99912 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00146 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47059 * 90.00092 * 18 16 14 20 20 H 1.48507 * 109.46895 * 210.00344 * 18 16 14 21 21 H 1.48501 * 109.46879 * 329.99953 * 18 16 14 22 22 C 1.46847 * 111.20030 * 298.26311 * 9 8 7 23 23 C 1.53036 * 109.52479 * 61.74107 * 22 9 8 24 24 H 1.09005 * 109.47421 * 60.00141 * 1 2 3 25 25 H 1.09003 * 109.47361 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47615 * 300.00219 * 1 2 3 27 27 H 1.09001 * 109.46932 * 119.99827 * 2 1 3 28 28 H 1.09008 * 109.46885 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47277 * 299.99616 * 3 2 1 30 30 H 1.08997 * 109.47363 * 60.00292 * 3 2 1 31 31 H 1.00896 * 111.00362 * 81.04966 * 4 2 1 32 32 H 1.09002 * 109.46967 * 300.00139 * 5 4 2 33 33 H 1.09002 * 109.47031 * 59.99643 * 5 4 2 34 34 H 1.09003 * 109.52466 * 54.87396 * 6 5 4 35 35 H 1.09004 * 109.49911 * 302.38151 * 7 6 5 36 36 H 1.08999 * 109.50323 * 62.49690 * 7 6 5 37 37 H 1.09003 * 109.45716 * 299.15701 * 8 7 6 38 38 H 1.09001 * 109.46144 * 179.19916 * 8 7 6 39 39 H 1.08998 * 109.46835 * 60.00124 * 12 10 9 40 40 H 1.08999 * 109.47332 * 180.02562 * 12 10 9 41 41 H 1.09001 * 109.46584 * 300.00441 * 12 10 9 42 42 H 1.09003 * 109.47315 * 183.54527 * 13 10 9 43 43 H 1.08998 * 109.46675 * 303.54223 * 13 10 9 44 44 H 0.97005 * 120.00255 * 180.02562 * 17 16 14 45 45 H 1.09000 * 109.46048 * 301.72193 * 22 9 8 46 46 H 1.09002 * 109.45901 * 181.75710 * 22 9 8 47 47 H 1.09000 * 109.50298 * 180.88018 * 23 22 9 48 48 H 1.08996 * 109.50661 * 60.75920 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 3.3670 -1.2354 -0.9806 6 6 3.8418 -1.9481 -2.2484 7 6 2.9579 -3.1709 -2.5095 8 6 3.4749 -3.9138 -3.7436 9 7 4.8647 -4.3311 -3.5189 10 6 5.3491 -5.1665 -4.6258 11 1 4.6050 -5.9282 -4.8588 12 6 5.5871 -4.2920 -5.8585 13 6 6.6602 -5.8421 -4.2190 14 6 6.4081 -6.7705 -3.0589 15 1 5.4005 -6.9314 -2.7052 16 6 7.4639 -7.4143 -2.4492 17 7 7.2438 -8.2248 -1.4372 18 14 9.2067 -7.1365 -3.0615 19 1 9.8096 -5.9901 -2.3353 20 1 10.0169 -8.3573 -2.8194 21 1 9.1789 -6.8414 -4.5166 22 6 5.7408 -3.1707 -3.3128 23 6 5.2916 -2.4057 -2.0658 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.0020 -0.0816 -2.0022 32 1 4.0523 -0.4218 -0.7425 33 1 3.3431 -1.9443 -0.1530 34 1 3.7794 -1.2649 -3.0955 35 1 2.9902 -3.8344 -1.6453 36 1 1.9314 -2.8477 -2.6827 37 1 3.4293 -3.2541 -4.6101 38 1 2.8562 -4.7930 -3.9238 39 1 6.3312 -3.5304 -5.6255 40 1 5.9461 -4.9120 -6.6800 41 1 4.6530 -3.8107 -6.1482 42 1 7.0522 -6.4118 -5.0616 43 1 7.3846 -5.0824 -3.9256 44 1 7.9866 -8.6776 -1.0079 45 1 5.6847 -2.5145 -4.1814 46 1 6.7680 -3.5103 -3.1802 47 1 5.9324 -1.5357 -1.9221 48 1 5.3605 -3.0571 -1.1947 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695902385.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:35 Heat of formation + Delta-G solvation = -38.034603 kcal Electronic energy + Delta-G solvation = -21640.205585 eV Core-core repulsion = 18728.092879 eV Total energy + Delta-G solvation = -2912.112706 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48623 -38.47015 -36.40836 -34.60699 -32.76981 -31.74231 -30.57641 -29.39320 -27.96635 -26.52420 -24.73509 -24.00105 -22.80752 -21.78234 -20.93979 -19.97680 -18.75781 -17.09425 -16.50343 -16.30785 -16.13846 -15.69667 -15.56812 -15.20722 -14.83660 -14.62536 -14.38711 -14.28275 -13.95781 -13.70394 -13.60270 -13.20412 -13.15041 -13.02660 -12.85490 -12.64556 -12.51685 -12.45368 -12.13834 -11.98388 -11.89644 -11.74836 -11.66496 -11.45816 -11.36477 -11.28101 -11.08423 -10.81561 -10.64287 -9.25000 -8.78191 -8.15742 -6.14068 1.36723 1.38541 1.49754 2.42893 3.12442 3.22803 3.28231 3.87319 3.95483 4.01065 4.07746 4.19566 4.25572 4.39568 4.43006 4.47993 4.49396 4.54492 4.60867 4.64021 4.71401 4.78824 4.79873 4.87493 4.93803 4.96864 5.01661 5.04332 5.09570 5.09911 5.13221 5.19628 5.24803 5.28478 5.28898 5.35917 5.41378 5.45580 5.57998 5.62424 5.77664 6.17016 6.42384 6.56044 6.58102 6.60976 6.93330 7.45965 9.02084 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.025478 B = 0.004017 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.732406 B = 6968.062799 C = 7326.960795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.075 3.925 3 C -0.176 4.176 4 N -0.687 5.687 5 C 0.074 3.926 6 C -0.071 4.071 7 C -0.090 4.090 8 C 0.057 3.943 9 N -0.538 5.538 10 C 0.097 3.903 11 H 0.056 0.944 12 C -0.173 4.173 13 C -0.002 4.002 14 C -0.485 4.485 15 H 0.031 0.969 16 C -0.004 4.004 17 N -0.960 5.960 18 Si 0.944 3.056 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.248 1.248 22 C 0.061 3.939 23 C -0.107 4.107 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.345 0.655 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.017 0.983 43 H 0.017 0.983 44 H 0.260 0.740 45 H 0.044 0.956 46 H 0.053 0.947 47 H 0.078 0.922 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.480 21.199 -2.755 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.035 4.035 3 C -0.235 4.235 4 N -0.318 5.318 5 C -0.055 4.055 6 C -0.090 4.090 7 C -0.128 4.128 8 C -0.071 4.071 9 N -0.263 5.263 10 C -0.012 4.012 11 H 0.075 0.925 12 C -0.232 4.232 13 C -0.039 4.039 14 C -0.524 4.524 15 H 0.049 0.951 16 C -0.198 4.198 17 N -0.602 5.602 18 Si 0.769 3.231 19 H -0.197 1.197 20 H -0.215 1.215 21 H -0.172 1.172 22 C -0.067 4.067 23 C -0.146 4.146 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.097 0.903 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.716 20.214 -2.060 22.522 hybrid contribution 1.416 0.526 -0.400 1.563 sum -8.301 20.740 -2.460 22.474 Atomic orbital electron populations 1.21721 0.93865 1.01742 1.01946 1.21586 0.96229 0.92787 0.92910 1.22441 1.00869 0.97169 1.02992 1.60555 1.24096 1.40959 1.06206 1.21867 0.89045 0.97366 0.97247 1.21068 0.93702 0.96476 0.97726 1.21410 0.99262 0.95550 0.96563 1.22103 0.89180 0.98333 0.97449 1.61863 1.02066 1.19490 1.42833 1.21481 0.96875 0.94240 0.88556 0.92539 1.22391 1.01830 1.00550 0.98422 1.19599 0.94418 0.94772 0.95117 1.21256 0.93677 1.23408 1.14046 0.95065 1.25941 1.03539 0.95149 0.95206 1.70091 1.32782 1.32224 1.25146 0.85754 0.79692 0.77487 0.80209 1.19679 1.21530 1.17157 1.22004 0.96602 0.90873 0.97219 1.21575 0.96524 0.99014 0.97476 0.92340 0.93214 0.91595 0.91711 0.93321 0.91797 0.91413 0.83615 0.94613 0.92668 0.90434 0.94239 0.89857 0.94202 0.92597 0.92215 0.91878 0.91854 0.96438 0.96486 0.93121 0.93800 0.92842 0.90327 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.52 71.98 0.69 -1.29 16 2 C 0.07 1.21 3.20 44.91 0.14 1.36 16 3 C -0.18 -2.30 9.16 71.98 0.66 -1.64 16 4 N -0.69 -12.61 5.77 -491.58 -2.84 -15.45 16 5 C 0.07 1.58 4.88 86.30 0.42 2.00 16 6 C -0.07 -1.69 2.40 -10.71 -0.03 -1.72 16 7 C -0.09 -2.52 5.24 30.65 0.16 -2.36 16 8 C 0.06 1.78 5.18 86.33 0.45 2.23 16 9 N -0.54 -20.44 4.26 -871.12 -3.71 -24.14 16 10 C 0.10 3.83 2.26 44.92 0.10 3.93 16 11 H 0.06 2.38 7.93 -2.38 -0.02 2.36 16 12 C -0.17 -5.23 8.40 71.98 0.60 -4.63 16 13 C 0.00 -0.07 3.47 29.85 0.10 0.03 16 14 C -0.49 -28.70 9.35 25.60 0.24 -28.46 16 15 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 16 C 0.00 -0.23 5.47 84.65 0.46 0.23 16 17 N -0.96 -62.56 13.96 21.45 0.30 -62.26 16 18 Si 0.94 45.82 27.37 68.60 1.88 47.70 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.25 -11.10 6.69 99.48 0.67 -10.43 16 22 C 0.06 2.02 4.47 86.33 0.39 2.40 16 23 C -0.11 -3.09 5.38 30.65 0.16 -2.92 16 24 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 1.20 7.80 -2.39 -0.02 1.18 16 28 H 0.05 0.69 7.45 -2.38 -0.02 0.67 16 29 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.35 5.45 8.47 -89.70 -0.76 4.69 16 32 H 0.04 0.70 7.44 -2.39 -0.02 0.68 16 33 H 0.05 1.39 8.06 -2.39 -0.02 1.37 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.08 2.09 7.84 -2.39 -0.02 2.07 16 37 H 0.04 1.09 6.98 -2.39 -0.02 1.07 16 38 H 0.06 1.85 7.98 -2.39 -0.02 1.83 16 39 H 0.06 1.73 6.44 -2.39 -0.02 1.71 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.67 6.93 -2.39 -0.02 1.65 16 42 H 0.02 0.82 7.55 -2.39 -0.02 0.80 16 43 H 0.02 0.79 5.54 -2.39 -0.01 0.78 16 44 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 45 H 0.04 1.26 6.57 -2.39 -0.02 1.24 16 46 H 0.05 2.03 6.28 -2.39 -0.01 2.01 16 47 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -67.58 357.60 0.28 -67.31 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.09 Total: 17.70 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 4.55 Total: -30.85 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -6.25 Total: -101.85 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.70 kcal Total: -67.58 0.28 -67.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695902385.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.271 kcal (2) G-P(sol) polarization free energy of solvation -67.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds